slc52a3 (slc52a3)


Basic Information

Item Value
gene id slc52a3
gene name slc52a3
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 11940260 ~ 11945510 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039800835.1
tgttaGGGCAAGCAAATGCATGTCAGCTGAGTGAAAAGGGTGCTTTGAAGTGATTCAGCACTGAACTTGACCTAATTAAGGGTGGGTGCAGTAAAGAAAGCTCAGTGGATATGGACAATGCCCTCTGTTATCCAGTGGAGCTGATCAACTGCTGGAGTGGACTCTGACCTACCCAGAAGCCACAAGTGATTCTCAtcagtgtgtgcatgttaaAACAGCCAAAGGAGGTCTGTCGCTAACCTCTATGTAAGATGACAGCAAGTCATATTCAGCGCCTCCAGGGACTGAAGAAGCTTGCATGACCCACAGCAGAGGAGGAACCATTTGGGAAGGCGGCTACTTCTTCTGCAAACTTACTTCAGACTGATCCGGCTGCACCATGGCCCTGCTCGTCCACATGCTGGCCTGTGCCTTTGGCCTGGGCTCGTGGGTGGCAGTGAACGGTCTGTGGGTGGAGCTGCCGCTCATCGTCAACACTCTCCCAGAGGAATGGGATCTCCCCTCCTACCTGACAGTCATCATCCAGCTGGCCAACCTGGGACCTCTGCTGGTCACCCTCATGTACAAACTGTGCCCGGGTCGTCTCAAAGAGCGCATTGTCATTTACTTCATCCTCTCCATCGGCATCCTCTCCTGCATCCTGCTTGCCTTATTCTGGGACAAGACTACGACAGTGGCCGGGGCGTCACATAGCACCGCCTTCTTCATCATcaccttcttcctctctctggtgGATTGCACCTCCTCAGTTACCTTCCTGCCTTTCATGATGCAGCTTCCAGCAAAATACATCACCACATACTTTATCGGAGAGGGGCTAAGTGGTTTCATTCCTGGCATAGTCGCTCTGGGACAAAGTGTGGGCATCACCAAATGTGTCAACGCCTCTCAAACAGCAGGAAACCAGACAGGCGGGGACACGTGGTCATTACATACAGAGAATCTTCCTCCAAATTTTTCCACCGAGGTGTTTTTCTTCCTCCTAGCAGCCATGATGTGCATAAGTCTGGCTGCTTTTGTTGCACTGAACAGGCTTCCTCGGACATTCGagctgtccagtgaaaacctcGTGCCAGACACCGTTGCCTCTGTCAGCTCCGGCCTGGAGAACCCGGGAGCAGAGACTGATGGAGAGGGTGTAAAATGCCAGGGTGAGGGGGCAGCCCAGAGCAAGCTTCTGCTGGCTGGCCCAAAACACTCTGTGTACCAGCTGACCTTCATCTACTTTATGGTGGTGTGGGTTAATGGTGCAACCAACGGCGTGCTGCCCTCTGTGCAGACGTACTCCTGTAAGCCCTACGGGAACCTGGCCTATCACCTCTCTGCTGTTCTGGCAGCAGTGGCCAACCCAGTGGCTTGCACCATTGCAATGTTCTTCAAAAACAGGTCACTGGTGTTTCTTGGCGTGCTGACAGCATTGGGGACAGGATTTGGCAGCTATAACATGGCTATGGCAGCTATGAGTCCATGTCCTTTGCTTCAGGGGTCTGTGGTGGGAGAGATGATCATTGTGCTCTCATGGCTTTTCTTCACTGGAACGCTGTCTTATGTCAAAGTAATGGTGGGTGTCATCCTGAGAGACCGGAGCCACAGCGCCCTGGTCTGGTGCGGAGCTGCAGCACAGATCGGCTCGCTAGTCGGCTCGGTCACGATGTTCCCGCTGGTTAACATCTACCGGCTCTTTAAGTCAGGGGACTTCTGCAGCACTAAATGTCCTTTATAACACTGAATCTGAGAAGTGTAGTACTGAGGAGGCTGGAGACACTCTCAGctttgtcatttttttcacctTCTTTGCACTTAACTGTGTTAACTTGTGTTAAACTCATTTGATACACTATGATGGAAAAAGCTATTAACTTgtataaatattaaaatttaaaaagttcAACACTGGA

