tardbpa (tardbp,LOC106534252)


Basic Information

Item Value
gene id tardbpa
gene name tardbp,LOC106534252
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 24008001 ~ 24021872 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039801003.1
CAAAGATAACAAAAGGAAGATGGAAGAAATAGACGCTGCCTCAgctgtaaaagtaaaaaggggCTTTCAGAAGACGTCAGATCTCATTGTCCTCGGGCTGCCATGGAAAACAACAGAACAAGACTTGAAAGATTATTTCACTACCTTTGGGGAGGTCATTATGGTGCAGGTCAAGAGAGACGTAAAGACTGGCAACTCGAAAGGATTTGGGTTTGTCCGGTTCACTGAGTATGAGACACAAACCAAAGTGATTGCTCAGAGACACATGATTGATGGACGATGGTGTGACTGCAAACTTCCCAACTCAAAGGCGTTTCCTGATGAGCCCATGCGGAGCCGTAAAATCTTTGTTGGCCGCTGTACAGAGGACATGACAACCGACGAACTGAGGCAGTACTTCATGCAGTATGGCGAAGTCACTGATGTCTTCATCCCCAAACCGTTCCGGGCATTTGCATTTGTCACATTTGCTGATGACCAGGTTGCCCAAGCCCTGTGTGGAGAGGACTTGATCATCAAGGGCATCAGCGTGCACATCTCCAATGCTGAGCCCAAACACAATAATAGTAGGCAAATGATGGATCGAGGGCGGTTTGGGGCTGGTGGGTTCAGTCAGGGCTATGGCAGTAATCGTGGTGGGCTAGGCAGTGGTAGTGGGGGGGTTAACTTTGGGGCTCTCGGCCTTAACCCGGCCATGGTGGCTGCTGCccaggcagcgctgcagagCAGTTGGGGAATGATGGGCATGCTGGCAAACCAGCAGGGTATGACCACAACGGCAGGCACTCCCACTACGACCCGAGACCCGACCTATAGCTCCTCCAGCACCACCAGTTACAGCAGCCCCAGTTCAGCTAGCCTCGGTTGGGCTGCAGGCACTAACGCCGCCTCCAGCAGTGGCTTCACCTCCGGCTTTGGCACCTCTATGGAGTCTAAGCCTTCTAGTTGGGGAGTGTAGATAGTTTtgagttcagcttttctgtTGCTATTAGGCTAATCTGGTAAGTATACCTACAGCTGGGAACTGCTTATATCTTATGTTcctattattaaaaatatactgcctttttattttgttaaagagAAAAATTTATACTTGCGTGTGACTGATTATGTAGTCATGCATTGAATGGGTGAAAAGTTTAGTTAGTGAAAACTGCTACGCTcaatttttttggtttttgaaaaaatattaaacaGAGATGAGCATGCAAGATAAATATTTATAAACATGCACGAGTATCTCGAGAGCCCCCTCATCCCCTTGTAAAATGGGCTTGATATGATTATATGTCTGTAAGCAGTTGATTgcatctttttgtttgtttttgtttgacgTCTTTTGGAAACGCCTTCATGAAAGTCTCTTCTGCAGTTCACCAACTCTTTCCCAATTTCCCGGGAGGAAGCGCCTCATTGGCAGCAATGTTCGACAGATCTCAGTATCAATTCCCCTCTTCCCATGTGTAAATGCTTTGCCATCAAAGAACACAGCTTCACTCTGCATATACTGTGTTAGACGGTGggtgttgtctttttttcctctcccctTTTTTATGGATATAGAAATCTTGTCTGCTCTTGTTGCTTTTCAAGATCAATGAGTGGGATTGGTGTTGGACCGAGTGAGAGTGAGCGAACGGGAGAGCAAAATGAAAGAAGTGTGAGATGGACTGTttgtgcagattttttttttttttttttttttttttttaaagagacatGCCTGCGAGAGTTGAGAAGAACCTGTGGCTTTGTGCGAGTGTGAGAGGAAGAAGCAAGTACGAGTGTGTCCCTAATGACCATCACAAGGACATTCTCTGCTTTTTCTCATTGTTTCTATCTTTTAATTCTTTAAACACACAGTGAAATGTCAAGTGCTATGAATATTTGTACCTTTTTCGTAGCTTTCTCTTGCTGTCTGATTTGATGTGAATGCTTTGTCTGGTTgtgtgatttaatttttttctccttGTTAGCACCCTCTCTGTGTGAAAATGTGACTTTGTGCTGGTGGAGTCTGTGTGGGCAAAAACACTGAAAGTGTGTTGAAGTTTGAGGTTGATGTGGTGAATGTTTGACAAGATCCCATTGAAAGTTTGTGTTTGAAGTGGTTACGAATGCATTTTCTATGTTTTGTGACTCAAAGGGAAGTctgaaataaaactgaatttgactAGGTATAATA

