samhd1 (samhd1)


Basic Information

Item Value
gene id samhd1
gene name samhd1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 18775750 ~ 18787283 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039800724.1
CGGTGTAGAAACAAAACCCGGGTAACTAGTTTCACCGCCGCCCGAGTGTCTTCTGTGCAGAACTAGCTACCGGATCAGCTGCTGCAGTCAACGTGGGAAACATTACCGGCTGTATTTTTGCCGGTATCCACTCTTCTGACTAACCCAAATTACCGCCTGTTTTCGTAGACCAATATGGAGAACAGAAAACGACCGTTAGGGGCAGTTGTGACCCCTAATGACAGCTTCAAAACGCCGGAGAAGAGAGTGTCAGTGGTCCGGCTGCTGGACTCGGACTACATGCGATGGGGAGTAGAGGAAACATGTCGATACCTGCGAGGAGAAGGTCTCGGAGAATGGGAAGATACATTTAAAGCACAAAAAATCACAGGCATCGGGCTGCGGTATCTCAAGGATGCTGATCTGGAGAAGATTGGCATAAAGTACCTTGGTGACCGTCTGCAGATCCTACACAGCCTCAGGAAGCTGTGGCAGATAGAAGCAGAGGCAAATAAGGTGTTTAATGATCCCATCCACGGGCATGTGGAGTTGCACCCTCTTCTCATCAAAATCATCGACACACCTCAGTTCCAGAGACTACGAAACCTCAAGCAGCTTGGAGGGACCTACTTTGTTTTTCCTGGAGCCTCCCACAACCGCTTTGAGCACTGCATTGGGGTGGGTCACTTGGCAGGGCAACTTGTACAAGCTCTGAATGAGAGGCAGCCAGAACTCCTCATCTCTCGCAGAGACATCCTTTGTGTGCAGATCGCTGGGCTCTGCCATGACCTGGGACATGGGCCATTTTCCCATATGTTTGACGGGAAGTTCATCCCCAAAGCACGTCCGGGAATTTCCTGGAAGCATGAGAACGCCTCTCTCGACATGTTTGATTACCTGGTAAAAGACAACGGCCTGAAGCCGGTGATGGAGCAGCACGGCCTGGTGCTACCCGAGGACCTGGAGTTTATTAAAGAACAGATCGCTGGACCACCGGACACTAATGCAGCTCAAGGCCAGAAGTGGCCATATAAAGGCCGTACAGAAGACAAGTCCTTCCTCTATGAAATCGTGGCCAACAAAAGAAATGGCATTGATGTGGACAAGTGGGACTACTTTGCCAGGGACTGCTACCACCTGGGCATCCAGAACAACTTTGACTATCGCCGCTTCCTAAAGTTTGCCAGGGTGTGTGAGGTGGACGGGCAGAAGCACATCTGCACTAGAGACAAGGAGGTGGGTAATCTGTATGACATGTTCCATACGAGGAACTGTCTCCACAGAAGAGCCTACCAGCACAAAGTGGGCAACATCATAGAAACTATGATTGCAGAGGCCTTTTTAAAAGCAGACAAGCACATACAGATTGAAGGCTCAGAAGGGAAGATGTTCACTCTCTCCACAGCCATAGATGACATGGAGGCCTACACCAAGCTGACAGATCATATTTTTGAGCAAATACTGCACTCCTCCTCCCCGGAGCTGGCTGAATCGAGGCAGATTCTACGCAACATCATCTGTCGACGCCTCTATAAGTGCCTGGGCCAAACCCAGGCAGACAAACCCATGAGTTTcacccagGAGACGATTCGCAGCTGGGAAGCAGATCTGGCTCGAGCCATCCCTCAGAGCGGCGCCCAGGATGTCCGTCTGCAGCCAGAGGACTTTGTAGTTAATGTAATTTTTATGGACTACGGGATGAAGGAAAAGAACCCCATCAACAATGTGCGTTTCTATTGCAAGGATGACCTAACCACAGCCATCCAGATTCGGAAGAACCAGGTGTCTAAACTTCTCCCAGAGCAGTTTGCTGAGCAGCTGATCAGGGTCCACTGCAAGAAGACTGATGACAGGAGTCTGGAGGCCGCCAAGAAGCACTTTGTCCAGTGGTGCATGAACATGAACTTCTCAAAGCCTCAGGATGGAGACATAATAGCACCTGAGCTGACTCCGCTAAAAGCCAGCTGGTCAAACAACAATGAGGGCGAGGATGGCGAAGGGGGCGGCCTCAGGGAAGGAAACTGTGCTAGTGTCAATGGACAAAAGAGAGCCAAAATTCAGCTTTCATTTAATTAGGAGGAAGAGAGCAAACCCCTACCCCTCTGTTACACATTTGGTCAAATGAGACAGTGTTGAGTGACAATTCTATTTTTCTACAAGGCAAGTGTGTTGGTTAGCAGAACAAAATTCTAAATAATTAACccaaagaaattattttaaagtttcAACAACAAATGGATTCATTGTGGCTCATTTAGGGTCCGTACTCAGGGTTTTTACACACATCCCTCTTGAGCATTATACACATTTGTTTTAGTTTGATAATTATTAATCCGGTTTTTATTTGACTTCCTTTTGTGCAAGTGTTACATTTTAAGTTGATTTGTTTTCATACTATGGGCTATCAAATAGCCTACTATCATGTATTTGTGTTATGAACGATAAATCATGGTCAGCTAACATGTTTTACTCTGAAcatgtgtacagtatatttcagggcagtgtgtttttacagcttacatacacacacacgctcagtgAGCATTTGTTTTTACCTTACCTTACTTTAGACCTTTACTTTGAATGTATTTAAGTGTTTTCTGGTTGAGTGTGTTGTGAAGTGCATTAGTGCTTTATTTATTGTTCTTACAGTAAGTAGCTCAGCTTGCCcattgactttttcttttcaaatgacACATCTCtgcaacattttaaatggaaTTGTTGTTAccgtttaaaatgttttcctctTGTCAAAATGTGATCTCATCCAACTTATCCCATATCtggttgttttattttgctgaTCGTGTACAAAAGAATAATATTTTTGAAAGAATGTGAAGGGAAACTTACCAAGGGTTTTGGGAAGATCCTGTAAATAGTATTCTTATTGAAAGGGGTTTGAaaacagtttgaaaataaaactcTCTCGTCCTGA

