LOC120559249 (ptpn1)


Basic Information

Item Value
gene id LOC120559249
gene name ptpn1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 11986410 ~ 11999445 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039800845.1
TCTGATAAGGATATTTAAATACAGATTCACACCCGGAGAACACGGAGCGGATTAtaatctcttaaaaaaaaaaaaaaaacacattctgcTCTTTAACAGCCATCGGCGGACGGCGGACGGCGGCTACACCGTGTAGGAGGAGCCAGCGGCGTGTTTCCGCTACACCAGGCCGAGAGAGTTAATCTATGCTGCCGTACTGAGAATTACAGGATATTGGTGGAACAGTTCGCAGCTATTGCGAGACACTGTTAGAGTACAAATTGTTTAATCACCGGGGAGCTGCGGTTGTCCATATCTGgggaaaaagaagaggaaggagtgGCAGCTGGACTGTCAGCAATGGAAGCCGAGTTTCGGGAAATCGATGACAACGGGAGTTGGAGCGCCATTTATCAGGAGATTCGTCAGCAGTCATGTGAACTCCCTTGCAAGGTTGCCAAATTACCTGAAAACAAGAATCGGAATCGTTACAGAGATGTTAGCCCATTTGATCACAGCAGAATATATCTGCAGCTGGGTACGAATGACTACATTAATGCCAGCCTGATAACAGTAGAAGAGGCAAAGAGGAACTACATCCTCACTCAGggacCCCTTCCAAATACATGTGGCAACTTCTGGGAGATGGTGTGGGAGCAGAGGTCCCGCGGTGTGGTGATGCTGAACCGAGTCATAGAGAAAGGATCTGTGAAATGTGCCCAATATTGGCcccacagagaggagagagatgctaTCTTTGAAGATACCAATTTCAAGCTCACCCTCATCTCAGAGGACATCAAATCTTACTACACAGTCCGTCAGCTGGAGTTGGAAAATCTGTCTACTCAAGAGACGCGTGAGATTTTACATTTTCACTACACCACTTGGCCTGACTTTGGGGTACCGGAGTCTCCTGCCTCCTTCCTTAACTTCCTGTTCAAGGTGCGGGAGTCGGGTTGTCTGAATTCAGACCAGGGACCAGTGGTGGTGCACTGCAGCGCCGGCATCGGACGCTCTGGGACCTTTTGTCTTGTGGACACCTGCCTCTTACTGATGTCCATCCGTAAGGACCCGTCTTCAGTGAGTATTCGTGATGTGCTGCTGGAGATGCGACGCTATCGAATGGGCTTGATTCAGACCGCAGATCAACTTCGCTTCTCCTACCTTGCGGTCATTGAAGGTGCAAAGTACATCAAGGGAGATGCATCTCTGCAGgAGTGGAAAGAGCTCTCAAACGAGGAAGATGATCCTCCAGAGTTCACCCCtccgcctcctcttcctcctcccagAGACCCCCACAACTGCAAAGTTGAGCCATCCTTTTTCCCCGAAAATGTTAAGATCATTCAACAGATGGAGATCCACAGTCTGGGGACCTCACAAGAGTCGGCGCTGCGAAAGAGGAACATTGCCGCCCCCCAGCCTCCTCCTGCCGGTGCTGAGCAGCTCGATGACCACATGGGTATCGTAGATCATACCTCCAAAGCTCCAACCAAATCCCAGCAGCAGGAGACGGAGGAGGCAGCGGAGAAGCCAAAGGAAAGCCCTCCTGTGCCGGGGACTTGGTCCCCTCTACTAACCAACGTGTGCCTGTGCACGGCGCTGGCTCTCAGTGCTTACGTCTGTTATCGAGCCTGTTTCCACTGATGTctgtccttcctcctcctttctgttcctccctgtctctccaCTGATGTTGCAAAGTGGACTAGGCTTGCCAATCAGCCTGCTTTGACTTTGGTTTTACTCTGCGAGTGAGTGGATTATTTGGACTTCAGCAGATTCAGGTTCACCAGGGGTTGAGGTGTTGAGGGGTTGGCTGGTTGGGAATAACAAGCTTCCAATCCTCATTACCCACCCAACCATTCTTTCAATATGTCACCATGGATGCTCAGGGCCTCCGTTTTTCAGGTTTGACATCCCAAATATGTGTGCCGACTGAAACGCAGACTCAACAGACGATACGTGTCTGTTGAGGAAAAGGGTTTTGTTTTAGCTCCCCTGTTTTGTGAACCAGGATGAATGGCCTGTCAGCCAATATTTTACACGCGTCTCCTCTCTTATTTACTAAATGACACTTGTATGCGTTCTTCCATTTCATCCTTTACAGATATGTCCGTTAGGATTTCacctttttcccccccacctttttctttcttttcctgacACAAATTATCAGAAATCAAAGAGTCAGATTtttgaccaaaaaaaataaataaaaaaatgccagTATGGGAGACACTTAAAATAAATCAAGTGTTATTTTGTTATGGGTCCATATTAAACCCAACAGTAAGGTGAAGTATGGGTTATGGGCAGCCCTGTGCCCACTAGATAAGAGATGCATGCTGGTGTGGGCATTGAATTATCTGTCCTCACTGGCGGCCTGTGTAGGTCTGCAGGAGGCATGCTAGTtgagtacatacagtatgtgtgtgtgtgtgtgtgtgtgtgtgtttgtacatgtaCATTTGCGTGAGTGGTAGTTAGTGGAGCTTTCTACTGATGCTTGAGTTAAATCTACTCAGTGAGAAATATTAATATAACATTTACAGTACGTCAAATATGAGATTTAGACTGAGTTGCCTCCTGGTAATTGATTCCCTCTGCGTTTTCTCTCCCTGGTGGCTCAACAGTGACAAAATGGTGCAGGGACAGGGTGGCATGTCCCATTCTCCATTAGCCTGGCATTCTCAAATTGATATTagctaaatcttttttttcaataattttaaTCAAGTTATAACACCTGGCTTTTACTTTTAACTGTTTTGGAGAACCTCTTTTTAGTCACAGTGGATACAAATGCGTGGAGGCTTTTCATGCCAAATGTGTAACATAGCCTGAATGCAACTGTTGTATAGTAATGTGGGTTCAGTTACACACAAGAATGCCAGCTTATTGAGACACAAAGTTAGCTAACCCCCAACTCTTTTCGCGAGCAATACAAATACTTAGTAATGTGTCACCCTTTACTTTATCAAACTCTTGAGTTTGAACAGGGAACCAGGGATTTTGAACAAACCAAAAATCAAACACCAGCACAGCGatgaaaacaatacactgtagtGATGATCCGTTTCCGTATCATGGCGTGGCCCTGAGCTGGCAATATTgttttgtatgatttttaagtaagtttttgtttttagcatGCT

