exosc10 (exosc10,LOC102796841)


Basic Information

Item Value
gene id exosc10
gene name exosc10,LOC102796841
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 24370418 ~ 24384608 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039800738.1
CAAGAAAAACAGTGAGGAACGGGggctgcttcctgctgctcaCATGTACACAGCAGCACCAAACTGATTATGGATTCTTCAAAGAGTAAAGACTCCACAAACAGCGGccttcaagaaaccaatttagACACCAACGACGAGAAAAAAGCCCACTTGTGTCCCGGTTTTAAAGACGCGGATGCTTTTGTTAAATATGGATTGGGTGCTGTATTATCCGCCACCAAAGCATCCGCCGGCTTGCCTCAAACTGGAGATGAATATGATTTCTATCGGAGCTTCCCGGGCTTCCAGGAGTTCTGTGAAAGTCAAGGAGATAAGCTCTTGCACTGCATGAGTCAGATAATGCAGCACCACGGCTGCAGATCTCGCATGAGAGACCGGAATAAGCTGACGGGGCTGGAGGAGAGGTTTGACTTGGTTGTGGACTCGAACGACGTCATCCTCGAAAGAGTGGGGATTCTTCTCGATGAAGCTGATGGGGTGAACAGGAACCAGCAGCCTGTCATGCCTGCAGAGTTTCAGCCTCCCAAGATTGTTGTTTCCAGCTGGAATCGCATGGGTTCAAGCTCTGGCAATCGTTCTGAGACGTTCCGACTGCTCCAAGCCAAGAATATTGCTAGGCCTCAGATGAAATTCAAGGAAAAAGTTGACAACAGCAACACACCATTTATTCCCAAGATCTTCATCAAACCCAATGCAGTAAAGCCTCTACCTTCATATTTCACCAACAAGCAAATCCGTAAAGAGAGACCCGAGGACCTTGATGTTCCGGCTGCTCTGGCTGACTTCATTCACCAGCAGAGAACTCAGGAACATGTTGAAGACATGTTTGCACACCCATACCAATATGAACTGGATCATCTTACAATACCAGAAACTGTTCTGTCCAAGCCAGAACCACAGatgtACAAACCGTTGACTGAGACCAAATGCTCCTTCATTGACACACTGGAGGATCTGGTGGCTCTGAATGAGAAGCTTTGCAAATTGTCTGAATTTGCAGTGGACCTTGAGCACCACTCCTACAGGAGTTTCCTCGGCCTCACCTGTCTGATACAGATctccagcagagaggaggactTCATCATCGACGCCATTGAGCTCCGCAGCGAGTTGTACATCCTCAACGAGGCATTCACTGACCCGGCTATTGTCAAGGTATTTCACGGTGCTGACTCTGACATTGAGTGGCTGCAGAGGGACTTTGGCTTGTATGTCGTCAACCTGTTTGACACGCATCAGGCCAGCCGAGCTCTGAACCTGGCCAGACATTCCCTCGACCAACTGCTCAAACACTTCTGCAATGTGAACTCAGAGAAACGCTACCAGCTGGCTGACTGGAGGATTCGCCCTTTGCCAGATGAGATGGTGCAGTACGCCCGGATGGACACCCACTACCTCCTTTACATCTATGACTGTGTGAAGGTGCAGCTGCTGGACTTTAACCACGGGCAGCCTGGCCTGCTGCAGAGTGTCTGGAACAAGAGCAAAGACATTTCTCTGAAGAAATACATGAAGCCTATATTCACAGAGGAGTCATATTTGGAGCTGCAGAGGAAGCAGAAAAGATCTTTTAACACCCAGCAGCTCACTGCCTTCAGACTGCTATTTGCCTGGAGGGACAAGCTGGCCAGGCAGGAAGATGAAAGCACCGGattTACCCTGCCCACTCACATGATGAACAAGATATCTGAGGAGCTGCCCAAAGAGCCTCAGGGCATCATTGCCTGCTGTAACCCTGTACCCCCACTGGTCAGGCAGCAGGTCAATGAGCTCCATTTGTTAGTGCAGCAGGCGAGAGAAATGCCTCTTCTTAAGGCTGAGATTGCAGctgaaaagaagaaaggacTCACACCCATAAAAAAGCCCGAGGTCACAATGTTTGGTCCTCATGATACATCCAGGGTCTCTGAGAGCGATCTCCAGCACTGTTCTCCTGATGaacTGCCTGTCAAACAAGGGGTGCTCTTCGCAGAGGATGAGCCCAAGATGGATGTTGTGCAGAAAACAAGTGGTCTTATGGCAGCAGCTAAAATCACACAGTTCGAGGAGCTGGAAACACAGAATGACCACGAGTCCCTCTCTGTGGCTCAGATGAAAGCCAGACGGATCATTGAGTGTTTTGAAAACCCTTTCAGAATGTACTTACCCTCCAGTGATGTGCACATCAGCAAGAATGCCAAGTTTGACCCATCTTCAAAAATATTTGAGATTAGTAAAAGATGGAAACTGCTGAGTATGGAACAGCAACAGAAGGAGTTGGAGGCCAAGAAGGAGGCCAATAGGAAAGCCAAGGAAGAAGCAAAGgaacacacaaagaaagtggcAGAGGAAAGAAACCAGGCTAAACAGAGCTACCAGGAGTCTCTCCAGAATGTTGCCACTGTTCGCCAGCAGGCAGCGGAATCTGCAAAAGGTGgcggaaagaaaagagagagggtcGCCAGTGAGGTTGGAGAGTCGACTCCCAAACCGAGTAAGAAGCAGATGAAATCGGCAGAGAAGCCCCAAAAGACAGAACCGCCGCCCCAAGACAGCTTCAAGCCTTTTGACTACAGTCAGTCAGACCTCAAAGTCTTTGCTGgtaCAAAATCCAAAGACAACACCCAGTTTGATCCAAACCGACAAGCCCATGGTTTTAAGAAAAAGAAAACTCCCAGGGGACAAAAATCCAATAGTGGAGCTGGAAGCCGAAGTATGTCGTACATGGCTGGAAAATCTGATAGAGGATTCCGGCACAACTGGCCCAAAAGATAAACTCCCTTTGATACTATTTTCTGTCgtattttaaaacttttttttttcatcctgcAGAAACAATGTTTCCATTTTTTCCTTCTTGCAAGTGAAATTCAGTATTTCAATATTTAATGAATTTCAAAGTGTATTTTCTTCTATCTGTGGAAAAGTTTACCCTGTAAATATGTGGAAGCACAGACCTCTTTATTAAAGATGATTTTAGAGGAAA

