arf3a (arf3,ARF3,arf3a,LOC106921537,LOC102781726,LOC106954774,LOC104956878)


Basic Information

Item Value
gene id arf3a
gene name arf3,ARF3,arf3a,LOC106921537,LOC102781726,LOC106954774,LOC104956878
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 21250701 ~ 21255464 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039801066.1
TTGCTCATCGCGAGACTATCCAGTCCTCTGCCTGAATCCAGCTGGTAGCCTGCCTGCCGTGCCGTTGAGGGTTCTGTTGCAGTTGAGGTGAGAGTTGCCATACATCATGGGGAACATCTTTGGCAACCTTTTGAAGAGCCTGATAGGCAAGAAGGAGATGAGGATTCTCATGGTGGGGCTGGACGCTGCTGGGAAAACCACCATCCTCTACAAGCTGAAGCTGGGGGAGATCGTTACCACCATTCCCACAATCGgtTTTAATGTAGAGACGGTGGAGTACAAGAACATCAGCTTCACTGTGTGGGACGTGGGTGGCCAGGACAAGATCCGTCCCCTTTGGAGGCACTACTTCCAGAACACCCAGGGGTTGATCTTTGTGGTCGACAGCAATGACCGTGAGCGGGTGAACGAAGCTCGTGAGGAACTGATGAGGATGCTGGCTGAGGACGAGCTGCGGGATGCTGTCCTTCTAGTCTTTGCCAACAAACAGGACCTGCCCAATGCCATGAATGCTGCAGAGATCACAGATAAGCTGGGCCTGCACTCTCTACGCCACCGCAACTGGTACATTCAGGCCACCTGCGCCACTAGTGGAGACGGTCTCTACGAGGGTCTGGACTGGCTGGCCAATCAGCTGAAGAACAAAAAGTGAAGAGTCCGGTCAGTAGAGTGGGGAAGAGCCTGGGTGCCAGCTCCAGGTAGTGGTTATATTTGGTCCATTGTGTTTACATGGAGAGGCAGTGCTAAAAAAACTCCTAGAGGGGTGACTCTCAATGGCTTTCTCCTCTCCAAAATACTTGTTTCATTTTgattaatttaatttgtttggATCTGTGGTGAGcgtttttaaatatttacaaaCAAATGGTGTTGaagttgacctaaatgacttaCATTCTACACACTCAATACATAAATATCCGGATGTAATAGTATAATGTAACTGTAAAGGCATATGTATTTCCCCTACTTTGCAGTCtatttgacctttgaccttaaCCCCCTTTTAATTTGTTCAGAAAACGTGATGATGTAGATTGTCAAGATGGCAGAGCAACCTTCCCTCAGATACTTTACAGTTAATGTAAATTATAAAGAATGTCATAATAGTATAGTGGGAGTACTATCTCAGAATAATTTCACATTGTTTGAAAACTGTATACTCATACAGGCTCTGATAAATGTAAAGTTGTCATTTTCTGTCCATACTTATCTTTTACCACAAAATTAGTTTTTGCTGGAAgaaatttatgttattttagattttatgcaaatgtttttattattcattatatatttattttattaggcACAAAACCTGATGACATACTGGAAAGACAAaactatttatatttttgtcaacatatatttatttgtgtatttattcatATTCGTTTGTTTATTGGTTTTATCTTCTAAGTGCATTATATGGTTTCTCTCCCCTTATTGCAATGTGCATTTACTGCTAAGGCAGCTAGTGAAAAAAGAAGCCCAATCTGCATGGAGATGGAGATGATCCCAGTACTGGCTCATGGGCTTGTAAGAGCTGTGAACAACTGCAAGCCGCtgctgtaaatacattttttgtatttgttcttAGTCGACTTGCTTGGCTCAATAAAGGTTACAATTATTTGTCTGCCAGCAGAAAGGTGTGATATCTGAACTAATACAGATGACAGGCGCACTGTACCAGCTCTGTGGCAGAGAAGAAAATGCTGCCATTGGCCTGTGGAGAGTGATGCAGCAGAGCATGAGATTGGCAATATCAGAGAGCTTACATGGTTTTCGAAAGTTTATTTTTCAAGTCAGTTTGTGCGAGCAGCTGCACTATATCCGTCAAAAGAACTCACATTGCTTGTCATCCTGATTTATTCATACCTAATTAGCGTGACATTATATGTGTTTCTTGTGTTGACCGTATCTCTGTATTATGTTGCACAAAATAACTCTAGATGCATAATTGTTGTacaaaatgtaatgtctgttttttcttgtatttttgaatggagtatttatttattttggaccGAAAGACAATTGTTGATTTTAgtgtagtttttattatttgctAACTAGATCAGACAATTGTCTTTTTGAGTGTTCACACAAatcacataattaaaaaaatatataggagAGAGGATGATAATACTGCATCATAAGGCATGTTAATACTGTACAAGATCTGTAATAAAAGTGAATTATAATAGCCTGTTTCCTCAGACTATATTTGTTAGTCTAAATTACTGCTGCTGGAACAATGCTGTACTGATAAATGTTATGGATTTAGTGTAAAGTTTACCGAACAACCTTCCAATATGCAAAAGCATGCTTTTCTATGTCAGCGCAACTGTATATATGTTTATGTAACAAGAAAAGTATACCTTGGTATTCACAGTCAAATAGAAAGTGTTGGTGATACACCTGTAGATTTTGGGGTCAGTGTGTTGGCAGATATGTATAACTGAcagtagcttgtgtgtgtgatgtgccCTCTATTATGTTTGGTGTGAAAATTGTTTTTGTGGCCTTATATTGCCAGTAGTTTATTTCTCTTTGATAACAGGTTTGTATGTTGGAATGTCCAGCATTTGAGTATCTCACCTATCTGTAACACTGATGCACTGACAGTACTGTTGTGGCTAAACATCCTTCTTTCAATGACTATTGGCAGATTTTAACtagaaaaatgttgaaaaggaAGACTGCATAACATTCCAACTGATAAAGGTTAttcaaaaaggaacaaaaaaaatgaatgaatttatttAGTGAGTGGAATATTATCAAGAGgaggaaataaaaacaacacaaactggTGCAAGTGTTGAATGATTTAATGATTCCTGGCACTACGTCGATCAATCAATAAAAAGACCGAAACACAGA
>XM_039801067.1
TTGCTCATCGCGAGACTATCCAGTCCTCTGCCTGAATCCAGCTGGTAGCCTGCCTGCCGTGCCGTTGAGGGTTGAGGTGAGAGTTGCCATACATCATGGGGAACATCTTTGGCAACCTTTTGAAGAGCCTGATAGGCAAGAAGGAGATGAGGATTCTCATGGTGGGGCTGGACGCTGCTGGGAAAACCACCATCCTCTACAAGCTGAAGCTGGGGGAGATCGTTACCACCATTCCCACAATCGgtTTTAATGTAGAGACGGTGGAGTACAAGAACATCAGCTTCACTGTGTGGGACGTGGGTGGCCAGGACAAGATCCGTCCCCTTTGGAGGCACTACTTCCAGAACACCCAGGGGTTGATCTTTGTGGTCGACAGCAATGACCGTGAGCGGGTGAACGAAGCTCGTGAGGAACTGATGAGGATGCTGGCTGAGGACGAGCTGCGGGATGCTGTCCTTCTAGTCTTTGCCAACAAACAGGACCTGCCCAATGCCATGAATGCTGCAGAGATCACAGATAAGCTGGGCCTGCACTCTCTACGCCACCGCAACTGGTACATTCAGGCCACCTGCGCCACTAGTGGAGACGGTCTCTACGAGGGTCTGGACTGGCTGGCCAATCAGCTGAAGAACAAAAAGTGAAGAGTCCGGTCAGTAGAGTGGGGAAGAGCCTGGGTGCCAGCTCCAGGTAGTGGTTATATTTGGTCCATTGTGTTTACATGGAGAGGCAGTGCTAAAAAAACTCCTAGAGGGGTGACTCTCAATGGCTTTCTCCTCTCCAAAATACTTGTTTCATTTTgattaatttaatttgtttggATCTGTGGTGAGcgtttttaaatatttacaaaCAAATGGTGTTGaagttgacctaaatgacttaCATTCTACACACTCAATACATAAATATCCGGATGTAATAGTATAATGTAACTGTAAAGGCATATGTATTTCCCCTACTTTGCAGTCtatttgacctttgaccttaaCCCCCTTTTAATTTGTTCAGAAAACGTGATGATGTAGATTGTCAAGATGGCAGAGCAACCTTCCCTCAGATACTTTACAGTTAATGTAAATTATAAAGAATGTCATAATAGTATAGTGGGAGTACTATCTCAGAATAATTTCACATTGTTTGAAAACTGTATACTCATACAGGCTCTGATAAATGTAAAGTTGTCATTTTCTGTCCATACTTATCTTTTACCACAAAATTAGTTTTTGCTGGAAgaaatttatgttattttagattttatgcaaatgtttttattattcattatatatttattttattaggcACAAAACCTGATGACATACTGGAAAGACAAaactatttatatttttgtcaacatatatttatttgtgtatttattcatATTCGTTTGTTTATTGGTTTTATCTTCTAAGTGCATTATATGGTTTCTCTCCCCTTATTGCAATGTGCATTTACTGCTAAGGCAGCTAGTGAAAAAAGAAGCCCAATCTGCATGGAGATGGAGATGATCCCAGTACTGGCTCATGGGCTTGTAAGAGCTGTGAACAACTGCAAGCCGCtgctgtaaatacattttttgtatttgttcttAGTCGACTTGCTTGGCTCAATAAAGGTTACAATTATTTGTCTGCCAGCAGAAAGGTGTGATATCTGAACTAATACAGATGACAGGCGCACTGTACCAGCTCTGTGGCAGAGAAGAAAATGCTGCCATTGGCCTGTGGAGAGTGATGCAGCAGAGCATGAGATTGGCAATATCAGAGAGCTTACATGGTTTTCGAAAGTTTATTTTTCAAGTCAGTTTGTGCGAGCAGCTGCACTATATCCGTCAAAAGAACTCACATTGCTTGTCATCCTGATTTATTCATACCTAATTAGCGTGACATTATATGTGTTTCTTGTGTTGACCGTATCTCTGTATTATGTTGCACAAAATAACTCTAGATGCATAATTGTTGTacaaaatgtaatgtctgttttttcttgtatttttgaatggagtatttatttattttggaccGAAAGACAATTGTTGATTTTAgtgtagtttttattatttgctAACTAGATCAGACAATTGTCTTTTTGAGTGTTCACACAAatcacataattaaaaaaatatataggagAGAGGATGATAATACTGCATCATAAGGCATGTTAATACTGTACAAGATCTGTAATAAAAGTGAATTATAATAGCCTGTTTCCTCAGACTATATTTGTTAGTCTAAATTACTGCTGCTGGAACAATGCTGTACTGATAAATGTTATGGATTTAGTGTAAAGTTTACCGAACAACCTTCCAATATGCAAAAGCATGCTTTTCTATGTCAGCGCAACTGTATATATGTTTATGTAACAAGAAAAGTATACCTTGGTATTCACAGTCAAATAGAAAGTGTTGGTGATACACCTGTAGATTTTGGGGTCAGTGTGTTGGCAGATATGTATAACTGAcagtagcttgtgtgtgtgatgtgccCTCTATTATGTTTGGTGTGAAAATTGTTTTTGTGGCCTTATATTGCCAGTAGTTTATTTCTCTTTGATAACAGGTTTGTATGTTGGAATGTCCAGCATTTGAGTATCTCACCTATCTGTAACACTGATGCACTGACAGTACTGTTGTGGCTAAACATCCTTCTTTCAATGACTATTGGCAGATTTTAACtagaaaaatgttgaaaaggaAGACTGCATAACATTCCAACTGATAAAGGTTAttcaaaaaggaacaaaaaaaatgaatgaatttatttAGTGAGTGGAATATTATCAAGAGgaggaaataaaaacaacacaaactggTGCAAGTGTTGAATGATTTAATGATTCCTGGCACTACGTCGATCAATCAATAAAAAGACCGAAACACAGA

