lmod3 (lmod3)


Basic Information

Item Value
gene id lmod3
gene name lmod3
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 13531879 ~ 13534915 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039800753.1
GAAGCAACTGTCATCCCAAAAGATCCTGATGGCCAGGCCAGCTGGGAGCAGGGGCTGAAAGAAGAATTTTAGCATGGCTCCCTGCTTGTACCTTAAATATCTTCCATGCAGTTCACAGGATTTAATTTTAGACTCCACATGCGGTAGGAGCAAATGGTTCCTAGCTGAAGTCAAAGTCAGAGGCTTCTCAGTTTGCTCTGTCCTGAGTCATAGATTGGACAGAAGTTGTCCTTCCTTTTGATATCAGCGGAAGAAAGAAGTTTACGCAAATATGTCAAACAGTAGGAAAGACTTTGAGGATCTCAATGAAGAGGATATGGACGAGGATGAACTCCTTGCAATGCTTTCACCCGAGGAGCTTAAGGAGCTCCAGAGTGAGATGGATGTTATTATTGCCCCAGATGAGAGGGTACCGGTGGGGCAGAGGCAAAAGGACCAGACGGAGAAGCCTCCAACAGGGACGTTCGACCACAGATCCCTGGTTGGTTACCTCTACTGGGAGAAAGAGTCCAACCGTATGCTTGAGGAAGAAAGAGTGCCTGCTATTCTGCTGCCCAGTGAGAAAGCTTTGAGGGAGGAAACTGAAAAGAAAGACGAGGAAGAAGATGTGGAATATGAAGTAATAGAGGAAGTCATTGAGGAAGAAGCTGTAGATGATACAGATGGAGAGGAAATTATAGAGATCATTGAGGAAATTGTTGAAGAGCTTGACGAGAGGGATGAAAACGATGAAAAGGACAAAGGGGTGgatgaggaagatgaggaagagGTGAAGTCACTTGTGAACAATGGCAAACGTGAAAATATAGACAAACATGTAGATCCTCTACACGCTAACagagaaaaagtgtcaaaaaacaaTGCAGATGACAATCAGCCTTTTCCAGACACAAAGGAGAAGAGTGAGAGCATAGCCCCAAAACACGGCACATCACAAgttgaagagaaagaggaaattcAAACTACAGACTCTTTGCTTCCCAAAGAGGCTCCAGAGGAGCCCAAAATAAGCAAAACCAATGATGAGCCACTGCCGAAAGAAGAGAGAACTACAGACTCTTCGCTTCCCAAAGAGGCTCCAGAGGAGCCCAAAATAAGCAAAACCAATGATGAGCCCCTGccgaaagaagagagaaaaattaACAAATTACAACTTCCAAAGCTGGCATTCAACAatataaaaatgacatcaagACCCTCAGGAAATGAGACAAACTTGGAGTCGACGCTCGACAAAATCCGCAACAACAACCCGTCTATCACTGAGGTAAACCTCAACAACATAGAAAACATTCCCAAAGAGATGCTCTTGGATTATGTCAACGCTTTGAAGAAGAACAAACATGTGAAAACCTTCAGTATTGCCAACACTGGTGTTGATGAAAACATAGCTTTCAACCTGGCCAACATGTTACGAGAGAATCGCGGCATCACCACTTTGAATATTGAGTCCAACTTTGTGACCGGGAAGGGCATCGTCGCCATCATCCGCTGCCTCCAATTCAACGAGACTCTCACAGAGCTGCGTTTTCACAACCAGAGGCACATGTTGGGTCACCACGCAGAGATGGAGATCTCACGCCTGCTCAAGGCCAACAACACCCTCCTGAAGATGGGCTACCACTTTGAGCAGCCGGGGCCCAGGATGGTGGTGACCAACCTTCTAACCAGGAATCTGGACCGCCAGAGGCAGCTGAGGAAGGAGGagcaaaagcagcagcaagtgAAGGAGCAGAGGGAGCTGATGCAGATGTATGAGAACAGCCTTAACCTACCGCCTGGTTTACTTGAGATGCTCGGCTACATACCGCCTCTAGAAGTCCTGCAGGAGCATGGGCTTGTCCCACCCTCGTTTGAACTGAGCACTGTACCTCAAACCCACCACCAGACGGGACAGCCGGAGCCTCAGAAGGAACTCAAACACAAGAGCACTCCCAAACAACCCAGTGCCGAACCAGCAAACGCATTGAGGGACGTCCAGTTGAAGAGGACTCCCAAGAAACGTGACCCTTTTCTGGACCTGGACCCGAGGGATAACAGGAGACCAGAGAATGCAAGTTTCAAACTGAGGAAGACTCCCAAAGAGAAGGATGCAGGCAGTGGAGAGGTGGCAGATGAAAGAGAAAACCTGACTGACGTGATTAAGACTTTGAAGCCCATCCCTCGCAGACGACTGCCCCCTAAGGTTGATGTCACACCCCGCGACCAGCTCCTAGATGCAATCAAAAAGAGCAACGTGGCCTATCTCAAAGCTGTGCCGCTCCCTAAAGTTCTGGAATCAAGTGAAACGAGTCTCCTCTGAGGCTGCAACTTCAGCCGTTTGTTTTCTTCACCatatagttttctttattttacatgtATTCTCAAATGCACTGTGCAAAATAAGAGTGAACCATGCTTTCCTAACACATAAAACATATCGGCTGGTTGTTGTTTCAGTCTTGTGTTGTTATCACACTGAATGCTGTCTTTAGGAAGTTGTAACAAAGGTACAAATTACCAACACCCTATTCAATTTAAATCAAAGTAGATAACCTAATCGTCATTTGCTATTGCCATTGTTCATATATTTCTTATTGTGCAAAtaaaatagatttttattgtAGTTGTGTTAGATTAAATGTTAGATTTGCATTTGCTATAAAGAAATCTTCCACTTTT
>XM_039800754.1
TGAAGCAACTGTCATCCCAAAAGATCCTGATGGCCAGGCCAGCTGGGAGCAGGGGCTGAAAGAAGAATTTTAGCATGGCTCCCTGCTTGTACCTTAAATATCTTCCATGCAGTTCACAGGATTTAATTTTAGACTCCACATGCGGTAGGAGCAAATGGTTCCTAGCTGAAGTCAAAGTCAGAGGCTTCTCAGTTTGCTCTGTCCTGAGTCATAGATTGGACAGAAGTTGTCCTTCCTTTTGATATCAGCGGAAGAAAGAAGTTTACGCAAATATGTCAAACAGTAGGAAAGACTTTGAGGATCTCAATGAAGAGGATATGGACGAGGATGAACTCCTTGCAATGCTTTCACCCGAGGAGCTTAAGGAGCTCCAGAGTGAGATGGATGTTATTATTGCCCCAGATGAGAGGGTACCGGTGGGGCAGAGGCAAAAGGACCAGACGGAGAAGCCTCCAACAGGGACGTTCGACCACAGATCCCTGGTTGGTTACCTCTACTGGGAGAAAGAGTCCAACCGTATGCTTGAGGAAGAAAGAGTGCCTGCTATTCTGCTGCCCAGTGAGAAAGCTTTGAGGGAGGAAACTGAAAAGAAAGACGAGGAAGAAGATGTGGAATATGAAGTAATAGAGGAAGTCATTGAGGAAGAAGCTGTAGATGATACAGATGGAGAGGAAATTATAGAGATCATTGAGGAAATTGTTGAAGAGCTTGACGAGAGGGATGAAAACGATGAAAAGGACAAAGGGGTGgatgaggaagatgaggaagagGTGAAGTCACTTGTGAACAATGGCAAACGTGAAAATATAGACAAACATGTAGATCCTCTACACGCTAACagagaaaaagtgtcaaaaaacaaTGCAGATGACAATCAGCCTTTTCCAGACACAAAGGAGAAGAGTGAGAGCATAGCCCCAAAACACGGCACATCACAAgttgaagagaaagaggaaattcAAACTACAGACTCTTTGCTTCCCAAAGAGGCTCCAGAGGAGCCCAAAATAAGCAAAACCAATGATGAGCCCCTGccgaaagaagagagaaaaattaACAAATTACAACTTCCAAAGCTGGCATTCAACAatataaaaatgacatcaagACCCTCAGGAAATGAGACAAACTTGGAGTCGACGCTCGACAAAATCCGCAACAACAACCCGTCTATCACTGAGGTAAACCTCAACAACATAGAAAACATTCCCAAAGAGATGCTCTTGGATTATGTCAACGCTTTGAAGAAGAACAAACATGTGAAAACCTTCAGTATTGCCAACACTGGTGTTGATGAAAACATAGCTTTCAACCTGGCCAACATGTTACGAGAGAATCGCGGCATCACCACTTTGAATATTGAGTCCAACTTTGTGACCGGGAAGGGCATCGTCGCCATCATCCGCTGCCTCCAATTCAACGAGACTCTCACAGAGCTGCGTTTTCACAACCAGAGGCACATGTTGGGTCACCACGCAGAGATGGAGATCTCACGCCTGCTCAAGGCCAACAACACCCTCCTGAAGATGGGCTACCACTTTGAGCAGCCGGGGCCCAGGATGGTGGTGACCAACCTTCTAACCAGGAATCTGGACCGCCAGAGGCAGCTGAGGAAGGAGGagcaaaagcagcagcaagtgAAGGAGCAGAGGGAGCTGATGCAGATGTATGAGAACAGCCTTAACCTACCGCCTGGTTTACTTGAGATGCTCGGCTACATACCGCCTCTAGAAGTCCTGCAGGAGCATGGGCTTGTCCCACCCTCGTTTGAACTGAGCACTGTACCTCAAACCCACCACCAGACGGGACAGCCGGAGCCTCAGAAGGAACTCAAACACAAGAGCACTCCCAAACAACCCAGTGCCGAACCAGCAAACGCATTGAGGGACGTCCAGTTGAAGAGGACTCCCAAGAAACGTGACCCTTTTCTGGACCTGGACCCGAGGGATAACAGGAGACCAGAGAATGCAAGTTTCAAACTGAGGAAGACTCCCAAAGAGAAGGATGCAGGCAGTGGAGAGGTGGCAGATGAAAGAGAAAACCTGACTGACGTGATTAAGACTTTGAAGCCCATCCCTCGCAGACGACTGCCCCCTAAGGTTGATGTCACACCCCGCGACCAGCTCCTAGATGCAATCAAAAAGAGCAACGTGGCCTATCTCAAAGCTGTGCCGCTCCCTAAAGTTCTGGAATCAAGTGAAACGAGTCTCCTCTGAGGCTGCAACTTCAGCCGTTTGTTTTCTTCACCatatagttttctttattttacatgtATTCTCAAATGCACTGTGCAAAATAAGAGTGAACCATGCTTTCCTAACACATAAAACATATCGGCTGGTTGTTGTTTCAGTCTTGTGTTGTTATCACACTGAATGCTGTCTTTAGGAAGTTGTAACAAAGGTACAAATTACCAACACCCTATTCAATTTAAATCAAAGTAGATAACCTAATCGTCATTTGCTATTGCCATTGTTCATATATTTCTTATTGTGCAAAtaaaatagatttttattgtAGTTGTGTTAGATTAAATGTTAGATTTGCATTTGCTATAAAGAAATCTTCCACTTTT