Function

symbol description
exosc10 Predicted to enable 3'-5'-exoribonuclease activity and single-stranded RNA binding activity. Predicted to be involved in RNA catabolic process and ncRNA 3'-end processing. Predicted to act upstream of or within RNA processing. Predicted to be part of nuclear exosome (RNase complex). Predicted to be active in nucleolus. Orthologous to human EXOSC10 (exosome component 10).

NR:

description
exosome component 10

GO: NA

KEGG:

id description
K12591 RRP6, EXOSC10; exosome complex exonuclease RRP6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039800738.1 True 2968 mRNA 0.47 25 24370418 24384608

Neighbor

gene id symbol gene type direction distance location
srm srm coding downstream 4907 24360952 ~ 24365511 (-)
cort cort,LOC101173302,LOC102226263,LOC100698045,LOC103363980 coding downstream 12407 24356788 ~ 24358011 (-)
pex14 pex14 coding downstream 51415 24266174 ~ 24319003 (-)
tardbpa tardbp,LOC106534252 coding downstream 348546 24008001 ~ 24021872 (-)
lzic lzic coding downstream 476234 23891799 ~ 23894184 (-)
cntn3a.2 LOC103363983,LOC100703160,LOC104954126,LOC102301181,LOC102197109 coding upstream 5589 24390197 ~ 24427068 (-)
si:dkey-178k16.1 epb41l1,LOC103363988,LOC102294250,LOC102199659 coding upstream 250163 24634771 ~ 24671798 (-)
edn3b NA coding upstream 303991 24688599 ~ 24697982 (-)
fam217ba fam217b,LOC102078452 coding upstream 331114 24715722 ~ 24719674 (-)
wfdc2 LOC104919425,LOC106572146 coding upstream 410261 24794869 ~ 24796108 (-)
G52746 NA non-coding downstream 2949 24367149 ~ 24367469 (-)
G52732 NA non-coding downstream 43442 24325020 ~ 24326976 (-)
G52706 NA non-coding downstream 261704 24108484 ~ 24108714 (-)
G52692 NA non-coding downstream 357167 24012963 ~ 24013251 (-)
G52679 pgd,LOC102797219 non-coding downstream 368786 23995628 ~ 24001632 (-)
G52765 NA non-coding upstream 1295 24385903 ~ 24386621 (-)
G52776 chl1,LOC101079354 non-coding upstream 81426 24466034 ~ 24468019 (-)
G52818 NA non-coding upstream 320909 24705517 ~ 24706004 (-)
G52883 NA non-coding upstream 536108 24920716 ~ 24945315 (-)
LOC120559116 LOC103353002,LOC102301713,LOC102203634,LOC101480204,LOC104956590 non-coding upstream 541149 24925757 ~ 24928651 (-)
masp2 masp2,LOC106536928,LOC103357864,LOC107086886 other downstream 30962 24335149 ~ 24339456 (-)
G52501 eno1,LOC104965722,LOC103151087 other downstream 1050734 23308500 ~ 23319684 (-)
si:ch211-150o23.3 LOC103367744,LOC101075068 other downstream 1151518 23214098 ~ 23218900 (-)
G52226 NA other downstream 1839710 22529606 ~ 22530708 (-)
LOC120559880 LOC104932903,LOC103358260,LOC104967532,LOC107390844 other downstream 2140997 22223149 ~ 22229421 (-)
phactr3a LOC100701276,LOC107550338,LOC107551495,LOC104947949,LOC103365918,LOC106955159 other upstream 365823 24750431 ~ 24785005 (-)
acot7 acot7,LOC102782704 other upstream 1526147 25910755 ~ 25972322 (-)
emc1 NA other upstream 1752390 26136998 ~ 26147245 (-)
G53196 NA other upstream 1828385 26212993 ~ 26214882 (-)
LOC120559114 LOC101164642,LOC104966947,LOC100690915,LOC104926428,LOC102195969,LOC101062277 other upstream 2007404 26392012 ~ 26402310 (-)

Expression


Co-expression Network