LOC120559362 (LOC102786474,LOC103354471)


Basic Information

Item Value
gene id LOC120559362
gene name LOC102786474,LOC103354471
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 12103891 ~ 12119146 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039801026.1
CGGTTGGACCAATCACAGTGAAACACCGGCGCCAGCTAGCCAATCACGAGCATCTTCAGCGCGTTTGCCTGTCCTCTGGCTGAGCGGTATTTCAGTGAGTACATCAGCCTGTCCTCTTCATCATGGCTTCTGGAGCTTTGTTCCCCAGCATGGTGTCTGGGTCCCGCGGCTCCTCCAGCAAGTACCTGGTGGAGTTTCGGGCCGGTAAGATGACCATGAAGGGCAGCACGGTGACCCCTGACAAGCGCAAAGGCCAGGTTTACATACAGCAGACCGACGACTCGCTCATCCACCTCTGCTGGAAGGATCGGACCACCGGGAACGTGGATGATGACCTGATCATCTTCCCTGATGACTGTGAGTTCAAACGGGTGAACCAGTGCACCACCGGACGAGTCTATGTGCTGAAGTTCAAAGCTGGCTCCAAAAGACTCTTCTTCTGGATGCAGGAGCCAAAGAGTGACAAGGATGAGGAGCACTGCCGTAAAGTGAACGAATATCTCAACAACCCTCCCATGCCCGGTGCTCTGGGTAGTGGCGGCAGCGGAGGTCACGATCTGTCTGCTCTGGGGGGAGAGGGTGGTCTGCAGAGCCTTCTGGGTAACATGAGCCACAACCAGCTCATGCAGCTCATTGGACCAACTGGACTGGGGGGGATCGGTGGTCTCGGGGCACTTGCTGGCCCAGGATTGGCCAACCTCCtgggaagcagcagcagcagcagcagcagtgttccTGCAGCCAGTAATTCCTCCACAagtCCGTCCACAGCTGTCacccccacctccacctctgctgCCAGTCGTCTCGGCTCCACCCAGGTGCCCACCACCCCCATCACTCCCTCCGCCACCACAGTGGCCTCGCCCACAGCCACCACCCCCTCCACCCCTGCTGTGTCCTCTGTAGCAGCGGGGGCAGCCAACCCCACACAGCCCATCCAGCTGAGAGACCTGCAGAGCATCCTGGCCACCATGAATGTGCCCGGCAGCGGACAGGGAGTGGACCTCGCCAGCGTCCTGACACCTGAGATCATGGCTCCCATCCTTGTCAACCCTGAGGTGCAGCAGAGGTTGATGCCTTATCTGCCGTCTGGAGAGTCCCTGCCTCAGAGCACAGAGGAGCTCAACAACACGCTCAGCTCGCCTCAGTTTCAGCAGGCAATGAGCATGTTCAGCAGTGCCCTGGCGTCCGGGCAGTTAGGGCCTCTGATGAACCAGTTTGGTTTGCCTGCGGAAGCTGTGGATGCAGCTAACAAAGGAGATGTTGAGGCTTTTGCCAAAGCCATGGAGACTGAGACAAAGTCGGACGAGGATGGAGACTCCAAAGACAAGAAAGACGACGATGAAGACATGAGTCTGGACTAAGAACTCTTAAAGTTTATTatttaagttatttatttaGCTGCTTTGTAACTGTTAAACATTAAGGTTAAAGATTATGGTTAATATAGTAGAAACTGTCACTAAGACTCCTCTCCCTCGCTGATTGTGCCATGTTCATCCTCCAACAGTGTGTTGAATTAAAATAAACTGAACATGTATTTTACCTGCATGAGAGCTAGTCTGAGCTGTCCGAACACAATGGAACATTAAAACGATGAGAAACACGCTCTA

Function

NR:

description
PREDICTED: proteasomal ubiquitin receptor ADRM1-like

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K06691 RPN13; 26S proteasome regulatory subunit N13

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039801026.1 True 1616 mRNA 0.55 10 12103891 12119146

Neighbor

gene id symbol gene type direction distance location
LOC120559249 ptpn1 coding downstream 104446 11986410 ~ 11999445 (-)
LOC120559253 ube2v1,LOC102081483,LOC108249566,LOC101171992,LOC106536681,LOC107391298 coding downstream 146500 11953175 ~ 11957391 (-)
slc52a3 slc52a3 coding downstream 158381 11940260 ~ 11945510 (-)
scrt2 scrt2,LOC108249568,LOC102228875,LOC107391295 coding downstream 196278 11898818 ~ 11907613 (-)
tcf15 tcf15,LOC104919924,LOC103354327,LOC100694468,LOC102295168 coding downstream 223271 11878352 ~ 11880620 (-)
LOC120558333 NA coding upstream 105158 12224304 ~ 12230288 (-)
dnajc5aa dnajc5,LOC104933326,LOC101169856,LOC107090698 coding upstream 113959 12233105 ~ 12237737 (-)
ythdf1 LOC104938233,LOC103354577,LOC106952594,LOC100697389,LOC102786472 coding upstream 140851 12259997 ~ 12270531 (-)
nkain5 LOC103354565,LOC101477820 coding upstream 152341 12271487 ~ 12280037 (-)
uckl1a LOC103355333,LOC101079427,LOC103139074,LOC101476695,LOC102196708,LOC102308715,LOC103385400,LOC101173865 coding upstream 187112 12306258 ~ 12323341 (-)
G49024 NA non-coding downstream 40636 12003267 ~ 12063255 (-)
G48911 NA non-coding downstream 488182 11607970 ~ 11615709 (-)
G48910 ankrd52 non-coding downstream 497277 11605733 ~ 11606614 (-)
G48907 ankrd52 non-coding downstream 503383 11600292 ~ 11600508 (-)
G48886 cs non-coding downstream 524903 11576539 ~ 11578988 (-)
G49084 NA non-coding upstream 512 12119658 ~ 12121550 (-)
G49092 NA non-coding upstream 21789 12140935 ~ 12141414 (-)
G49112 NA non-coding upstream 27582 12146728 ~ 12147033 (-)
G49118 NA non-coding upstream 92597 12211743 ~ 12213541 (-)
G49115 NA non-coding upstream 124056 12243202 ~ 12244833 (-)
peds1 LOC104919928,LOC103354371 other downstream 124856 11959379 ~ 11979035 (-)
srxn1 srxn1 other downstream 212752 11885965 ~ 11891139 (-)
LOC120558961 NA other downstream 595554 11503827 ~ 11508337 (-)
G48697 NA other downstream 1370004 10641405 ~ 10733887 (-)
G48523 NA other downstream 2078066 10024994 ~ 10025825 (-)
G49083 LOC103354491,LOC102226477,LOC108232148 other upstream 7740 12126886 ~ 12128425 (-)
dnmt3ba NA other upstream 28268 12147414 ~ 12169209 (-)
ppdpfa LOC104933328,LOC101073585 other upstream 101588 12220734 ~ 12223028 (-)
fkbp1aa LOC100692950,LOC107391264,LOC103354614,LOC101168621 other upstream 269835 12388981 ~ 12391677 (-)
prickle3 prickle3,LOC102790576 other upstream 296457 12415603 ~ 12439909 (-)

Expression


Co-expression Network