Function

symbol description
ptpn1 Predicted to enable protein tyrosine phosphatase activity. Predicted to act upstream of or within protein dephosphorylation. Predicted to be located in endoplasmic reticulum. Is expressed in liver. Human ortholog(s) of this gene implicated in type 2 diabetes mellitus. Orthologous to human PTPN1 (protein tyrosine phosphatase non-receptor type 1).

NR:

description
PREDICTED: tyrosine-protein phosphatase non-receptor type 1

GO:

id name namespace
GO:0035335 peptidyl-tyrosine dephosphorylation biological_process
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG:

id description
K05696 PTPN1, PTP1B; tyrosine-protein phosphatase non-receptor type 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039800845.1 True 3140 mRNA 0.46 9 11986410 11999445

Neighbor

gene id symbol gene type direction distance location
LOC120559253 ube2v1,LOC102081483,LOC108249566,LOC101171992,LOC106536681,LOC107391298 coding downstream 29019 11953175 ~ 11957391 (-)
slc52a3 slc52a3 coding downstream 40900 11940260 ~ 11945510 (-)
scrt2 scrt2,LOC108249568,LOC102228875,LOC107391295 coding downstream 78797 11898818 ~ 11907613 (-)
tcf15 tcf15,LOC104919924,LOC103354327,LOC100694468,LOC102295168 coding downstream 105790 11878352 ~ 11880620 (-)
LOC120558412 NA coding downstream 114949 11865707 ~ 11871461 (-)
LOC120559362 LOC102786474,LOC103354471 coding upstream 104446 12103891 ~ 12119146 (-)
LOC120558333 NA coding upstream 224859 12224304 ~ 12230288 (-)
dnajc5aa dnajc5,LOC104933326,LOC101169856,LOC107090698 coding upstream 233660 12233105 ~ 12237737 (-)
ythdf1 LOC104938233,LOC103354577,LOC106952594,LOC100697389,LOC102786472 coding upstream 260552 12259997 ~ 12270531 (-)
nkain5 LOC103354565,LOC101477820 coding upstream 272042 12271487 ~ 12280037 (-)
G48911 NA non-coding downstream 370701 11607970 ~ 11615709 (-)
G48910 ankrd52 non-coding downstream 379796 11605733 ~ 11606614 (-)
G48907 ankrd52 non-coding downstream 385902 11600292 ~ 11600508 (-)
G48886 cs non-coding downstream 407422 11576539 ~ 11578988 (-)
G48903 LOC102783589,LOC107599367 non-coding downstream 413421 11564071 ~ 11572989 (-)
G49024 NA non-coding upstream 3822 12003267 ~ 12063255 (-)
G49084 NA non-coding upstream 120213 12119658 ~ 12121550 (-)
G49092 NA non-coding upstream 141490 12140935 ~ 12141414 (-)
G49112 NA non-coding upstream 147283 12146728 ~ 12147033 (-)
G49118 NA non-coding upstream 212298 12211743 ~ 12213541 (-)
peds1 LOC104919928,LOC103354371 other downstream 7375 11959379 ~ 11979035 (-)
srxn1 srxn1 other downstream 95271 11885965 ~ 11891139 (-)
LOC120558961 NA other downstream 478073 11503827 ~ 11508337 (-)
G48697 NA other downstream 1252523 10641405 ~ 10733887 (-)
G48523 NA other downstream 1960585 10024994 ~ 10025825 (-)
G49083 LOC103354491,LOC102226477,LOC108232148 other upstream 127441 12126886 ~ 12128425 (-)
dnmt3ba NA other upstream 147969 12147414 ~ 12169209 (-)
ppdpfa LOC104933328,LOC101073585 other upstream 221289 12220734 ~ 12223028 (-)
fkbp1aa LOC100692950,LOC107391264,LOC103354614,LOC101168621 other upstream 389536 12388981 ~ 12391677 (-)
prickle3 prickle3,LOC102790576 other upstream 416158 12415603 ~ 12439909 (-)

Expression


Co-expression Network