Function

symbol description
slc52a3 Predicted to enable riboflavin transmembrane transporter activity. Predicted to be involved in riboflavin transport. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Human ortholog(s) of this gene implicated in Brown-Vialetto-Van Laere syndrome 1 and Fazio-Londe disease. Orthologous to human SLC52A3 (solute carrier family 52 member 3).

NR:

description
solute carrier family 52, riboflavin transporter, member 3-A-like

GO: NA

KEGG:

id description
K14620 SLC52A3, RFT2; riboflavin transporter 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039800835.1 True 1898 mRNA 0.51 5 11940260 11945510

Neighbor

gene id symbol gene type direction distance location
scrt2 scrt2,LOC108249568,LOC102228875,LOC107391295 coding downstream 32647 11898818 ~ 11907613 (-)
tcf15 tcf15,LOC104919924,LOC103354327,LOC100694468,LOC102295168 coding downstream 59640 11878352 ~ 11880620 (-)
LOC120558412 NA coding downstream 68799 11865707 ~ 11871461 (-)
slc13a3 slc13a3 coding downstream 76566 11855050 ~ 11863694 (-)
LOC120559814 NA coding downstream 92173 11844711 ~ 11848087 (-)
LOC120559253 ube2v1,LOC102081483,LOC108249566,LOC101171992,LOC106536681,LOC107391298 coding upstream 7665 11953175 ~ 11957391 (-)
LOC120559249 ptpn1 coding upstream 40900 11986410 ~ 11999445 (-)
LOC120559362 LOC102786474,LOC103354471 coding upstream 158381 12103891 ~ 12119146 (-)
LOC120558333 NA coding upstream 278794 12224304 ~ 12230288 (-)
dnajc5aa dnajc5,LOC104933326,LOC101169856,LOC107090698 coding upstream 287595 12233105 ~ 12237737 (-)
G48911 NA non-coding downstream 324551 11607970 ~ 11615709 (-)
G48910 ankrd52 non-coding downstream 333646 11605733 ~ 11606614 (-)
G48907 ankrd52 non-coding downstream 339752 11600292 ~ 11600508 (-)
G48886 cs non-coding downstream 361272 11576539 ~ 11578988 (-)
G48903 LOC102783589,LOC107599367 non-coding downstream 367271 11564071 ~ 11572989 (-)
G49024 NA non-coding upstream 57757 12003267 ~ 12063255 (-)
G49084 NA non-coding upstream 174148 12119658 ~ 12121550 (-)
G49092 NA non-coding upstream 195425 12140935 ~ 12141414 (-)
G49112 NA non-coding upstream 201218 12146728 ~ 12147033 (-)
G49118 NA non-coding upstream 266233 12211743 ~ 12213541 (-)
srxn1 srxn1 other downstream 49121 11885965 ~ 11891139 (-)
LOC120558961 NA other downstream 431923 11503827 ~ 11508337 (-)
G48697 NA other downstream 1206373 10641405 ~ 10733887 (-)
G48523 NA other downstream 1914435 10024994 ~ 10025825 (-)
hipk1a LOC103359735 other downstream 2155019 9766311 ~ 9785241 (-)
peds1 LOC104919928,LOC103354371 other upstream 13869 11959379 ~ 11979035 (-)
G49083 LOC103354491,LOC102226477,LOC108232148 other upstream 181376 12126886 ~ 12128425 (-)
dnmt3ba NA other upstream 201904 12147414 ~ 12169209 (-)
ppdpfa LOC104933328,LOC101073585 other upstream 275224 12220734 ~ 12223028 (-)
fkbp1aa LOC100692950,LOC107391264,LOC103354614,LOC101168621 other upstream 443471 12388981 ~ 12391677 (-)

Expression


Co-expression Network