efhd2 (efhd2,LOC102781412)


Basic Information

Item Value
gene id efhd2
gene name efhd2,LOC102781412
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 4677700 ~ 4705540 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039800604.1
aagaaaaagaagaagaagaagaagaaacgtCAAAATTCTAAACTGTTTCTGACAACATCCTAAGGTGTAGGGAGGCTATTTGTCTGAACTTGGAGCTCGAAGCCGGAAACAAAAAGTTAGATAAGTATATTTGTGATTAATTTGCTTCGGCTCTTGCCAGAAACACCCCTACAGAGTCTATAGGGCGAGGACGGGGGCGGGATAACAGGACAGAAGGCTGGCTTTAAGGCTGTGCGCTGACGCCTTCTTCTGTAACGTTAGTGTAGTTAGTAAGGTAACCTAAGATAACGCTATCTTTTGATTATTAGCCATTTAATTTGAAAATGGCCACAGACGAACTTTCGTCCAAGCTCAGTCGTCGGCTCCAGATCGAAGAAGGAGCAGAGGATCCTGTTGCTGTGGACGTCAGCGGGTACCAGAATGGGTCGGAAGAGAAACCGAGTACGGCCAATGCAGACTCTGAGCTCGGCGCTAAGCTGATTCGGAGAGAAGAGCTGAACGAGGGGCAGGGTGAGCACTGCCAGCCTAGCATGAAGGTCTTCAACCCATACACCGAGTTCAAAGAGTTCTCCCGAAACCAGATCAAAGACATGGAAAGGATGTTCAAAACGTATGATGCTGGGAAAGACAACTACATTGACCTGATGGAGCTGAAGCTGATGATGGAGAAGCTCGGAGCTCCACAGACCCACATCGGCTTGAAGAACATGATCAAAGAGGTGGACGAGGACCTGGACAACAAGCTTAGCTTCAGAGAgTTCCTACTCATCTTCAAAAAGGCAGCAGCAGGAGAGCTGGCAGAAGACAGCGGCCTCAGTGTCCTTGCTCGCCTCTCTGAAATCGACGTTTCCACagagggggtcaagggagccAAGACTTTCTTTGAAGCCAAAGTCCAGGCCATCAATGAGTCCAACCGTTTTGAGGCAGAAATCCGCCAGGAGCAGGAGGCCAAGAAGAAGCAGGCCGAGGACCAGAAACAGAGACGCGCTGCTTTCAAAGAACTCCAGTCAGCCTTCAAGTGACCGCCTCCATCTCCTCTCAGGACCTGTCGCTTTCTGTGCTGCACTTATGCTGTCAgtttgtcaatgtgtgtgtttgaatgctCCATGTATGTCCGTGGTAGTCCCGAGTCAAACACAGGCTCAAGGTGCCCGACATGCTGGTCACTATTCCAagatatattttgtatattatagTAAATTGGCACTGCTTATTAGGGCTGGGTTTAAAAGAAATCAATTTTCCAATTCAGTGTGAGTGATCTGATAACTATTCAGAAACAGATTGATCTTTTAAGAGGCTCCGTTTTAAAAGTAGACTGAAGACATTGGTATCAAATGAAACTAGACAATCTAAGGAATCCTCCAAAGTTAGGTGAGATTTTGGCAAGGACAAAAAATTGGCATGGCCATTCAGGCCATGTAGGGCTTTAGGTATACTGTCTCTGCATCACATCCTCTGCACTAAAGAAAGCAcacgttttttttctgtctctatgTAACAGCTTTGGGGTCAATTCTTAAAGACAACATTAATATTTGAATTAATGCACCAGGTTAGAGGGTttcttgtacaatttacagcatcTGAAAATCTTTTTGTACATCCAAGCAAAATTGGTATCGTAACTAAAATATCCCTAATCAAATCGATATATAATCAAATCAAATCGGTACTGTGAATCAGATTTGAATCGATTCAAGAAATAACtggtgatacccagccctactgcttATGCAGATCATCTTTAAAGAATAATTGATTTATCCGTCTAGCatcgttttttttgtatttttttctttttagctttGTAGCTCAGTAACACTCTCAAACAACTATAGCAGGATTACCAATAGAGCAGTCTATGCTGAGCTAAATGAATGGATGATTCTTACAATATTTGTCATCCATCCCTGAAAGCTGCTTTTTACCCAAATGTCAACTCTGTGGCTCTCTGGATCACCACAGTGGGGGTTCAgctccagcaaaaaaaaaaaggtagaaatgATTGTCAGTATCATAACTTTCCAGAGTAGTGAAATCCTGCCTCATAGTAATATAAATTGCTCggcagtgttttggtgtcaaaCTCATGGATTTGTCACTCTAGTCGGCTTACATAAATGTCTAACCTGTACCTGACACAAAATGCGCACAGCCATTTgctgtgtgttgtcttttctgTAATCTGTGGCCAAAATAATCCAGTGTCCATTTCTTTATATTTGTGTAGACTAGTGATAAATgcactttttccactgttttggCTCCTCTGTATGTCAGCTTGTCTGAGATATATTTGACCACTCATTCCAGAACTCGTATTAAATCCACCGTGACACAAGTTAGTGTTTAATGATGAACAAATAGCTGAgctctttgtttttattgtcgGCTCTGTATTTTTCTACAATGGGTTTGGGTGGGTATTGAGTAAATTTTGGTATGTGGTTTGGGATGGTTGTGGTGGTGGTTATTCTTCAGCACCATGTTTTGTATGGGCCCTCTTAAGCACagctttaaaatatatatttttttaaatgtgggtcttctttttctagtttcaGCCATTATTCCTATCCTATCAGCTCTGTTACCATTATATTATCAAATCCTTgtttatttcattgtttttccACTAGCTGCTTTTTCAAAAAATCAAGTTCAAACAAATGAACAAGTACAAATACCCACAAGTCACAAACGCATATGTTTGAATTGATTGTAATGCAACCAATATATTCTAATCACAGGGAaggaaatgaatgaagaaacATCCCTTTAACCTAGTTAGGTTAAAGGGATgtttcttcattcatttcctTACTATGTGTGAAACCTGTTGACTTCACATTTGTTGTCATGGTAATGCAGGTGCATTTTTAAAAGGGAGCAAACAGCCTCACCTTTATCCACAATTATTCCATCTCTGATGTTAAATCCCAAATGCTTTCTCACATTACTACTCAGATGGTTTGGTGTCATGATTACTTGTTCGCTGTGGCTCGCTAGCTTCCTCCATTTTTGTAATAAAGGGAACAACAAATAGTCTCAGTTATTGACAGGGCATGCAGTAGGTCAGTAACCAGAGTGCATTTAATTAATGCCTTGCAGTAACgtcactgatttaaaaaaataaaaataaaattctttACACATTACAGTGTTAATTAGTGCCGGTTTGATTGTAGCTCTGCCTGAATTAGCTACTTATTAGCTGTAGAGATAAATGGTCTCTTTCACATATGCATTTATTTCATGGATTATTTCTGAACAAAAATGGACTAGCAGGGGAACACTGGGCAACTGAAGTAATGCAAACTTGTACTGATGTGATGTATTACAGTGAAGCACTTTCTAGGTCACGTATCAGAAAAATATTCTTATGGATGATGTAATTCAACTGTATGCCCTTGTCCTGGATATATTTAAAGCATTCATCAAACGTGTCAAACACACCTGCCAAATTTCACACTTTTGTGTGATCTTCAGGATTATCACTTGCAATAAACTAAATCTAATATCTTTAATTTTGGTGTCATGGCACAGTGCAATTTAAATTAGTTTTAGGGCAGATTTGTTGTCAATGAATGTTTGCTTTGGAGCCATTTTGTAAATGTATGAGGTTAGAAACATTTGGTTAGTACTGTGTAACATAATATGCAAGCTCCCATAGTGTTGATAGTGTTATGGTGCTGTTTGTTGATGTATGCCAGCACTTCACAGCACATTGTGACTGAAATGTTACTCGTGAATGCTTTCCCATGAAtgttcaaaaaatattttatcacagTATGAAAATACTCCTCCATTTTTAGGATGCAGGTTTTCTTTGAAATGTCCTCTAAGTTCATGTTGTTGATAGTTGAATTCACAGTTGGGTTTTGCAACTTCGTTAGTAAGCTAGGAGGAACTTTGGGGATTTCAGGGTTCAAACATGTCTTGTGTAAAGGGTGGTCAGTGAATAGTTGTGATTTTTGTCAGATGTATCATGTTTTTCCATGTGAAATTAATAACTGTTGTTGCCTGCTGTAACAAAACACTGGTAGCTGTAATATTTGGATTTTTGTGTTGATTTTTGTGCTACTGattttttccaaaattcccTCAAGATTCAAAAGAAGCCCcatttcttttggaaaatgcaaaacaaaaacaaatgaagtgTCCTTGTGTGTTTCTCCATTGATTGTGTCCAGGATATGCCAACACTGTATTATGTAATAGAGGGGTAACAGGAAACAaaagtttcatttattttaaacgtCATTCCATTAAATATGACCTAAATACTGATAAAGAATTCCATGAATACCTCAACTGAATTCTCCCAAATCATTGCGTAATGTCCTTATTGTTACCAGAATAGTGCCAAATGTTTAAGCTACTGTCATTATGCTCAGTCTAGTGGAACTGCACTCTACAGCAACATCAATGTGAATGTAAATTATATCTACATTGTTATTTAGATAGCTGTTGGCCATTGTcagcattttcttttcattcttgGTACAGCATTCCATCATACTACTCTCATGAACATTATAGGCTGAAGTGGCATGTATGCATTTTTTTCTGCTGCAATCCTTTGCCACTGAGAGACATGTTTCCAGTTGGGAGGGGATTTGGGGTCTCTGGGCTGGATAACAATCAGGGAGGGGATTttttggtatgttgaaaaactgtaatacaccTTATGTTGATTTCCAATAGTAGGCCTATGCATCCTTTTGTCACAATAAATTGCCCATAGATTGTG

