kctd6b (kctd6,LOC101466953,LOC104935404,LOC100692855,LOC107097548,LOC103354431)


Basic Information

Item Value
gene id kctd6b
gene name kctd6,LOC101466953,LOC104935404,LOC100692855,LOC107097548,LOC103354431
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 17116150 ~ 17119562 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039800976.1
CCAGCCTGGAGCCAAGCATAGCACAGCTGCCCGGACGACCAGCGGCAAACATCACTGACTGTCTGACTGCACCGTTAAATACCAACCGCGAGTCGCTGTTTCTggacaaaaaagacaaataagCAAGAAAGCGAGCCGGTGAAATTGAATTAAGCCAAAGCGTATCTGTTCCCTCTATAATTTGGTCCTGACCAAGTGGGCATTGTTCTACAAATGGATAATGGAGACTGGGGCCATAGGATGAGTACTCCTGTTACCTTGAACGTAGGAGGCCACCTGTACACCACCAGTGTATCCACCCTGCAGCGCTATCCAGACTCCATGCTGGGTGCCATGTTCCGGGGAGATTTCCCCACAACTCGCGATTCCCAAGGGAATTATTTCATTGATCGCGATGGGACACTGTTCCGGTACATCCTGAACTTCCTGCGGACGTCTGAGCTGACCCTCCCCTTGGACTTCACAGAGACAGACCTCCTTAGGAAAGAGGCGGACTTCTACCAGATCGAACCTTTGATTCAGTGCCTTAACGATCCCAAGCCACTGTACCCTCCCGACATCTTCGAGCAAGTCGTGGAGCTCTCCAGCACTCGGAAACTGTCAAAATATTCAAACCCAGTCGCCGTTATCATCACCCAGCTAACCATAACTACGAAGGTTCACGGCCTGCTGGAAGGTATTTCTAACAACTTCACCAAGTGGAACAAACACATGATGGACACCAGAGACTGCCAGGTGTCATTCACCTTTGGACCTTGTGACTATCACCAAGAGGTGTCCCTAAGGGTTCACCTCATGGACTATATCATGAAACAAGGCTTCACCATCCGCAACACACGTGTGCATCACATGAGTGAGCGTGCAAACGAGAACACAGTGGAGCATCACTGGACTTTCTGTAGACCAGCTCACAAGGTTGAAGACTAAGTTACAGCAGTCATTGTGGGTGACATTACTGTTTGATATGTCTTCATGTTAcacaagataaaaaaagaacacattttGACCTGTTTCAGTAATGTGAAtgattttgttttcttattttgatCAACGTGGTACAGTGGCACAAGACTTAAAGTCCAGACAGATAGCATaaacacaatgaaaatgtgaatTCTTGATTTATTCACCTGTAAGTGCAAGAGCACTTTCTTATCTGTGCTACCACTACATATTTGACATTTCTTGAATAATTAATACTCCATTGGGGTTAAGTcctataaaacaaaaacagcatttcTTATGAAGCAGAAAGATCCTATAGCATTGATTTTTATTATGATTGTATGTATTTAGAGACACAAGTATACCCCAAATGATGCTAACAATGTGGGTAAATTGATTTTAATAGAAATAATTGTAATTTAATGTGGTTCCAATACCTGTATGTTTTTTCCCGAAGTATGTAATAAAGTGATAGTAAAACTGTAGCCATGATTTGAGACTCTATGCCTACATACAGTATCAAATCTATGTCTAAACATGCATTAATGTGCATTTAGatcaaaagagaaaagaaaggtgATTGTAAAAATGTTTGTACCTCAGACGCAAGCTGTCTTGGTCATGTATTGGACTAAATACTAAGAACTGTTTTGGATCCAGAGTTGTCAGGAgtgaacctttttttaaataataaattatggTTATCTTTAGCCCAATTTACAGTAGATCTTAAAATGAATCTCTTAGCTCTCTTATCTCCTTGTATAGTACTATTTCTGAAGGCCCTAGTCATCTTGCATGTGTCTGAGTgtcttgtgtttgtatttgtgtgcttGCAGTATTGTGTCGTACTGTTACAGTTTAGAGCTCATATCAGCAGTAATGTGTTTGGTCAGTCTAGCCAAAATAAACCCATCTGTGTATTtgtca
