taf11 (taf11)


Basic Information

Item Value
gene id taf11
gene name taf11
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 14228370 ~ 14230406 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039800933.1
AAAAACGGAAACGGAACCCCGGTGCTAATGCTATCAATAAGCCGAGAAAACTAGCATTCTGATGCCATCATTTCTCTTAGACTAAGGAGttgcaatgtaatgtaattaattGTAAGGGCAATCTCTGCGTTATGTGTTAGCTTCATTGCCAACTAGGGCCACTTACTAAACTAACCTTCCACATCCATgaaactaacgttagcctacctccGCCGTTAGCTTGGCTATTGCTGCTGTTTTGTTGACGCCTAGCTGCAGAGAAGAATCTGAAGCTGTCAGCCACTGTTGGAGGGACTGAGTAATTATGGCTGACCCTGCACGGATCAAACCTGAAGCTAAACCCGAGAGAACAGCTTCTGCTAACGAGGAGCATCCTAAATCAGGGGGAACTGAAGATGTGCCTGCTACAGCAAAACCCACAGATGATAACAAAGAGTCGTCCTCGCAAGATGAGTCCAAACAGGAGGTTAAATCTGAAATGGCAGCTGGAGAAGATGAGGACGAAGGAACCTCTGGTGAAACTTCTGCTAAAAGACTAAAGGTGGAACCAGAGAAGAAAAAGGAGAAGCGCCAAAAAGTTGATGAGGATGAAATACAAAAGATGCAagttttggtgtcgTCCTTTTCTGAAGAGCAACTGAATCGCTATGAGATGTACAGACGTGCTGCTTTTCCTAAGGCAGCTATTAAGAGGCTGATCCAGTCCATAACAGGATCGTCAGTGTCCCAGAATGTGGTGATTGCCATGTCTGgtatttccaaagtttttgctGGGGAAATTGTTGAGGAAGCGTTGGACGTTTGTGAGAAGTGGGGAGACACACCACCGCTTCAGCCCAAGCACATGAGAGAAGCAGTGAGGAGGTTAAAGAGCAGAGATCAGATTCCCAACACCAAGTACAAGCAAATACTCTTCAACTGAGGCACCTGTGCTTTAGGTTGTATGGGGAGCATGCCTTAAATGCCAATTAAATAAATGGTGCCATACCCTGTGCAGCTGACTAGACACAATTGTTTTCTACAAACCAGTCAAGATCAGTGACTGTAGTGTTGGAGAATGGTCAATACAGACAAGATCAAGTGGGTCTCTTACATAAAGGCAGCAGTAGAAACTCCACTATGACCTGCCATTCACCTCTAATTTTTAAGGTAAATACTTGATGCAACATACAGTGCAAATGGTGTGAAATTCTGTTATGTATTATGGttgtaaatacagtatgttttaaatTGC

Function

symbol description
taf11 Predicted to enable transcription coactivator activity. Predicted to be involved in RNA polymerase II preinitiation complex assembly. Predicted to act upstream of or within transcription initiation from RNA polymerase II promoter. Predicted to be located in nucleus. Predicted to be part of transcription factor TFIID complex. Orthologous to several human genes including TAF11 (TATA-box binding protein associated factor 11).

NR:

description
transcription initiation factor TFIID subunit 11 isoform X2

GO:

id name namespace
GO:0006367 transcription initiation from RNA polymerase II promoter biological_process
GO:0005634 nucleus cellular_component
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K03135 TAF11; transcription initiation factor TFIID subunit 11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039800933.1 True 1234 mRNA 0.44 6 14228370 14230406

Neighbor

gene id symbol gene type direction distance location
LOC120559681 LOC104936655,LOC104942559,LOC101467974,LOC102795863 coding downstream 24410 14195482 ~ 14203960 (-)
LOC120558709 spdef,LOC103372894 coding downstream 35034 14185309 ~ 14193336 (-)
LOC120558702 LOC103355290,LOC102793276,LOC102312415,LOC101471251,LOC100701884 coding downstream 145565 13850446 ~ 14082805 (-)
LOC120558701 LOC106516757,LOC108231961 coding downstream 449279 13754929 ~ 13779091 (-)
LOC120558999 NA coding downstream 481682 13743189 ~ 13746688 (-)
si:ch73-217n20.1 NA coding upstream 173612 14404018 ~ 14409405 (-)
dlgap4a dlgap4,LOC100704042,LOC103358645,LOC102796366 coding upstream 204839 14435245 ~ 14517114 (-)
col2a1a LOC103358639 coding upstream 335411 14565817 ~ 14590838 (-)
spryd4 spryd4 coding upstream 386205 14616611 ~ 14620139 (-)
LOC120559225 g6pd,LOC104919647,LOC107391210 coding upstream 454639 14685045 ~ 14698017 (-)
G49682 uhrf1bp1 non-coding downstream 7752 14220217 ~ 14220618 (-)
G49681 NA non-coding downstream 8590 14219510 ~ 14219780 (-)
G49680 NA non-coding downstream 9191 14218972 ~ 14219179 (-)
G49679 uhrf1bp1 non-coding downstream 9563 14217647 ~ 14218807 (-)
G49678 NA non-coding downstream 10860 14217020 ~ 14217510 (-)
G49716 NA non-coding upstream 169609 14400015 ~ 14402630 (-)
G49739 NA non-coding upstream 172304 14402710 ~ 14403787 (-)
G49801 NA non-coding upstream 439047 14669453 ~ 14672001 (-)
G49802 NA non-coding upstream 443222 14673628 ~ 14673848 (-)
G49807 NA non-coding upstream 452304 14682710 ~ 14683985 (-)
LOC120558710 NA other downstream 83148 14140380 ~ 14145222 (-)
smim29 LOC104942556,LOC104932788,LOC105416285,LOC106572343,LOC105022745 other downstream 102547 14039735 ~ 14125823 (-)
zgc:66479 NA other downstream 474504 13747403 ~ 13753866 (-)
LOC120558461 NA other downstream 815192 13406785 ~ 13413178 (-)
LOC120558437 NA other downstream 915641 13308360 ~ 13312729 (-)
LOC120558545 LOC104942567,LOC103358644 other upstream 185930 14416336 ~ 14432994 (-)
G49766 LOC103358643,LOC101487433,LOC103144045,LOC101072611,LOC101159823,LOC107094832 other upstream 301718 14532124 ~ 14534605 (-)
map3k12 LOC104930685,LOC103358642 other upstream 309382 14539788 ~ 14551558 (-)
G49845 naca,LOC107737655,LOC106571941 other upstream 614932 14845338 ~ 14853817 (-)
G50217 fgd3,LOC104966710 other upstream 2050638 16281044 ~ 16283856 (-)

Expression


Co-expression Network