LOC120559301 (LOC103366116)


Basic Information

Item Value
gene id LOC120559301
gene name LOC103366116
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 11818150 ~ 11825217 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039800928.1
ACTCTCAGCTGGCTCGGCCTTGGACTTGGCAGCAGCCGCCTATACTGTCGCTGGGAGCAGATGGTCTCCCTCTCAGAGCCAGGCGTCAGCTGTTCACATGAGCACAGGTCGGCCGCCTGCAGTTCACAGAGGGAACAACACAGACTCCTGACAGCTCGCTCCCTGACGGACTTACTGGAACATGACAAACTACCACTGAAGATACTTTTTGTTTCTCTGTTGAAGCTCACATTTACTCTGTGAAGAGAGATGCCTAATCCCAGGTGCACAACAGGAAACAGCTTAGTACAAGTTTTTCGTTCCCAAGCTTCCTCTTTTCCTGAACGCCACATGCAGGACATTCCGGTTTCCCACCTTCAATGAACAAAGACCAACCACACATTAATAGAAGTAATAATAATCCTCCAAGATGGCAGTCACGTCACTCTTTTACTCTGTTACTGAGGAGCCTAGCGCTGGCTTAGCTGAGGTGGACATTTGTACGCTTGAGATTAATATCAAGTATGAAGTCATCCCATCTATCGTCTGCTCTGTTTGCATTTCATTCGGCCTCATCTACACGTTTTTCGGATACCGCTGCTTCAAGATGGTCATGTTCTTCTCTGGCTTCATGTTTGGCTCAGCAGCCGTTCTCCTGGTGTACCACAAGGAGCCCCTGTTGGACGCCCAGTTGGGCTCAGAGACAAAGGCAGGGATCGGCCTGGGCGTGGGTGTGCTCTGCGGGCTGATGACCATGCTGGTGTCCACCATGGGACTCCTCCTCAGCAGCCTGCAGCTGGGGAGCCTGATCTCCCTCGCCATCCTGGTGGTCATCGGACAGTTTCACAGCATGACTCCAGTGTGGCTGCCTCTCATCGTCGTCCTGGCTGCCAGCATCGCCACTGCTCTCTTCACACTCCAGTGGCAGAAGCTGTTCACCGTCATCTACACATCTGTGTTTGGAGCCACCACTGTGATGCTGTGTGTGGATTACCTGGTGGGGAAGTTTATGCTGCCAGATCAGGTGTATGATTTGTTCTGTCAAGTCGCCCCACGTCCACTCTGCTGGTTTAACTGGGGGATCACTGGGATAGTGCCTGTTATGGGTCTGATAGGTGTGTTGGTGCAATGGAGGTTTACCGCCAAAGGAGTATCACACACAGAAGctgcacacaaaaaacagaagaaacatTCCAAGAAGCACAGATATAGAGAGTCAAGGAGAAGACCTCAACCACACCGTCGGCGCAGGCCTCCACCGCTGAAACGCTACGCTGGGGACGTCCTGGCGCCGAGTTATCTCCAGAGCCTTAAGGAGCGCCAGATGGGAACGGGCTCCTCCACCAGCAGCGTCAGCACCATCACACATACTCTgattgactttgactttgagaCGGGCTCCATGGTGCCTCTGACTGCTGCCTCCCCTGTTTTTACAGTCTGAAGGAACCCGCCATCAAATATCTGCAACCTGCACATATCCGATCCATTACCATGTACTTATAATTAAACTGTACCTTGaatgtt

Function

NR:

description
PREDICTED: transmembrane protein 198-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039800928.1 True 1506 mRNA 0.52 5 11818150 11825217

Neighbor

gene id symbol gene type direction distance location
spats2 spats2,LOC102777081 coding downstream 11706 11784803 ~ 11806444 (-)
ormdl2 ormdl2,LOC101074775,LOC101464341 coding downstream 67541 11746307 ~ 11750609 (-)
cd63 NA coding downstream 87069 11716619 ~ 11731081 (-)
zgc:56699 NA coding downstream 118198 11696956 ~ 11699952 (-)
si:dkey-190g6.2 coq10a,LOC106917050,LOC103139137,LOC102221461 coding downstream 232180 11580293 ~ 11585970 (-)
LOC120558426 LOC102786184,LOC101465378,LOC100693664 coding upstream 10446 11835663 ~ 11841573 (-)
LOC120559814 NA coding upstream 19494 11844711 ~ 11848087 (-)
slc13a3 slc13a3 coding upstream 29833 11855050 ~ 11863694 (-)
LOC120558412 NA coding upstream 40490 11865707 ~ 11871461 (-)
tcf15 tcf15,LOC104919924,LOC103354327,LOC100694468,LOC102295168 coding upstream 53135 11878352 ~ 11880620 (-)
G48911 NA non-coding downstream 202441 11607970 ~ 11615709 (-)
G48910 ankrd52 non-coding downstream 211536 11605733 ~ 11606614 (-)
G48907 ankrd52 non-coding downstream 217642 11600292 ~ 11600508 (-)
G48886 cs non-coding downstream 239162 11576539 ~ 11578988 (-)
G48903 LOC102783589,LOC107599367 non-coding downstream 245161 11564071 ~ 11572989 (-)
G49024 NA non-coding upstream 178050 12003267 ~ 12063255 (-)
G49084 NA non-coding upstream 294441 12119658 ~ 12121550 (-)
G49092 NA non-coding upstream 315718 12140935 ~ 12141414 (-)
G49112 NA non-coding upstream 321511 12146728 ~ 12147033 (-)
G49118 NA non-coding upstream 386526 12211743 ~ 12213541 (-)
LOC120558961 NA other downstream 309813 11503827 ~ 11508337 (-)
G48697 NA other downstream 1084263 10641405 ~ 10733887 (-)
G48523 NA other downstream 1792325 10024994 ~ 10025825 (-)
hipk1a LOC103359735 other downstream 2032909 9766311 ~ 9785241 (-)
c1qtnf12 fam132a other downstream 2064464 9727874 ~ 9753686 (-)
srxn1 srxn1 other upstream 60748 11885965 ~ 11891139 (-)
peds1 LOC104919928,LOC103354371 other upstream 134162 11959379 ~ 11979035 (-)
G49083 LOC103354491,LOC102226477,LOC108232148 other upstream 301669 12126886 ~ 12128425 (-)
dnmt3ba NA other upstream 322197 12147414 ~ 12169209 (-)
ppdpfa LOC104933328,LOC101073585 other upstream 395517 12220734 ~ 12223028 (-)

Expression


Co-expression Network