trappc6b (trappc6b)


Basic Information

Item Value
gene id trappc6b
gene name trappc6b
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 3735499 ~ 3745613 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039801129.1
TAATTctaggaagaagaagaagaacaacaacaagacGTGAGCAGTGCAGCAGAAAGCGTCTGTTAAATTTCTGTCCacaggtgtgtctgtgtccgcGGTCAGTGTGAACGGAATGGTGTCGGTCCCGGTGTGGTGACCGGCCGCGGAACCAGCTGATAGACCGGACCGCAGTCGGGAGAGGAACAACATGGCCGACGAAGCTGCTTTCCAGTTTTTACACAACGAAGTGATACAATACATTTACAAGTCAGCTGAGAGCGGAGAGACGGAGAATGGGAGACATATCGCCAAACTGGAGAATATGGGATTCAGGGTCGGCCAGGGGCTAATAGAGAGACTAACAAAAGACACAGCACGGTTCAAAGATGAGCTGGACATCATGAAGTTTGTCTGCAAAGACTTCTGGACCTGTGTGTTCAAGAAGCAGATCGACAACCTTCGGACCAATCACCAGggcATCTATGTTCTCCAGGACAACAAGTTCCGCCTGCTGAGTCAGCTGTCCGCTGGGAAACAGTATCTGGAACACGCCCCAAAGTATCTGTCCTTCTCCTGTGGTCTGGTGAGAGGAGCGCTGTCCAGCCTGGGGGTGAAGAGTATCGTGACTGCTGAGGTGTCCATCATGCCTGCGTGTAAGACATGCATCACTCGTCTATCATCCAATCAGAGACAAGAAAAGTGGTTGTAATGTAACGTTGATGGA
>XM_039801130.1
ATTctaggaagaagaagaagaacaacaacaagacGTGAGCAGTGCAGCAGAAAGCGTCTGTTAAATTTCTGTCCacaggtgtgtctgtgtccgcGGTCAGTGTGAACGGAATGGTGTCGGTCCCGGTGTGGTGACCGGCCGCGGAACCAGCTGATAGACCGGACCGCAGTCGGGAGAGGAACAACATGGCCGACGAAGCTGCTTTCCAGTTTTTACACAACGAAGTGATACAATACATTTACAAGTCAGCTGAGAGCGGAGAGACGGAGAATGGGAGACATATCGCCAAACTGGAGAATATGGGATTCAGGGTCGGCCAGGGGCTAATAGAGAGACTAACAAAAGACACAGCACGGTTCAAAGATGAGCTGGACATCATGAAGTTTGTCTGCAAAGACTTCTGGACCTGTGTGTTCAAGAAGCAGATCGACAACCTTCGGACCAATCACCAGggcATCTATGTTCTCCAGGACAACAAGTTCCGCCTGCTGAGTCAGCTGTCCGCTGGGAAACAGTATCTGGAACACGCCCCAAAGTATCTGTCCTTCTCCTGTGGTCTGGTGAGAGGAGCGCTGTCCAGCCTGGGGGTGAAGAGTATCGTGACTGCTGAGGTGTCCATCATGCCTGCGTgTAAATTCCAGATCATGATCCAGAAAATGTAGCGACTAGCTTAGCCACACTAACTCTGCACTCTTCTGCCTTCATATGTTCTTGCATTTTTGTCATTAAAGGGAAATGCGTCCATTTTTCATCATTAAAATATTCTCCTATTAACTTTAAATTGCAGTTACAATTTCATTTATGATTGACAAAAGTTATATGAATAACCCTTGATGCCATGATGATTATTTCTGAGAATGATTTtatgttatttctttttatataaaGTCTGAGTCATTAAATGAATGTGTAAGTATTCTCATTATGGAAGGTCTGTGGCACCCTCTGGTGGCACAGGTAAAATGTCAGTTTGAAATGATACTGAGTAAAGTGTGAATCCATTTTAATAAATGATCAAATGTATTGAAGTA

Function

symbol description
trappc6b Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to act upstream of or within Golgi vesicle transport; nervous system development; and regulation of GTPase activity. Predicted to be located in Golgi apparatus and endoplasmic reticulum. Predicted to be part of TRAPP complex. Predicted to be active in cis-Golgi network and trans-Golgi network. Is expressed in central nervous system. Used to study syndromic intellectual disability. Orthologous to human TRAPPC6B (trafficking protein particle complex subunit 6B).

NR:

description
PREDICTED: trafficking protein particle complex subunit 6B

GO: NA

KEGG:

id description
K20304 TRAPPC6, TRS33; trafficking protein particle complex subunit 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039801129.1 False 703 mRNA 0.50 5 3736744 3745613
XM_039801130.1 True 1031 mRNA 0.44 6 3735499 3745611

Neighbor

gene id symbol gene type direction distance location
LOC120559443 LOC103362253,LOC101473498 coding downstream 106726 3564509 ~ 3628773 (-)
lrrc38a LOC103362254,LOC104932799,LOC101069713,LOC101473207 coding downstream 181562 3534079 ~ 3553937 (-)
LOC120559410 NA coding downstream 276429 3458427 ~ 3459070 (-)
LOC120559390 NA coding downstream 309178 3383690 ~ 3426321 (-)
LOC120559411 NA coding downstream 395779 3331769 ~ 3339720 (-)
foxp3b NA coding upstream 25440 3771053 ~ 3809905 (-)
LOC120559452 suv39h1,LOC102791492 coding upstream 134697 3880310 ~ 3909770 (-)
si:dkey-16n15.6 LOC103362245 coding upstream 168380 3913993 ~ 3928156 (-)
LOC120558369 NA coding upstream 206688 3952301 ~ 3954770 (-)
asxl1 LOC102292987,LOC107098928 coding upstream 237660 3983273 ~ 4005648 (-)
G46979 NA non-coding downstream 31110 3704021 ~ 3704389 (-)
G46920 NA non-coding downstream 216830 3518437 ~ 3518669 (-)
G46816 NA non-coding downstream 217758 3516703 ~ 3517741 (-)
LOC120559427 NA non-coding downstream 285311 3447209 ~ 3450188 (-)
G46856 NA non-coding downstream 576927 3157691 ~ 3158572 (-)
G46995 NA non-coding upstream 85146 3830759 ~ 3831182 (-)
G46999 NA non-coding upstream 97535 3843148 ~ 3843663 (-)
G47001 LOC101475032,LOC100694027,LOC104957049,LOC104932793 non-coding upstream 116995 3862608 ~ 3865304 (-)
G47002 NA non-coding upstream 119742 3865355 ~ 3865796 (-)
G47004 NA non-coding upstream 127938 3873551 ~ 3873769 (-)
LOC120559401 NA other downstream 241536 3491004 ~ 3493963 (-)
G46817 NA other downstream 449576 3283041 ~ 3285923 (-)
G46698 NA other downstream 1387995 2346505 ~ 2347504 (-)
LOC120559407 NA other downstream 1399798 2329654 ~ 2335701 (-)
rps21 rps21 other downstream 2490271 1236385 ~ 1245228 (-)
LOC120559679 LOC103384848,LOC102790723,LOC100693496 other upstream 188898 3934511 ~ 3950171 (-)
G47058 NA other upstream 209413 3955026 ~ 3955529 (-)
G47059 LOC102202574 other upstream 209991 3955604 ~ 3956382 (-)
dedd dedd,LOC103374682 other upstream 845834 4591447 ~ 4621836 (-)
G47252 NA other upstream 984888 4730501 ~ 4731141 (-)

Expression


Co-expression Network