Function

symbol description
arf3a Predicted to enable GTP binding activity. Predicted to be involved in intracellular protein transport and vesicle-mediated transport. Predicted to be active in cytoplasm and plasma membrane. Orthologous to human ARF3 (ADP ribosylation factor 3).
arf3 Predicted to enable GTP binding activity. Involved in retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum. Located in extracellular exosome.

NR:

description
PREDICTED: ADP-ribosylation factor 3 isoform X1

GO:

id name namespace
GO:0006661 phosphatidylinositol biosynthetic process biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0015031 protein transport biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07937 ARF1_2; ADP-ribosylation factor 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039801066.1 True 2892 mRNA 0.39 5 21250701 21255464
XM_039801067.1 False 2881 mRNA 0.39 5 21250701 21255464

Neighbor

gene id symbol gene type direction distance location
erbb3b LOC103356917 coding downstream 2544 21234266 ~ 21248157 (-)
pa2g4b LOC104932430,LOC103356918,LOC101170587,LOC101465390 coding downstream 17272 21224079 ~ 21233429 (-)
LOC120559628 LOC108235222,LOC103385139,LOC106524753,LOC103362054 coding downstream 109639 21139903 ~ 21141062 (-)
rbms2b LOC104956888,LOC103362050,LOC102783848,LOC102303282 coding downstream 184675 21048844 ~ 21066026 (-)
rarga rarg coding downstream 244433 20963746 ~ 21006268 (-)
wnt10b wnt10b,LOC102780570 coding upstream 2797 21258261 ~ 21277735 (-)
ikzf4 LOC103356912,LOC106096427,LOC104956881 coding upstream 26493 21281957 ~ 21291146 (-)
dnajc22 dnajc22 coding upstream 35797 21291261 ~ 21295137 (-)
acvr1ba acvr1b,LOC104956875,LOC101062677 coding upstream 107836 21363300 ~ 21376234 (-)
acvrl1 LOC104932540,LOC104956873,LOC103385089 coding upstream 123903 21379367 ~ 21392760 (-)
LOC120559347 NA non-coding downstream 28069 21219967 ~ 21222632 (-)
G51673 NA non-coding downstream 82953 21166722 ~ 21167748 (-)
G51606 NA non-coding downstream 201915 21046049 ~ 21048786 (-)
G51620 NA non-coding downstream 208757 21037082 ~ 21041944 (-)
G51614 NA non-coding downstream 219002 21025133 ~ 21031699 (-)
G51721 NA non-coding upstream 35682 21291146 ~ 21293845 (-)
G51767 NA non-coding upstream 138978 21394442 ~ 21395700 (-)
G51834 NA non-coding upstream 242680 21498144 ~ 21503262 (-)
LOC120559689 NA non-coding upstream 257539 21513003 ~ 21515984 (-)
LOC120559690 NA non-coding upstream 276936 21532400 ~ 21532964 (-)
esyt1a LOC104932417,LOC104956886,LOC103356920 other downstream 33982 21199340 ~ 21216719 (-)
fmnl3 fmnl3 other downstream 51658 21167904 ~ 21199043 (-)
LOC120558386 hoxc10,LOC100690382 other downstream 298183 20820171 ~ 20952518 (-)
LOC120558911 LOC103362803,LOC100693258 other downstream 1435383 19799205 ~ 19815318 (-)
kcnd3 kcnd3,LOC102776651,LOC102303593,LOC100697611,LOC101470631 other downstream 2172920 18945968 ~ 19077781 (-)
si:dkey-151g10.3 wnk3 other upstream 714588 21970052 ~ 22015043 (-)
LOC120559880 LOC104932903,LOC103358260,LOC104967532,LOC107390844 other upstream 967685 22223149 ~ 22229421 (-)
G52226 NA other upstream 1274142 22529606 ~ 22530708 (-)
si:ch211-150o23.3 LOC103367744,LOC101075068 other upstream 1958634 23214098 ~ 23218900 (-)
G52501 eno1,LOC104965722,LOC103151087 other upstream 2053036 23308500 ~ 23319684 (-)

Expression


Co-expression Network