col9a3


Basic Information

Item Value
gene id col9a3
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 15076829 ~ 15094038 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039800885.1
TGAGTTCAGCCCCATTCGGCTGGAGACTCGGGTTTATCTGGAACCTGAGGAGGCCACTCTGTGCGCCGTGTGGTAAAGGAAGGCTGCGTTGCGGACGCTGGGGGGGAGTGAGAGAGGACCTGGAACCGGGGATTTGACCTTTTCTGCAAAAACTCTGGTTTGTGAGGGCGAGCGAAGGAGCCATGGCGGTGTTCTCTGCGCTTTGGGTGCTCTTACTGTGCCAGCTTTTGACATCATCCTCAGCCCAGAGGCCAGGCCCCAGAGGAGCTTCTGGGACACCAGGACCCTTAGGTGCACCGGGAAAGGATGGCACTGATGGCAAACCTGGACCTGCTGGGCTGCCAGGGAAATCTGGTCCTAAAGGGAAACCAGGGATACCAGGGACAGCAGGAAAACCAGGCCTGCCAGGACTTCCAGGAGTGGACGGTTTGACAGGTCCTGATGGTCCTGCTGGGAAAGATGGACCCCCAGGGGAATCAGGTGACCCTGGACCTCCTGGGCCACCTGGACCTCCTGGCAGAGGGAGACCAGGAGCTGCAGGACTACCTGGAACCAATGGGTTGCCAGGCGGAGTCGGACCCCAGGGTCCAGCGGGTTTGGAGGGTCTTCCAGGACTTCCTGGACCTTCTGGCCCTGATGGACCACCAGGACTTCCCGGTACTCTTCATGATCTTAGCGGTGACCTTCTGTGTCCCGCCATCTGCCCCCCTGGTCCCTCTGGTGCTTCTGGGATGCCAGGATTCAAGGGTCACACAGGCCATAAAGGAGACAAGGGAGAGCTTGGCAAAAATGGAGAGAAGGGTGACAGTGGTCTACCTGGCCCACCAGGTATTCCTGGGACTGTGGGTCTGCAGGGCCCGCGTGGTCTCAGAGGTTTACAAGGCCCAATGGGAGCTGTAGGAGACAGAGGCCTGCCTGGTTTCAGAGGCAAACCTGGCATCGCCGGCATCATTGGAAAGACAGGTGACGCCGGAGAAAAGGGACCACAGGGTTTCAGAGGACCCAAAGGAGAAATTGGTAAAATTGGTCCCAAAGGAGGTCCTGGAGGAGCCGGACCCAAAGGGGAGCCTGGTATTCCTGGCAGAGATGGCAAAGATGGTACACCAGGGTTAGATGGCGAGAAGGGTGATGCTGGACGCCATGGGGTAGTTGGAGAGAAAGGACCAAATGGACTCCCTGGTCTACAAGGAAAGGCTGGTGCAAAGGGGTCCAAAGGAGGAGTTGGTGATCCCGGGAAGGCTGGGGAGACAGGACCTTCTGGAGAGCCAGGTATTCCTGGTGACATCGGCATCCCAGGAGAGAGGGGGATAGCAGGACCCAGAGGAGTGGCAGGAGGTATTGGACCAGTGGGCAACCCTGGGCCTCAGGGAGTGAAAGGCTTCCAGggGGTAAACGGAGCCTTGGGGGATCCAGGTCTTCCAGGTCCAACAGGAATCCGTGGAGAGTTTGGTGAAAGGGGTCCAGTTGGAGCATCTGGAGCTAAAGGAGACATGGGTGTGGCAGGAAGTGATGGTTTACCAGGAGAGAATGGCGAACCTGGTCCTTTTGGCCCAGTTGGACAAAAAGGAGAGGCTGGAAAGCGGGGTGAACTGGGACCTAAGGGTGTGACAGGCCCACAAGGAGAGCTTGGGGCTAGAGGGCCTCCAGGAAAACAAGGAATTATGGGCTTCCAAGGGGAGCAGGGTCTGCCTGGAATTGCAGGAAAGACCGGTGTACCCGGTAAACTGGCGAGTGAGCAGCACATCAGAGAGCTGTGTGGCTCAATGATCGATGACCAGATTGCACAGCTGGCGGCTAACCTTCGAAGACCCCTGGCCCCTGGAATGGTGGGCCGCCCCGGCCCTGCAGGGCTTCCAGGAAAGCCTGGAGTTGTTGGCTCTATTGGGCATCCAGGTTCCCGTGGACCACCAGGGTACAGAGGCCTGCCAGGAGAACTCGGAGACCCAGGTCCCAGAGGTGATGTTGGTGAGCAAGGTGATAAGGGATCTATTGGCAAAGCCATCGACGGGCCCACTGGAGACCAAGGATACCAAGGTCTTCCAGGGGTACCTGGAATTGTTAAAGATGGCCGTGATGGATCTCCAGGAGATCCAGGTGAGCCTGGAGAGCCAGGCAGGGTAGGTAGGACTGGGCACCAGGGAACTCCTGGAATCTGTGATACATCAGCCTGCCAGGGAGCATCGGTCGCTGGAAAATCCTCCAACCCCAAAAACCATTAAACATGACTTCCTGTAACCTGATGCCATCCACCCCAATGTGGAAGGGTGATAAGtgagggaaggaaggaatgaaagaagaaagtgatcacaaaaaaaatgtcctctTTATTTAAATACATGTATCACAAGATGGCAAGAGTAACATCAAACAGATGTGATATTTTGAGAGGAATAGAGGAACATCCCAGGAGTGACATGAATACCAGAGCAactgaaagacaaaaacatcaagatGACGTTCAGAAATAAAGTGGACAGAGGCACGGAAGAGTCCAAGAGAACAACTGCATTGCTCCAAATACTACAGTATAACTAGACTTGACTTGCAAACAACTGGAAAATGATTGATGAGTCCTTTTGTGTATAAAACTTTGTACATGTTGTTTCCATGCCACCGTTACCTTGGTTAACATCCTTCTGACAGATGACACTAAAAACAACAGTGATTGACTGAAGTGAATGTGCATGTATCATGGCCCATCAACAGGTGTCACAGGTGTTACCTCAACATACAAGCTTACAGTGTAAAATATGGAAATAGGTGACAGAGTTAAAAAGCCTCTGTCAAGGAGCTGTGTATGTATtataaaaggaataaaaaacacaaatacccAGGTGCCTTAAAATGTGTAgattaatgcattttttttttttttttttttttttttacagcatctttgttttttttttaattgcatgtAAAGTTGATTCTCTGTATTtgagaatcaaaaacaaaatgaaacttGTGGATGCATAAATCAGACATTGTAAAATAAATTTCTAAATCTTAGAAGCaaagtaatttttttcttcttttgttttttaaaaatctaCAATGACCACATCCACTATGTACTACCAGTGCTTAAATACTATTTATTATTTGTGGGTGACTGTTGTATGTACAGTAAGATGCTACAGCGACATGTTGTAAGAAAGAACAAATAAAGCCACTTTTCAGTAAAA
>XM_039800887.1
GGCAAACCTGGACCTGCTGGGCTGCCAGGGAAATCTGGTCCTAAAGGGAAACCAGGGATACCAGGGACAGCAGGAAAACCAGGCCTGCCAGGACTTCCAGGAGTGGACGGTTTGACAGGTCCTGATGGTCCTGCTGGGAAAGATGGACCCCCAGGGGAATCAGGTGACCCTGGACCTCCTGGGCCACCTGGACCTCCTAGGGAGACCAGGAGCTGCAGGACTACCTGGAACCAATGGGTTGCCAGGCGGAGTCGGACCCCAGGGTCCAGCGGGTTTGGAGGGTCTTCCAGGACTTCCTGGACCTTCTGGCCCTGATGGACCACCAGGACTTCCCGGTACTCTTCATGATCTTAGCGGTGACCTTCTGTGTCCCGCCATCTGCCCCCCTGGTCCCTCTGGTGCTTCTGGGATGCCAGGATTCAAGGGTCACACAGGCCATAAAGGAGACAAGGGAGAGCTTGGCAAAAATGGAGAGAAGGGTGACAGTGGTCTACCTGGCCCACCAGGTATTCCTGGGACTGTGGGTCTGCAGGGCCCGCGTGGTCTCAGAGGTTTACAAGGCCCAATGGGAGCTGTAGGAGACAGAGGCCTGCCTGGTTTCAGAGGCAAACCTGGCATCGCCGGCATCATTGGAAAGACAGGTGACGCCGGAGAAAAGGGACCACAGGGTTTCAGAGGACCCAAAGGAGAAATTGGTAAAATTGGTCCCAAAGGAGGTCCTGGAGGAGCCGGACCCAAAGGGGAGCCTGGTATTCCTGGCAGAGATGGCAAAGATGGTACACCAGGGTTAGATGGCGAGAAGGGTGATGCTGGACGCCATGGGGTAGTTGGAGAGAAAGGACCAAATGGACTCCCTGGTCTACAAGGAAAGGCTGGTGCAAAGGGGTCCAAAGGAGGAGTTGGTGATCCCGGGAAGGCTGGGGAGACAGGACCTTCTGGAGAGCCAGGTATTCCTGGTGACATCGGCATCCCAGGAGAGAGGGGGATAGCAGGACCCAGAGGAGTGGCAGGAGGTATTGGACCAGTGGGCAACCCTGGGCCTCAGGGAGTGAAAGGCTTCCAGggGGTAAACGGAGCCTTGGGGGATCCAGGTCTTCCAGGTCCAACAGGAATCCGTGGAGAGTTTGGTGAAAGGGGTCCAGTTGGAGCATCTGGAGCTAAAGGAGACATGGGTGTGGCAGGAAGTGATGGTTTACCAGGAGAGAATGGCGAACCTGGTCCTTTTGGCCCAGTTGGACAAAAAGGAGAGGCTGGAAAGCGGGGTGAACTGGGACCTAAGGGTGTGACAGGCCCACAAGGAGAGCTTGGGGCTAGAGGGCCTCCAGGAAAACAAGGAATTATGGGCTTCCAAGGGGAGCAGGGTCTGCCTGGAATTGCAGGAAAGACCGGTGTACCCGGTAAACTGGCGAGTGAGCAGCACATCAGAGAGCTGTGTGGCTCAATGATCGATGACCAGATTGCACAGCTGGCGGCTAACCTTCGAAGACCCCTGGCCCCTGGAATGGTGGGCCGCCCCGGCCCTGCAGGGCTTCCAGGAAAGCCTGGAGTTGTTGGCTCTATTGGGCATCCAGGTTCCCGTGGACCACCAGGGTACAGAGGCCTGCCAGGAGAACTCGGAGACCCAGGTCCCAGAGGTGATGTTGGTGAGCAAGGTGATAAGGGATCTATTGGCAAAGCCATCGACGGGCCCACTGGAGACCAAGGATACCAAGGTCTTCCAGGGGTACCTGGAATTGTTAAAGATGGCCGTGATGGATCTCCAGGAGATCCAGGTGAGCCTGGAGAGCCAGGCAGGGTAGGTAGGACTGGGCACCAGGGAACTCCTGGAATCTGTGATACATCAGCCTGCCAGGGAGCATCGGTCGCTGGAAAATCCTCCAACCCCAAAAACCATTAAACATGACTTCCTGTAACCTGATGCCATCCACCCCAATGTGGAAGGGTGATAAGtgagggaaggaaggaatgaaagaagaaagtgatcacaaaaaaaatgtcctctTTATTTAAATACATGTATCACAAGATGGCAAGAGTAACATCAAACAGATGTGATATTTTGAGAGGAATAGAGGAACATCCCAGGAGTGACATGAATACCAGAGCAactgaaagacaaaaacatcaagatGACGTTCAGAAATAAAGTGGACAGAGGCACGGAAGAGTCCAAGAGAACAACTGCATTGCTCCAAATACTACAGTATAACTAGACTTGACTTGCAAACAACTGGAAAATGATTGATGAGTCCTTTTGTGTATAAAACTTTGTACATGTTGTTTCCATGCCACCGTTACCTTGGTTAACATCCTTCTGACAGATGACACTAAAAACAACAGTGATTGACTGAAGTGAATGTGCATGTATCATGGCCCATCAACAGGTGTCACAGGTGTTACCTCAACATACAAGCTTACAGTGTAAAATATGGAAATAGGTGACAGAGTTAAAAAGCCTCTGTCAAGGAGCTGTGTATGTATtataaaaggaataaaaaacacaaatacccAGGTGCCTTAAAATGTGTAgattaatgcattttttttttttttttttttttttttacagcatctttgttttttttttaattgcatgtAAAGTTGATTCTCTGTATTtgagaatcaaaaacaaaatgaaacttGTGGATGCATAAATCAGACATTGTAAAATAAATTTCTAAATCTTAGAAGCaaagtaatttttttcttcttttgttttttaaaaatctaCAATGACCACATCCACTATGTACTACCAGTGCTTAAATACTATTTATTATTTGTGGGTGACTGTTGTATGTACAGTAAGATGCTACAGCGACATGTTGTAAGAAAGAACAAATAAAGCCACTTTTCAGTAAAA

Function

NR:

description
collagen alpha-3(IX) chain-like

GO: NA

KEGG:

id description
K08131 COL9A; collagen type IX alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039800885.1 True 3185 mRNA 0.51 32 15076829 15094038
XM_039800887.1 False 2863 mRNA 0.50 30 15076829 15091424

Neighbor

gene id symbol gene type direction distance location
zgc:113278 LOC104951675,LOC103357347,LOC102293950,LOC100706617,LOC102213464 coding downstream 65834 15001961 ~ 15010995 (-)
LOC120559456 ncoa3,LOC104951720,LOC104919659,LOC100705914,LOC103373047,LOC102789026 coding downstream 84939 14926288 ~ 14991890 (-)
LOC120559597 LOC103373045,LOC100705386,LOC101481619,LOC102789314 coding downstream 156057 14905051 ~ 14920772 (-)
LOC120559665 rnd1,LOC104919641,LOC101482985,LOC103358630 coding downstream 242898 14823706 ~ 14833931 (-)
ddx23 ddx23 coding downstream 262622 14805105 ~ 14814207 (-)
ogfr NA coding upstream 1151 15095189 ~ 15101900 (-)
LOC120558694 taf4 coding upstream 573140 15667178 ~ 15681715 (-)
LOC120559538 NA coding upstream 621581 15715619 ~ 15724180 (-)
cdh26.1 NA coding upstream 633162 15727200 ~ 15738542 (-)
LOC120559871 LOC104919620,LOC103370834 coding upstream 647178 15741216 ~ 15757208 (-)
G49977 tcfl5 non-coding downstream 3405 15071837 ~ 15073424 (-)
G49882 mip,LOC106516764,LOC103373044,LOC108231939 non-coding downstream 173970 14902089 ~ 14902859 (-)
G49878 NA non-coding downstream 187315 14888775 ~ 14889514 (-)
G49876 baz2a,LOC102790184 non-coding downstream 191443 14884146 ~ 14885386 (-)
G49862 ptges3,LOC102790477 non-coding downstream 211082 14862795 ~ 14865747 (-)
LOC120559280 NA non-coding upstream 38614 15132652 ~ 15137753 (-)
LOC120559278 NA non-coding upstream 119932 15213970 ~ 15214624 (-)
G49991 NA non-coding upstream 124023 15218061 ~ 15218563 (-)
G50004 NA non-coding upstream 208360 15302398 ~ 15302637 (-)
G50005 NA non-coding upstream 225368 15319406 ~ 15319845 (-)
G49845 naca,LOC107737655,LOC106571941 other downstream 223012 14845338 ~ 14853817 (-)
map3k12 LOC104930685,LOC103358642 other downstream 525271 14539788 ~ 14551558 (-)
G49766 LOC103358643,LOC101487433,LOC103144045,LOC101072611,LOC101159823,LOC107094832 other downstream 542224 14532124 ~ 14534605 (-)
LOC120558545 LOC104942567,LOC103358644 other downstream 643835 14416336 ~ 14432994 (-)
LOC120558710 NA other downstream 931607 14140380 ~ 14145222 (-)
G50217 fgd3,LOC104966710 other upstream 1187006 16281044 ~ 16283856 (-)
LOC120559328 smim4 other upstream 2012796 17106834 ~ 17115047 (-)
G50712 birc7 other upstream 2594077 17688115 ~ 17689760 (-)
zbtb46 zbtb46,LOC102795869 other upstream 2741042 17835080 ~ 17895082 (-)
samd10b samd10,LOC107570869 other upstream 2880255 17974293 ~ 18101572 (-)

Expression


Co-expression Network