LOC120559208 (atp9a)


Basic Information

Item Value
gene id LOC120559208
gene name atp9a
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 8883251 ~ 8933289 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039800758.1
gtgtctgtgtgtgagtgacagcTGGGAAGCCTCCGCCCAGTACCGCGCTACAGCCAGGCTGCCTCCAGCCTCCACCCGCTACCAGGAGCTGCAGGAATGACCGATAATATCCCCCTACAGCCCGTGAGACGGCCGAAAAGACACGACGGTAAACACAGAAATGGGTGCTGCCCGTGGTCGAGATGCTGTGGCATGGGGGACTTCCGTCCCCGCACCGTGTGGCTCGGCCACCCAGAAAAGAGGGAGCAGAGGTACCCAAGGAATGTCATTAACAACCAGAAGTACAACTTCTTCACCTTCCTGCCTGCGGTGCTGTTCCATCAGTTCAAGTACTTCTACAACTTGTACTTTTTGCTTTTAGCTTGCTCTCAATTTATCAATGAGCTACGCTTGGGTGCCCTCTACACCTACTGGGTCCCGCTGGGTCTTGTTTTGGCTATTACCATCATTAGAGAGGCAGTTGAAGAAATAAGATGCTACATTCGAGACAAAGAAATGAACTCTCAGATTTACAGCAAGCTTTCGACAAGAGGCACAGTGAAGGTGAAAAGCAGCGGCATTCAAGTCGGAGATCTTATAATCGTGGAAAAGAACCAGCGTGTTCCTGCTGACATGATCTTTTTAAGGACCTCTGAAAGAAATGGATCCTGTTTCCTGCGGACTGACCAGCTGGATGGAGAGACGGACTGGAAACTACGCCTCCCAGTGGCCTGCACACAGAGACTGCCAACCGCTGCTGACCTTCTACAAATCAGATCATATGTGTACGCAGAAGAACCAAACATTGATATCCATAACTTTATTGGAACTTTCACCAGGGAAGATGGAGACCCCCCAGTCAACGAAAGTCTCAGCATTGAGAACACCCTGTGGGCCAGCACCGTAGTTGCCTCCGgcACAGTGGTGGGGGTTGTGATTTACACAGGCAAGGAGCTGCGCAGTGTCATGAACACCTCCAACCCGAGGCACAAGGTGGGTTTGTTTGACTTGGAAGTGAACTGTTTGACCAAGATCCTGTTTGGGGCCCTTGTGGTGGTGTCACTGGTCATGGTGGCCCTGCAGCACTTTGCCGGCCGTTGGTACCTCCAGATCGTTCGCTTCCTGCTGCTCTTCTCTAACATTGTGCCGATCAGTTTGCGTGTCAACCTGGATATGGGAAAGATGGTTTTCAGTTGGATGATTAAGAAAGACTCTAAGATCCCTGGGACGATGGTGAGGGCGAGCACCATACCTGAACAGCTTGGACGCATCTCCTACCTGCTGACTGACAAAACAGGAACTCTTACTCTGAACGAAATGGTGTTCAGGCGCCTCCATCTTGGAACTGTGGCATATGGGATGGACTCGATGGATGAAGTACAGAGCCACGTGTTCAGCGCCTACACACAGCCCAGCCATGACCTTCCAGCCTCCAGGGCTCCAGCAGCCACCAAGGTCCGCAAGACCATCAGCAGCAGAGTTCACGAGGCAGTGAAGGCCATCGCCCTGGTGCACAACGTGACTCCCGTGTACGAGGCCAACGGTGTGACGGACCAGGCCGAGGCGGAGCAGCACTATGAAGACACATGCAGAGTTTACCAGGCCTCCAGCCCAGACGAGGTGTCGCTGGTGCAGTGGACGGAGAGTGTCGGTCTGACACTGGTAGGAAGAGACCAGTCCTCCATGCAGCTGCGGACCCCTACTGGACAAATCCTGAACTTCACCATCCTGCAGATATTCCCCTTCACCTATGAGAGCAAGAGGATGGGCATCATAGTGCGAGATGAGTCTACAGGAGAAATCACCTTCTACATGAAGGGTGCTGACGTGGTGATGGCAGCTATCGTCCAGTACAACGACTGGCTGGAAGAGGAGTGCGGGAACATGGCGAGGGAAGGCCTGAGGGTCCTTGTGGTCTCAAAGAAGTCCCTGACAGAGGAGCAGTATCAGGATTTTGAGGCCCGGTACGTCCAGGCCAAGCTCAGCGTCCATGACCGCTCTCTGAAGGTGGCCACAGTGATTGAGAGtctggagatggagatggagctGCTGTGTCTGACTGGGGTGGAGGACCAGCTCCAGACGGATGTGAGGCCAACCCTGGAGATCCTCCGCAACGCAGGCATCAAGGTTTGGATGCTGACAGGAGACAAGCTTGAAACGGCCACATGCACCGCTAAGAACGCCCATCTGATCACCCGCAACCAGGACATCCATATCTTCAGACCCGTGACAACACGAGGGGAAGCCCACCTGGAGCTCAACGCTTTCAGGAGAAAACACGACTGCGCGCTCGTGATATCAGGGGACTCGCTTGAGGTCTGTCTGAAATACTACGAGTACGAGTTCATGGAGCTCGCTTGCCAGTGTCCCGCTGTGGTTTGCTGCCGGTGTACCCCCACTCAGAAGGCTCAGATAGTCCGACTGCTGCAAGAGCGCACAGGAAAACTCACCTGCGCCGTAGGGGATGGAGGAAACGATGTCAGCATGATCCAGGAAGCCGACTGTGGCGTGGGAGTGGAGGGAAAAGAAGGAAAGCAGGCCTCGCTGGCCGCTGACTTCTCCGTGACTCAGTTCAAACATTTAGGTCGTCTCCTCATGGTCCACGGGCGGAACAGCTACAAAAGGTCTGCAGCCCTCAGCCAGTTTGTCATCCACAGGAGCCTGTGCATCAGCACCATGCAGGCGGTCTTCTCATCTGTTTTCTACTTTGCTTCAGTCCCACTCTACCAAGGATTCCTGATTATTGGCTACTCCACTATCTACACCATGTTCCCTGTTTTCTCCCTGGTGTTGGACAAAGATGTTAAGTCAGAGGTTGCCATGTTATACCCAGAATTGTACAAAGATCTCTTGAAGGGCCGACCGCTATCTTTCAAGACTTTTCTAATATGGGTCCTAATAAGTATCTATCAAGGGAGCATCATCATGTACGGGGCGTTGCTGCTCTTTGAGTCCGAGTTCGTCCATATCGTTGCCATTTCCTTCACCTCTCTGATCCTGACGGAGCTGCTGATGGTGGCCCTCACCATCCAGACGTGGCACTGGCTCATGATAGTGGGCGAGCTCCTGAGCTTGGCCTGCTACGTCGCCTCGCTCGTCTTCCTGCACGAGTTCATTGACGTTTACTTCATCACCACGGTATCGTTCCTGTGGAAGGTGACTGTCATCACGCTGGTGAGCTGCCTGCCTCTTTACATCCTCAAGTACCTCCGCAGACGCTTCTCCCCGCCCAGCTACTCCAAGCTGACCACTTAAAAGACTGCGAAGGAGACTGTTGGGGAAACAGAAAGGCGCCCCTGTCTTCGTCCAGCAGAGCCTGCGCTTCTACCGGAGGAGTCAAACATGGATTCATCCcctttttaatttgttgtgAAAAGTAACACGCGGAAACGCGAAAGACGGGGACAACTTAGTCAGGGACAGGTCGCTTACTGAGAGGGAGAGTTTGTGTTTAAAAGCAGCGTTGCTTGCTACACGTGTTTGATGCAAAGACTAACCGATGATTTCTCTCTGTGGAGAAAACACCTGCAGTGAATTGTAGGTTggtagttagttagttaaacCGAGCATAAAAAGCGTCCTGaacagaaaatgtaaatatgtaatgTATAAAACACGCTGCTATTTAGCCTAGTATGTGATCAATTAAGGGACAGAATCAGTTCAGTAAATTATGCAGATCCGGTTTGTTTTATAATGTCTCAAATTCATATCAAGGGAAGTAACTGGAAAAGTTGGATGTCTCTCTTCCTCGGAGCTGTACCGTAGATGTGTTATTTGGGCTGGAAATACATTTTCTCCAGTTTCCAGTTCCATCTGAAATTAGTCAAAGCGTTAACATTGTTAGACACTGAAATAGACGTAGCATTCTCACTCAGGACTCGATTCACACTCTCCTCAAACTGATTTCAAAAATGGAGTTTAAGAATTACAGTAtgtggtgaaaaaaaacaaaaaaaaaaaagtttactgGCTAGAGTAGACTTTGCATAAAACACACGTCTGcaagtttgtgtatttgtttgtgcgtCACGGCGATGGTCCAGCCCGACACGGCGGACGTGGTGTGGTGGATTATTTTTAGCATGACCCCGTGGTGTCTGGTATTAAATCCGTCTTTGTTTTCTTGGTACGGGCCTCGAGGGGTTGTTAGTGTTTGTGGAGCGCGGTCAAAACAGCCACAAAAGGAGTGTCGGTTTATTTGGAGTCGAAAACCTTCCGCCGGGGGCTCCCGACAGCCCCTCATGCGGCTGCTCGGCAGGCCAGCACCCAGGCCACGCTTTTTCACCCAGCATTGCATGATGACTCACTGTACCAGTGACCTAAAGCCATAAGTGAAAACCTTCTGCGACCCGAGTTCagctccccccctccctttcaTGTGGTCTAATCCAGGGGGCCCCCTCATTGCTCACTTCTGCTATAACCTCCATAGTTCAGctgggatggaagaaaaaaagggatCAAATCTCCCCTCGGTGAAAATCCAATGTGAACATTGTCGATAAGCAGTACCGCACGTTGAGAGAAAGAACAGATATGTTAACCACAGCTCATATTTCAATTCGCTGGTGGAGATACTGTAAATAATCACCAACTAACAGAATAACATGGCTacactctttctctcacttatTTCAAATGACTTTGAAAAAGGATTTCAATTTAGTTGTAAAACTTGAATTAACTTTTCTTATATGACTTGATTAACCTTAATGTGTCGACCCAGGTGTCCTAAGTAATAATTTCTCTCCTATGTTCAACTCCGTTGTTAATCCCTACTGACTTCAGTACGCAGTTTGCACAGAATTTTGTTTTGTACAACCGATCAATTCTATTTTTTATGTCGTAATAGAATCGCAAAAAACATTAGGCTAAAATGATTTAGTtgcttgttttttattattatttattaacgTGTTATTTTATGGTGTTGATTGCACTGAAATGGGCAAAACAAAAAGGGAGAATTGCGTTGATGTCAATGTTGTGATGATGATTAATAAATCTTGTGTTTTCTATT

