LOC120559253 (ube2v1,LOC102081483,LOC108249566,LOC101171992,LOC106536681,LOC107391298)


Basic Information

Item Value
gene id LOC120559253
gene name ube2v1,LOC102081483,LOC108249566,LOC101171992,LOC106536681,LOC107391298
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 11953175 ~ 11957391 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039800848.1
TGGACGCGACGCTCTGCGTTTCTTCAACGCGCACGCACCATTGTCCATGGTCCACAATGGCAAAACTACGTGCGCGCTCCTGCTGTGTAGCGACAAGATGGCGGTCGCCGCCGGATTAGGTAAATGCGTTAAAGTCCCTCGCAATTTCCGGCTCCTGGAAGAGCTGGAGGAAGGCCAGAAAGGTGTGGGAGATGGAACAGTGAGCTGGGGTCTGGAGGACGATGAAGACATGACCTTAACACGGTGGAGAGGGGTGATTCTTGGCCCTCCAAGGACGAGCTATGAAAACAGGATGTACAATCTGAAGGTTGAATGTGGGCCAGAATACCCAGAGTCACCACCGTTTGTCAGATTTGTGACAAAGATAAACTTGAATGGCGTGCACACCTCCAACGGTGTGGTTGACATGCATGCAGTGActgcactggccaagtggcagAACTCCTACAGTATCCGGATGGTGCTGCTGGAGCTGCGAAGGCTCATGACCTGCAAGGAGAACATGAAGCTTCCTCAGCCACCCGAGGGCCAGATCTACAGCAACTGAGCCCCTGCTACTTTTGCCTCCATATTTTTCTCCCTTCCCTCCCCCAATTCCCAACTCTTCTGTTTTGCTTTTCATCCCTTTATCCCCATCCTCTCCGCCATCCTCTTCAACCTCTTGCCAACACCTTGCTGTgagcacacacagagcagagtACTTTTACAATTATTACTTATTACAGATACATGCAAacatacgtacacacacacacacacacacacacaatcacaataaCGGACAAATGCAAatctacatacacatatatctTTATACACACACTTATTAGCGTTCATGAGTCATTCCAggccctcccctccctctcccatcACTGGAGCTCTGGGTGGACTCAATGTGACAAGTCCTCAGTCCACACCAGATACGATCATTCGAATACTGTACTGTtactaatctttttttttttattatttgtttaaaaaaaaaaaaatgcagattgTACAATAACATAAATAATCTTATTGAGTGTACCTCCTCTGTGTGTTGCctttttgtaacattaaaaaACGGCCACTTAACATTAACGCACATAGTTCACTAAACATACTGTTAGTTATTAGATAATCTTCAAGGTGTACAAATAAAGAAAACCCAAATGCATTCAACTTGGCAAATAATGTGAAGTATGTATTGTCATGTGGCCAGATGTCTAATGAAATATTTTCCTCCGTGTGTGATTGCACAGAATAAATGTTCTCACGCAGTCCTGTTGTAAATGCATGACTGCAGCTCAGCAAGGTGCCTGGAAGTGATCACCTTTTGTCacacatggctttttttttttcttctatgtAAGAATTGTCCAAAGTGAACATTGTGTATCTATACCACTATATCTGATTATAATATGCATAGTAGCATAGTATACAAGTCTACTGTAGGTCTGCAGAAGTCCCAGTTTTAAACCGTGCTTGACAATATAGAAGTGAAATCAGCTACCTCTTTTGGTCCTGTGTAACGTCAGAGGAGTTCATCTGACTTGTGAAACTGTATTTGCTACTCCATGTGAAAATTTGTTTAACTTTCGCCACTTCTTTCATAAAACTTAATTCATGCTTTTCA
>XM_039800849.1
TGGACGCGACGCTCTGCGTTTCTTCAACGCGCACGCACCATTGTCCATGGTCCACAATGGCAAAACTACGTGCGCGCTCCTGCTGTGTAGCGACAAGATGGCGGTCGCCGCCGGATTAGGCGTTAAAGTCCCTCGCAATTTCCGGCTCCTGGAAGAGCTGGAGGAAGGCCAGAAAGGTGTGGGAGATGGAACAGTGAGCTGGGGTCTGGAGGACGATGAAGACATGACCTTAACACGGTGGAGAGGGGTGATTCTTGGCCCTCCAAGGACGAGCTATGAAAACAGGATGTACAATCTGAAGGTTGAATGTGGGCCAGAATACCCAGAGTCACCACCGTTTGTCAGATTTGTGACAAAGATAAACTTGAATGGCGTGCACACCTCCAACGGTGTGGTTGACATGCATGCAGTGActgcactggccaagtggcagAACTCCTACAGTATCCGGATGGTGCTGCTGGAGCTGCGAAGGCTCATGACCTGCAAGGAGAACATGAAGCTTCCTCAGCCACCCGAGGGCCAGATCTACAGCAACTGAGCCCCTGCTACTTTTGCCTCCATATTTTTCTCCCTTCCCTCCCCCAATTCCCAACTCTTCTGTTTTGCTTTTCATCCCTTTATCCCCATCCTCTCCGCCATCCTCTTCAACCTCTTGCCAACACCTTGCTGTgagcacacacagagcagagtACTTTTACAATTATTACTTATTACAGATACATGCAAacatacgtacacacacacacacacacacacacaatcacaataaCGGACAAATGCAAatctacatacacatatatctTTATACACACACTTATTAGCGTTCATGAGTCATTCCAggccctcccctccctctcccatcACTGGAGCTCTGGGTGGACTCAATGTGACAAGTCCTCAGTCCACACCAGATACGATCATTCGAATACTGTACTGTtactaatctttttttttttattatttgtttaaaaaaaaaaaaatgcagattgTACAATAACATAAATAATCTTATTGAGTGTACCTCCTCTGTGTGTTGCctttttgtaacattaaaaaACGGCCACTTAACATTAACGCACATAGTTCACTAAACATACTGTTAGTTATTAGATAATCTTCAAGGTGTACAAATAAAGAAAACCCAAATGCATTCAACTTGGCAAATAATGTGAAGTATGTATTGTCATGTGGCCAGATGTCTAATGAAATATTTTCCTCCGTGTGTGATTGCACAGAATAAATGTTCTCACGCAGTCCTGTTGTAAATGCATGACTGCAGCTCAGCAAGGTGCCTGGAAGTGATCACCTTTTGTCacacatggctttttttttttcttctatgtAAGAATTGTCCAAAGTGAACATTGTGTATCTATACCACTATATCTGATTATAATATGCATAGTAGCATAGTATACAAGTCTACTGTAGGTCTGCAGAAGTCCCAGTTTTAAACCGTGCTTGACAATATAGAAGTGAAATCAGCTACCTCTTTTGGTCCTGTGTAACGTCAGAGGAGTTCATCTGACTTGTGAAACTGTATTTGCTACTCCATGTGAAAATTTGTTTAACTTTCGCCACTTCTTTCATAAAACTTAATTCATGCTTTTCA
>XM_039800850.1
GCTAAATTTGAGGACATGAATAGCGTCAACCAAAGGGGCGTTAAAGTCCCTCGCAATTTCCGGCTCCTGGAAGAGCTGGAGGAAGGCCAGAAAGGTGTGGGAGATGGAACAGTGAGCTGGGGTCTGGAGGACGATGAAGACATGACCTTAACACGGTGGAGAGGGGTGATTCTTGGCCCTCCAAGGACGAGCTATGAAAACAGGATGTACAATCTGAAGGTTGAATGTGGGCCAGAATACCCAGAGTCACCACCGTTTGTCAGATTTGTGACAAAGATAAACTTGAATGGCGTGCACACCTCCAACGGTGTGGTTGACATGCATGCAGTGActgcactggccaagtggcagAACTCCTACAGTATCCGGATGGTGCTGCTGGAGCTGCGAAGGCTCATGACCTGCAAGGAGAACATGAAGCTTCCTCAGCCACCCGAGGGCCAGATCTACAGCAACTGAGCCCCTGCTACTTTTGCCTCCATATTTTTCTCCCTTCCCTCCCCCAATTCCCAACTCTTCTGTTTTGCTTTTCATCCCTTTATCCCCATCCTCTCCGCCATCCTCTTCAACCTCTTGCCAACACCTTGCTGTgagcacacacagagcagagtACTTTTACAATTATTACTTATTACAGATACATGCAAacatacgtacacacacacacacacacacacacaatcacaataaCGGACAAATGCAAatctacatacacatatatctTTATACACACACTTATTAGCGTTCATGAGTCATTCCAggccctcccctccctctcccatcACTGGAGCTCTGGGTGGACTCAATGTGACAAGTCCTCAGTCCACACCAGATACGATCATTCGAATACTGTACTGTtactaatctttttttttttattatttgtttaaaaaaaaaaaaatgcagattgTACAATAACATAAATAATCTTATTGAGTGTACCTCCTCTGTGTGTTGCctttttgtaacattaaaaaACGGCCACTTAACATTAACGCACATAGTTCACTAAACATACTGTTAGTTATTAGATAATCTTCAAGGTGTACAAATAAAGAAAACCCAAATGCATTCAACTTGGCAAATAATGTGAAGTATGTATTGTCATGTGGCCAGATGTCTAATGAAATATTTTCCTCCGTGTGTGATTGCACAGAATAAATGTTCTCACGCAGTCCTGTTGTAAATGCATGACTGCAGCTCAGCAAGGTGCCTGGAAGTGATCACCTTTTGTCacacatggctttttttttttcttctatgtAAGAATTGTCCAAAGTGAACATTGTGTATCTATACCACTATATCTGATTATAATATGCATAGTAGCATAGTATACAAGTCTACTGTAGGTCTGCAGAAGTCCCAGTTTTAAACCGTGCTTGACAATATAGAAGTGAAATCAGCTACCTCTTTTGGTCCTGTGTAACGTCAGAGGAGTTCATCTGACTTGTGAAACTGTATTTGCTACTCCATGTGAAAATTTGTTTAACTTTCGCCACTTCTTTCATAAAACTTAATTCATGCTTTTCA

Function

symbol description
ube2v1 Acts upstream of or within protein K63-linked ubiquitination. Part of UBC13-UEV1A complex. Orthologous to human UBE2V1 (ubiquitin conjugating enzyme E2 V1).

NR:

description
ubiquitin-conjugating enzyme E2 variant 1 isoform X2

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016881 acid-amino acid ligase activity molecular_function

KEGG:

id description
K10704 UBE2V; ubiquitin-conjugating enzyme E2 variant

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039800848.1 True 1621 mRNA 0.43 4 11953175 11957391
XM_039800849.1 False 1615 mRNA 0.43 4 11953175 11957391
XM_039800850.1 False 1533 mRNA 0.42 4 11953175 11956514

Neighbor

gene id symbol gene type direction distance location
slc52a3 slc52a3 coding downstream 7665 11940260 ~ 11945510 (-)
scrt2 scrt2,LOC108249568,LOC102228875,LOC107391295 coding downstream 45562 11898818 ~ 11907613 (-)
tcf15 tcf15,LOC104919924,LOC103354327,LOC100694468,LOC102295168 coding downstream 72555 11878352 ~ 11880620 (-)
LOC120558412 NA coding downstream 81714 11865707 ~ 11871461 (-)
slc13a3 slc13a3 coding downstream 89481 11855050 ~ 11863694 (-)
LOC120559249 ptpn1 coding upstream 29019 11986410 ~ 11999445 (-)
LOC120559362 LOC102786474,LOC103354471 coding upstream 146500 12103891 ~ 12119146 (-)
LOC120558333 NA coding upstream 266913 12224304 ~ 12230288 (-)
dnajc5aa dnajc5,LOC104933326,LOC101169856,LOC107090698 coding upstream 275714 12233105 ~ 12237737 (-)
ythdf1 LOC104938233,LOC103354577,LOC106952594,LOC100697389,LOC102786472 coding upstream 302606 12259997 ~ 12270531 (-)
G48911 NA non-coding downstream 337466 11607970 ~ 11615709 (-)
G48910 ankrd52 non-coding downstream 346561 11605733 ~ 11606614 (-)
G48907 ankrd52 non-coding downstream 352667 11600292 ~ 11600508 (-)
G48886 cs non-coding downstream 374187 11576539 ~ 11578988 (-)
G48903 LOC102783589,LOC107599367 non-coding downstream 380186 11564071 ~ 11572989 (-)
G49024 NA non-coding upstream 45876 12003267 ~ 12063255 (-)
G49084 NA non-coding upstream 162267 12119658 ~ 12121550 (-)
G49092 NA non-coding upstream 183544 12140935 ~ 12141414 (-)
G49112 NA non-coding upstream 189337 12146728 ~ 12147033 (-)
G49118 NA non-coding upstream 254352 12211743 ~ 12213541 (-)
srxn1 srxn1 other downstream 62036 11885965 ~ 11891139 (-)
LOC120558961 NA other downstream 444838 11503827 ~ 11508337 (-)
G48697 NA other downstream 1219288 10641405 ~ 10733887 (-)
G48523 NA other downstream 1927350 10024994 ~ 10025825 (-)
hipk1a LOC103359735 other downstream 2167934 9766311 ~ 9785241 (-)
peds1 LOC104919928,LOC103354371 other upstream 1988 11959379 ~ 11979035 (-)
G49083 LOC103354491,LOC102226477,LOC108232148 other upstream 169495 12126886 ~ 12128425 (-)
dnmt3ba NA other upstream 190023 12147414 ~ 12169209 (-)
ppdpfa LOC104933328,LOC101073585 other upstream 263343 12220734 ~ 12223028 (-)
fkbp1aa LOC100692950,LOC107391264,LOC103354614,LOC101168621 other upstream 431590 12388981 ~ 12391677 (-)

Expression


Co-expression Network