>XM_039800977.1
CAGCCTGGAGCCAAGCATAGCACAGCTGCCCGGACGACCAGCGGCAAACATCACTGACTGTCTGACTGCACCGTTAAATACCAACCGCGAGTCGCTGTTTCTggacaaaaaagacaaataagCAAGAAAGCGAGCCGATGAGTACTCCTGTTACCTTGAACGTAGGAGGCCACCTGTACACCACCAGTGTATCCACCCTGCAGCGCTATCCAGACTCCATGCTGGGTGCCATGTTCCGGGGAGATTTCCCCACAACTCGCGATTCCCAAGGGAATTATTTCATTGATCGCGATGGGACACTGTTCCGGTACATCCTGAACTTCCTGCGGACGTCTGAGCTGACCCTCCCCTTGGACTTCACAGAGACAGACCTCCTTAGGAAAGAGGCGGACTTCTACCAGATCGAACCTTTGATTCAGTGCCTTAACGATCCCAAGCCACTGTACCCTCCCGACATCTTCGAGCAAGTCGTGGAGCTCTCCAGCACTCGGAAACTGTCAAAATATTCAAACCCAGTCGCCGTTATCATCACCCAGCTAACCATAACTACGAAGGTTCACGGCCTGCTGGAAGGTATTTCTAACAACTTCACCAAGTGGAACAAACACATGATGGACACCAGAGACTGCCAGGTGTCATTCACCTTTGGACCTTGTGACTATCACCAAGAGGTGTCCCTAAGGGTTCACCTCATGGACTATATCATGAAACAAGGCTTCACCATCCGCAACACACGTGTGCATCACATGAGTGAGCGTGCAAACGAGAACACAGTGGAGCATCACTGGACTTTCTGTAGACCAGCTCACAAGGTTGAAGACTAAGTTACAGCAGTCATTGTGGGTGACATTACTGTTTGATATGTCTTCATGTTAcacaagataaaaaaagaacacattttGACCTGTTTCAGTAATGTGAAtgattttgttttcttattttgatCAACGTGGTACAGTGGCACAAGACTTAAAGTCCAGACAGATAGCATaaacacaatgaaaatgtgaatTCTTGATTTATTCACCTGTAAGTGCAAGAGCACTTTCTTATCTGTGCTACCACTACATATTTGACATTTCTTGAATAATTAATACTCCATTGGGGTTAAGTcctataaaacaaaaacagcatttcTTATGAAGCAGAAAGATCCTATAGCATTGATTTTTATTATGATTGTATGTATTTAGAGACACAAGTATACCCCAAATGATGCTAACAATGTGGGTAAATTGATTTTAATAGAAATAATTGTAATTTAATGTGGTTCCAATACCTGTATGTTTTTTCCCGAAGTATGTAATAAAGTGATAGTAAAACTGTAGCCATGATTTGAGACTCTATGCCTACATACAGTATCAAATCTATGTCTAAACATGCATTAATGTGCATTTAGatcaaaagagaaaagaaaggtgATTGTAAAAATGTTTGTACCTCAGACGCAAGCTGTCTTGGTCATGTATTGGACTAAATACTAAGAACTGTTTTGGATCCAGAGTTGTCAGGAgtgaacctttttttaaataataaattatggTTATCTTTAGCCCAATTTACAGTAGATCTTAAAATGAATCTCTTAGCTCTCTTATCTCCTTGTATAGTACTATTTCTGAAGGCCCTAGTCATCTTGCATGTGTCTGAGTgtcttgtgtttgtatttgtgtgcttGCAGTATTGTGTCGTACTGTTACAGTTTAGAGCTCATATCAGCAGTAATGTGTTTGGTCAGTCTAGCCAAAATAAACCCATCTGTGTATTtgtca

Function

symbol description
kctd6 Enables ankyrin binding activity; cullin family protein binding activity; and identical protein binding activity. Involved in negative regulation of smoothened signaling pathway and ubiquitin-dependent protein catabolic process. Predicted to be located in cytosol.