Function

symbol description
atp9a Enables protease binding activity. Involved in negative regulation of exosomal secretion; regulation of endocytic recycling; and regulation of retrograde transport, endosome to Golgi. Located in several cellular components, including endosome membrane; perinuclear region of cytoplasm; and trans-Golgi network membrane.

NR:

description
PREDICTED: probable phospholipid-transporting ATPase IIA

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0006812 cation transport biological_process
GO:0045332 phospholipid translocation biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K01530 E7.6.2.1; phospholipid-translocating ATPase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039800758.1 True 5005 mRNA 0.49 28 8883251 8933289

Neighbor

gene id symbol gene type direction distance location
nfatc2a nfatc2 coding downstream 8129 8849910 ~ 8875122 (-)
kcng1 kcng1 coding downstream 42245 8792534 ~ 8841006 (-)
src LOC103385228,LOC101479745,LOC102203088,LOC103361614 coding downstream 94875 8746967 ~ 8788376 (-)
mical1 LOC103361624 coding downstream 140223 8716760 ~ 8743028 (-)
camk1gb NA coding downstream 183074 8682631 ~ 8700177 (-)
sall4 sall4 coding upstream 4450 8937739 ~ 8943807 (-)
zfp64 zfp64 coding upstream 52683 8985972 ~ 8990311 (-)
znf217 NA coding upstream 235593 9168882 ~ 9175214 (-)
bcas1 NA coding upstream 247398 9180687 ~ 9198974 (-)
cbln4 cbln4,LOC102783801 coding upstream 354259 9287548 ~ 9292138 (-)
LOC120558360 NA non-coding downstream 136739 8743335 ~ 8746512 (-)
G48153 NA non-coding downstream 175286 8707540 ~ 8707965 (-)
G48128 NA non-coding downstream 228932 8611698 ~ 8654319 (-)
G48010 ttpal non-coding downstream 549730 8330117 ~ 8333521 (-)
LOC120559498 NA non-coding downstream 586783 8281947 ~ 8296468 (-)
G48255 NA non-coding upstream 143786 9077075 ~ 9088743 (-)
G48285 NA non-coding upstream 277635 9210924 ~ 9212825 (-)
G48306 NA non-coding upstream 349007 9282296 ~ 9282522 (-)
G48311 NA non-coding upstream 351628 9284917 ~ 9285252 (-)
G48430 NA non-coding upstream 631675 9564964 ~ 9565214 (-)
LOC120559289 LOC106911506,LOC106515592 other downstream 177768 8702965 ~ 8705483 (-)
ada ada other downstream 473517 8381117 ~ 8409734 (-)
G47934 LOC103363443,LOC106920718,LOC105016959,LOC102211704,LOC108251018 other downstream 695700 7771936 ~ 8187551 (-)
G47937 gpr182,LOC103467901,LOC103130457,LOC106963994 other downstream 996401 7815151 ~ 7886850 (-)
G47814 NA other downstream 1384449 7485427 ~ 7498802 (-)
LOC120558858 LOC103370645,LOC100704217,LOC102196282,LOC102305949,LOC101463755,LOC102780123 other upstream 445711 9379000 ~ 9408403 (-)
plekhg5b plekhg5 other upstream 493917 9427206 ~ 9519455 (-)
olfml3a LOC103359736,LOC104967461,LOC102308353,LOC101465779,LOC102785892 other upstream 756440 9689729 ~ 9724134 (-)
c1qtnf12 fam132a other upstream 794585 9727874 ~ 9753686 (-)
hipk1a LOC103359735 other upstream 833022 9766311 ~ 9785241 (-)

Expression


Co-expression Network