Function

symbol description
lmod3 Predicted to enable tropomyosin binding activity. Acts upstream of or within muscle contraction and skeletal muscle thin filament assembly. Predicted to be located in M band. Predicted to be active in striated muscle thin filament. Human ortholog(s) of this gene implicated in nemaline myopathy 10. Orthologous to human LMOD3 (leiomodin 3).

NR:

description
PREDICTED: leiomodin-3

GO: NA

KEGG:

id description
K22030 LMOD; leiomodin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039800753.1 True 2661 mRNA 0.46 3 13531879 13534914
XM_039800754.1 False 2575 mRNA 0.45 4 13531879 13534915

Neighbor

gene id symbol gene type direction distance location
LOC120559206 LOC103355075,LOC100698283,LOC101476589 coding downstream 4682 13520484 ~ 13527197 (-)
LOC120559852 LOC104955226,LOC102789706,LOC101477062 coding downstream 12320 13510651 ~ 13519559 (-)
LOC120559332 NA coding downstream 84115 13445243 ~ 13447764 (-)
LOC120559331 LOC104955230,LOC106567269,LOC101065054 coding downstream 87933 13437589 ~ 13443946 (-)
nfascb NA coding downstream 96373 13414941 ~ 13435506 (-)
LOC120559773 frmd4b,LOC101475124,LOC102291948,LOC102193657,LOC102787077 coding upstream 486 13535401 ~ 13559677 (-)
mdfic2 NA coding upstream 74402 13609317 ~ 13616046 (-)
LOC120559678 LOC102200381 coding upstream 81961 13616876 ~ 13633635 (-)
LOC120559297 eif4e3,LOC101063498,LOC104943141 coding upstream 102148 13637063 ~ 13642433 (-)
LOC120558698 LOC103355245,LOC104927444,LOC105928575,LOC103467653,LOC107391259,LOC106918288,LOC101471341 coding upstream 190173 13725088 ~ 13739877 (-)
G49514 NA non-coding downstream 98784 13432519 ~ 13433095 (-)
LOC120558464 NA non-coding downstream 153016 13376627 ~ 13378863 (-)
LOC120558462 NA non-coding downstream 163506 13366263 ~ 13368373 (-)
LOC120558463 NA non-coding downstream 174074 13355117 ~ 13357805 (-)
G49447 LOC104955234 non-coding downstream 247629 13281987 ~ 13284250 (-)
G49624 oard1,LOC106909399 non-coding upstream 120616 13655531 ~ 13657376 (-)
G49673 NA non-coding upstream 645425 14180340 ~ 14184391 (-)
G49675 NA non-coding upstream 670674 14205589 ~ 14205824 (-)
G49676 NA non-coding upstream 673657 14208572 ~ 14208852 (-)
G49677 NA non-coding upstream 677295 14212210 ~ 14212497 (-)
LOC120558461 NA other downstream 118701 13406785 ~ 13413178 (-)
LOC120558437 NA other downstream 219150 13308360 ~ 13312729 (-)
LOC120558587 NA other downstream 278271 13250986 ~ 13253608 (-)
camta1a LOC103354943,LOC102299287,LOC102779653,LOC102211199,LOC106922242,LOC104961361,LOC107390471,LOC108232047,LOC103144055 other downstream 310541 12924458 ~ 13221338 (-)
prickle3 prickle3,LOC102790576 other downstream 1091970 12415603 ~ 12439909 (-)
zgc:66479 NA other upstream 212488 13747403 ~ 13753866 (-)
smim29 LOC104942556,LOC104932788,LOC105416285,LOC106572343,LOC105022745 other upstream 504820 14039735 ~ 14125823 (-)
LOC120558710 NA other upstream 605465 14140380 ~ 14145222 (-)
LOC120558545 LOC104942567,LOC103358644 other upstream 881421 14416336 ~ 14432994 (-)
G49766 LOC103358643,LOC101487433,LOC103144045,LOC101072611,LOC101159823,LOC107094832 other upstream 997209 14532124 ~ 14534605 (-)

Expression


Co-expression Network