NR:

description
BTB/POZ domain-containing protein KCTD6 isoform X2

GO:

id name namespace
GO:0051260 protein homooligomerization biological_process

KEGG:

id description
K21916 KCTD6; BTB/POZ domain-containing protein KCTD6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039800976.1 True 1875 mRNA 0.42 3 17116150 17119562
XM_039800977.1 False 1772 mRNA 0.42 2 17116150 17119561

Neighbor

gene id symbol gene type direction distance location
LOC120558578 LOC103467546,LOC102230394,LOC106947997,LOC105927130,LOC103145058,LOC101167287,LOC104935375 coding downstream 11189 17098625 ~ 17104961 (-)
pabpc1l LOC104935356,LOC100697848,LOC102784553,LOC102215180,LOC101469158,LOC102298035 coding downstream 17650 17080239 ~ 17098500 (-)
LOC120559002 NA coding downstream 114841 17000401 ~ 17001309 (-)
LOC120559259 LOC104927913,LOC103374533,LOC104956322,LOC106571864 coding downstream 143857 16961498 ~ 16972293 (-)
fmodb fmod coding downstream 156469 16954885 ~ 16959681 (-)
abhd6b abhd6,LOC103354432 coding upstream 104 17119666 ~ 17124287 (-)
slmapb LOC103354436,LOC104935421 coding upstream 10720 17130282 ~ 17141944 (-)
si:ch73-233m11.2 NA coding upstream 33926 17153488 ~ 17157550 (-)
LOC120559621 LOC104935447 coding upstream 39242 17158804 ~ 17162048 (-)
LOC120558336 LOC103354442 coding upstream 89654 17209216 ~ 17240743 (-)
G50484 rbm39,LOC103373755 non-coding downstream 36855 17074875 ~ 17079295 (-)
G50483 rbm39 non-coding downstream 41417 17071122 ~ 17074733 (-)
G50477 NA non-coding downstream 50876 17064997 ~ 17065274 (-)
G50476 NA non-coding downstream 51404 17063818 ~ 17064746 (-)
G50443 NA non-coding downstream 171178 16944771 ~ 16944972 (-)
G50548 NA non-coding upstream 28644 17148206 ~ 17150051 (-)
G50549 NA non-coding upstream 31755 17151317 ~ 17151938 (-)
G50553 NA non-coding upstream 32638 17152200 ~ 17153427 (-)
G50567 slc6a6,LOC106905582,LOC103145023,LOC101165803 non-coding upstream 70515 17190077 ~ 17193635 (-)
G50561 NA non-coding upstream 84185 17203747 ~ 17205629 (-)
LOC120559328 smim4 other downstream 1103 17106834 ~ 17115047 (-)
G50217 fgd3,LOC104966710 other downstream 832294 16281044 ~ 16283856 (-)
G49845 naca,LOC107737655,LOC106571941 other downstream 2262333 14845338 ~ 14853817 (-)
map3k12 LOC104930685,LOC103358642 other downstream 2564592 14539788 ~ 14551558 (-)
G49766 LOC103358643,LOC101487433,LOC103144045,LOC101072611,LOC101159823,LOC107094832 other downstream 2581545 14532124 ~ 14534605 (-)
G50712 birc7 other upstream 568553 17688115 ~ 17689760 (-)
zbtb46 zbtb46,LOC102795869 other upstream 715518 17835080 ~ 17895082 (-)
samd10b samd10,LOC107570869 other upstream 854731 17974293 ~ 18101572 (-)
LOC120558627 LOC103370864,LOC104963599,LOC101472162 other upstream 1755193 18874755 ~ 18886895 (-)
kcnd3 kcnd3,LOC102776651,LOC102303593,LOC100697611,LOC101470631 other upstream 1826406 18945968 ~ 19077781 (-)

Expression


Co-expression Network