Function

symbol description
tardbp Enables double-stranded DNA binding activity; identical protein binding activity; and mRNA 3'-UTR binding activity. Involved in several processes, including negative regulation by host of viral transcription; nuclear inner membrane organization; and regulation of mRNA stability. Located in nucleoplasm. Implicated in Parkinson's disease; amyotrophic lateral sclerosis; amyotrophic lateral sclerosis type 10; and motor neuron disease. Biomarker of Lewy body dementia; neurodegenerative disease (multiple); and progressive supranuclear palsy.

NR:

description
PREDICTED: TAR DNA-binding protein 43 isoform X1

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039801003.1 True 2188 mRNA 0.44 5 24008001 24021872

Neighbor

gene id symbol gene type direction distance location
lzic lzic coding downstream 113817 23891799 ~ 23894184 (-)
her9 hes4,LOC102778090 coding downstream 305572 23700576 ~ 23702429 (-)
perm1 LOC103364029 coding downstream 367603 23629441 ~ 23640398 (-)
noc2l noc2l coding downstream 419749 23558897 ~ 23588252 (-)
ca6 ca6,LOC102780476 coding downstream 708311 23293203 ~ 23299690 (-)
pex14 pex14 coding upstream 244302 24266174 ~ 24319003 (-)
cort cort,LOC101173302,LOC102226263,LOC100698045,LOC103363980 coding upstream 334916 24356788 ~ 24358011 (-)
srm srm coding upstream 339080 24360952 ~ 24365511 (-)
exosc10 exosc10,LOC102796841 coding upstream 348546 24370418 ~ 24384608 (-)
cntn3a.2 LOC103363983,LOC100703160,LOC104954126,LOC102301181,LOC102197109 coding upstream 368325 24390197 ~ 24427068 (-)
G52681 NA non-coding downstream 5978 23980748 ~ 24002023 (-)
G52679 pgd,LOC102797219 non-coding downstream 6369 23995628 ~ 24001632 (-)
G52680 NA non-coding downstream 10282 23996604 ~ 23997719 (-)
G52677 kif1b non-coding downstream 32481 23974843 ~ 23975520 (-)
G52664 NA non-coding downstream 84332 23923208 ~ 23923669 (-)
G52706 NA non-coding upstream 86612 24108484 ~ 24108714 (-)
G52732 NA non-coding upstream 303148 24325020 ~ 24326976 (-)
G52746 NA non-coding upstream 345277 24367149 ~ 24367469 (-)
G52765 NA non-coding upstream 364031 24385903 ~ 24386621 (-)
G52776 chl1,LOC101079354 non-coding upstream 444162 24466034 ~ 24468019 (-)
G52501 eno1,LOC104965722,LOC103151087 other downstream 688317 23308500 ~ 23319684 (-)
si:ch211-150o23.3 LOC103367744,LOC101075068 other downstream 789101 23214098 ~ 23218900 (-)
G52226 NA other downstream 1477293 22529606 ~ 22530708 (-)
LOC120559880 LOC104932903,LOC103358260,LOC104967532,LOC107390844 other downstream 1778580 22223149 ~ 22229421 (-)
si:dkey-151g10.3 wnk3 other downstream 1992958 21970052 ~ 22015043 (-)
masp2 masp2,LOC106536928,LOC103357864,LOC107086886 other upstream 313277 24335149 ~ 24339456 (-)
phactr3a LOC100701276,LOC107550338,LOC107551495,LOC104947949,LOC103365918,LOC106955159 other upstream 728559 24750431 ~ 24785005 (-)
acot7 acot7,LOC102782704 other upstream 1888883 25910755 ~ 25972322 (-)
emc1 NA other upstream 2115126 26136998 ~ 26147245 (-)
G53196 NA other upstream 2191121 26212993 ~ 26214882 (-)

Expression


Co-expression Network