lrrc38a (LOC103362254,LOC104932799,LOC101069713,LOC101473207)


Basic Information

Item Value
gene id lrrc38a
gene name LOC103362254,LOC104932799,LOC101069713,LOC101473207
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 3534079 ~ 3553937 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039801121.1
CGTTCTCTTGCACACTCTCTCTTTTGCTCCTCCCCTCTCTTACCTCAAAGCCAGCAGGCTGCTATTTGATCCAGACTGCTTTTTACATGATCTCCTGGAATACAAAGCTCCCCGGCTACTCCATGGCTTTTCGGGTTCTTCTCGCGTTGCGGTGCAGAGAGCACAACAGGATGCCAGCGCCACGCTGAACCTACATCGGCCGGCCTTtccttcccctccccctcctgtgATCTTCACCTTTCTATCTGTCCGTCTCCCTGACCTTCCTTCTCACCCCATGCTgagaccccctccccccccaatcTCCTAGTTAATGTTGCCGCCCCCTCGACAATGATACCATGCATTAACTGGCTGCAGCCTTTCCTTGCCTTGATCTCCTCGACCTTGCTTACGCGAGGCCACATCTGTCCATCCAGCTGTTTGTGTCCAGACCACCACACTGTGAACTGCACCAACCGAGGTCTTACCAGAGTCCCAGACCCCATCCCTCTGGGTGTTCGCCGTCTCCTGCTCTCCAACAACTGGATTCCCTGGATCCCTTCCGACTTCTTGGTCCTCTACAGCGATCTGGTCTACCTGGACCTGAGGAATAACTCCCTCTCCCAGCTGGAGCCAGGTACCCTGAGCACCTCCTCTAGATTAGTCTTCTTGGACCTGGGGAACAACAACCTGACGGAAATCTCCTCGGGAACATTTGGGGAGTCCAGGAGTCTGATTAAACTACGACTGGGGAACAACCCCTACCTAAACATGGTAGGCAGGGACGCTTTCACGGGGCTGACTTCTTTGAGGGAGCTGGAGCTGGAGAGGAATGGTCTCACAGCCCTGGACGTCATGGTCCTGGAATCACTGCCCTCCCTCCGGATGCTGCGTCTGGATGGCAACCCCTGGCTTTGCAACTGCCACTTTTCCAAACTGTTTGTATGGCTGACAGAGAACCGCCACAAACTCCCAAAGGGTATGGAGGGGATAGAGTGCTCTCTTCCTATGGATGGGCGTCGTGTTCCCCTGAGTTTACTCTCTGAAGACAGTTTTCAGAAGTGCCGTGGTACCCTCACCCTCACTGACTACCTGATCGTCATCTTCTCCGGTATCTCTGTCTCAGTAGCGGCCATCGTGGCCAGCTTCTTCCTTGCTTCCACAGTCCATTGCTTCCAGCGCCTCAGCAAAGGCAGCAAAGGAGATGAGGAGGAAGGCAACGACTGATGGGGAAAGGGGAAATGGATTAAATCAAGTATTTCATACATAACTGTTGCTCAGAACTCAACAAAACATGAGAGCAAGGAGTgattgtggtggtggtggtggggaggTGGGGATGAAAAGGCATTAAAGGTAAATGCACATCAAGAAAGCTTGTAATGTCAAATCCAAGATTACACATGAACTGTCATGAGAATCA

Function

NR:

description
PREDICTED: leucine-rich repeat-containing protein 38-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039801121.1 True 1405 mRNA 0.53 2 3534079 3553937

Neighbor

gene id symbol gene type direction distance location
LOC120559410 NA coding downstream 75009 3458427 ~ 3459070 (-)
LOC120559390 NA coding downstream 107758 3383690 ~ 3426321 (-)
LOC120559411 NA coding downstream 194359 3331769 ~ 3339720 (-)
LOC120559400 NA coding downstream 281028 3251882 ~ 3253051 (-)
LOC120559395 NA coding downstream 341909 3185278 ~ 3192170 (-)
LOC120559443 LOC103362253,LOC101473498 coding upstream 10572 3564509 ~ 3628773 (-)
trappc6b trappc6b coding upstream 181562 3735499 ~ 3745613 (-)
foxp3b NA coding upstream 217116 3771053 ~ 3809905 (-)
LOC120559452 suv39h1,LOC102791492 coding upstream 326373 3880310 ~ 3909770 (-)
si:dkey-16n15.6 LOC103362245 coding upstream 360056 3913993 ~ 3928156 (-)
G46920 NA non-coding downstream 15410 3518437 ~ 3518669 (-)
G46816 NA non-coding downstream 16338 3516703 ~ 3517741 (-)
LOC120559427 NA non-coding downstream 83891 3447209 ~ 3450188 (-)
G46856 NA non-coding downstream 375507 3157691 ~ 3158572 (-)
LOC120559426 NA non-coding downstream 404226 3121212 ~ 3129853 (-)
G46979 NA non-coding upstream 150084 3704021 ~ 3704389 (-)
G46995 NA non-coding upstream 276822 3830759 ~ 3831182 (-)
G46999 NA non-coding upstream 289211 3843148 ~ 3843663 (-)
G47001 LOC101475032,LOC100694027,LOC104957049,LOC104932793 non-coding upstream 308671 3862608 ~ 3865304 (-)
G47002 NA non-coding upstream 311418 3865355 ~ 3865796 (-)
LOC120559401 NA other downstream 40116 3491004 ~ 3493963 (-)
G46817 NA other downstream 248156 3283041 ~ 3285923 (-)
G46698 NA other downstream 1186575 2346505 ~ 2347504 (-)
LOC120559407 NA other downstream 1198378 2329654 ~ 2335701 (-)
rps21 rps21 other downstream 2288851 1236385 ~ 1245228 (-)
LOC120559679 LOC103384848,LOC102790723,LOC100693496 other upstream 380574 3934511 ~ 3950171 (-)
G47058 NA other upstream 401089 3955026 ~ 3955529 (-)
G47059 LOC102202574 other upstream 401667 3955604 ~ 3956382 (-)
dedd dedd,LOC103374682 other upstream 1037510 4591447 ~ 4621836 (-)
G47252 NA other upstream 1176564 4730501 ~ 4731141 (-)

Expression


Co-expression Network