Function

symbol description
efhd2 Predicted to enable calcium ion binding activity. Orthologous to human EFHD2 (EF-hand domain family member D2).

NR:

description
EF-hand domain-containing protein D2-like

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23922 EFHD2; EF-hand domain-containing family member D2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039800604.1 True 4762 mRNA 0.39 4 4677700 4705540

Neighbor

gene id symbol gene type direction distance location
LOC120559100 LOC100709480,LOC103374188,LOC101478014,LOC102305352,LOC102202239,LOC102794305 coding downstream 296639 4283188 ~ 4381061 (-)
asxl1 LOC102292987,LOC107098928 coding downstream 672052 3983273 ~ 4005648 (-)
LOC120558369 NA coding downstream 722930 3952301 ~ 3954770 (-)
si:dkey-16n15.6 LOC103362245 coding downstream 749544 3913993 ~ 3928156 (-)
LOC120559452 suv39h1,LOC102791492 coding downstream 767930 3880310 ~ 3909770 (-)
LOC120558499 LOC105418166,LOC101068103,LOC108412963,LOC106522608,LOC108431938,LOC105419408,LOC106674638,LOC108415465 coding upstream 501682 5207222 ~ 5218713 (-)
LOC120559579 LOC103144399 coding upstream 1032781 5738321 ~ 5741953 (-)
tcea2 LOC103367858,LOC108232081 coding upstream 1700823 6406363 ~ 6427923 (-)
LOC120558793 NA coding upstream 2111167 6816707 ~ 6823536 (-)
LOC120558600 NA coding upstream 2122145 6827685 ~ 6838050 (-)
LOC120559758 NA non-coding downstream 37558 4639093 ~ 4640142 (-)
LOC120559646 NA non-coding downstream 42260 4634314 ~ 4635440 (-)
LOC120558634 NA non-coding downstream 49177 4625963 ~ 4628523 (-)
LOC120558635 NA non-coding downstream 215494 4461787 ~ 4462206 (-)
G47162 samd3,LOC101476819 non-coding downstream 285937 4391269 ~ 4391763 (-)
LOC120559128 NA non-coding upstream 3852 4709392 ~ 4710407 (-)
G47251 NA non-coding upstream 22293 4727833 ~ 4728109 (-)
G47297 NA non-coding upstream 146650 4852190 ~ 4852414 (-)
G47304 NA non-coding upstream 182409 4887949 ~ 4889652 (-)
G47305 NA non-coding upstream 182721 4888261 ~ 4895639 (-)
dedd dedd,LOC103374682 other downstream 55864 4591447 ~ 4621836 (-)
G47059 LOC102202574 other downstream 721318 3955604 ~ 3956382 (-)
G47058 NA other downstream 722171 3955026 ~ 3955529 (-)
LOC120559679 LOC103384848,LOC102790723,LOC100693496 other downstream 727529 3934511 ~ 3950171 (-)
LOC120559401 NA other downstream 1183737 3491004 ~ 3493963 (-)
G47252 NA other upstream 24961 4730501 ~ 4731141 (-)
G47254 NA other upstream 27256 4732796 ~ 4733285 (-)
G47624 NA other upstream 1990905 6696445 ~ 6721729 (-)
G47638 NA other upstream 2098601 6804141 ~ 6805706 (-)
LOC120558602 NA other upstream 2249664 6955204 ~ 7036375 (-)

Expression


Co-expression Network