Function

symbol description
samhd1 Predicted to enable several functions, including dGTP binding activity; dGTPase activity; and nucleic acid binding activity. Acts upstream of or within regulation of innate immune response. Predicted to be located in site of double-strand break. Predicted to be active in nucleus. Used to study Aicardi-Goutieres syndrome. Human ortholog(s) of this gene implicated in Aicardi-Goutieres syndrome; Chilblain lupus; and acute myeloid leukemia. Orthologous to human SAMHD1 (SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1).

NR:

description
deoxynucleoside triphosphate triphosphohydrolase SAMHD1-like isoform X4

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0046872 metal ion binding molecular_function
GO:0008081 phosphoric diester hydrolase activity molecular_function

KEGG:

id description
K22544 SAMHD1; deoxynucleoside triphosphate triphosphohydrolase SAMHD1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039800724.1 True 2920 mRNA 0.46 16 18775750 18787283

Neighbor

gene id symbol gene type direction distance location
LOC120558486 tp53inp2 coding downstream 52541 18713626 ~ 18723209 (-)
LOC120558485 ggt7 coding downstream 63874 18700325 ~ 18711876 (-)
ncoa6 ncoa6 coding downstream 75739 18686773 ~ 18700011 (-)
top1 LOC103366028 coding downstream 89328 18670674 ~ 18686422 (-)
plcg1 plcg1 coding downstream 107001 18636575 ~ 18668749 (-)
LOC120559673 LOC104946588,LOC103370859 coding upstream 14664 18801947 ~ 18817830 (-)
LOC120559674 LOC103370862 coding upstream 31559 18818842 ~ 18826772 (-)
si:ch211-117c9.5 slc6a8,LOC101473935,LOC102296397,LOC106523826,LOC103370863,LOC102778284 coding upstream 68657 18855940 ~ 18873169 (-)
parapinopsina LOC103370869,LOC104963629 coding upstream 143692 18930975 ~ 18933494 (-)
capza1b capza1,LOC104955722,LOC103367229 coding upstream 433737 19221020 ~ 19225831 (-)
G51069 NA non-coding downstream 17249 18758042 ~ 18758501 (-)
G51068 sna2 non-coding downstream 35407 18738483 ~ 18740343 (-)
G51064 NA non-coding downstream 62537 18712675 ~ 18713213 (-)
G50991 NA non-coding downstream 140515 18634465 ~ 18635235 (-)
G50945 NA non-coding downstream 270734 18504469 ~ 18505016 (-)
G51088 NA non-coding upstream 135580 18922863 ~ 18928835 (-)
G51122 apeh,LOC103467450 non-coding upstream 440038 19227321 ~ 19227905 (-)
G51147 NA non-coding upstream 540369 19327652 ~ 19415195 (-)
G51228 lrtm1,LOC102799284 non-coding upstream 669369 19456652 ~ 19459405 (-)
G51236 NA non-coding upstream 808311 19595594 ~ 19597508 (-)
samd10b samd10,LOC107570869 other downstream 674178 17974293 ~ 18101572 (-)
zbtb46 zbtb46,LOC102795869 other downstream 880668 17835080 ~ 17895082 (-)
G50712 birc7 other downstream 1085990 17688115 ~ 17689760 (-)
LOC120559328 smim4 other downstream 1660703 17106834 ~ 17115047 (-)
G50217 fgd3,LOC104966710 other downstream 2491894 16281044 ~ 16283856 (-)
LOC120558627 LOC103370864,LOC104963599,LOC101472162 other upstream 87472 18874755 ~ 18886895 (-)
kcnd3 kcnd3,LOC102776651,LOC102303593,LOC100697611,LOC101470631 other upstream 158685 18945968 ~ 19077781 (-)
LOC120558911 LOC103362803,LOC100693258 other upstream 1011922 19799205 ~ 19815318 (-)
LOC120558386 hoxc10,LOC100690382 other upstream 2032888 20820171 ~ 20952518 (-)
fmnl3 fmnl3 other upstream 2380621 21167904 ~ 21199043 (-)

Expression


Co-expression Network