LOC120559452 (suv39h1,LOC102791492)


Basic Information

Item Value
gene id LOC120559452
gene name suv39h1,LOC102791492
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 3880310 ~ 3909770 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039801134.1
GAGAGGGGTGATAGATGACGCTCATCCAATCAGCAGCCGCTACAGTCTACCCTGCAGCAGGATCCTCCCCACCAATGTAGCTTATTCTATTTTGGCGGCTGTGTGGAAAACATGGCGGAAAATTTGAAAGATTGCAGCGTGCCTTGGAAGATGTCCTGGGATGAGCTGGAAGCCCTCTGTCGCAGAGAAAGACTCCACTGTAAACAGCTGGGGGTGAACAGAACCAATCCCAATGAGTATGATGTGGAATTCCTCTGCGACTACAAGAAGACCAAGGAGGAGGAGTTGTACCTGGTAAAGTGGAGGGGCTTTCCAGAGTCTGATAACACCTGGGAACCTAAGAGGAACCTCAAATGCCCCAAACTGATGAAGCAGTTCCACCGGGACCTGGAGCAGGAGCTGAGGCGCCACAAGAGACGCTGCACCCCTAAAAGACTGGATAAGGAAGTTGCCTCGTACCTGGTCCAAAAAGCCAAACTCCGTCAGATTTTGCAGCGCTGGGAGGCCCATTTGAATCAGACACGCAACCACCCAGGTCGCATTTTTGTCCTAAACGAAGTGGACTTTGAGGGCCCCCCAAAAAACTTCACCTACATCAACAACTACAAAGTAGGCCAGGGCATTGTGTTAGATGAGATGGCCGTGGGCTGCGAGTGTAAGAACTGTTTAGAGGAGCCGATAAATGGCTGCTGCCCTGGGGCCTCCCTGCACCGCATGGCCTACAATGACAAGGGTCAGGTCCGGATCCGGCCGGGACAGCCCATTTACGAGTGTAACTCTCGATGCAGCTGTAGCCTCGATTGTCCGAACAGAGTGGTGCAGAAGGGCATCCAGTTCGACCTGTGCATCTTTAAGACGGAGAACGGCCGGGGGTGGGGTGTCCGCACGCTGCAGCATATCAAGAAGAACACATTTATCATGGAGTACGTGGGAGAGATCATCACGACGGATGAAGCCGAGAGGAGGGGTCATGTGTACGACCGGCAGGGCTCTACGTACCTGTTTGACCTGGACTACGTGGAGGACGTGTACACAGTGGATGCAGCTCACCATGGCAACATCTCCCACTTTGTCAATCACAGCTGTAACCCCAACCTGCAGGTATATAATGTGTTCATCGACAACATTGATGAGAGACTCCCGAGAATTGCCCTATTTTCAACACGGGCTATTCGGGCAGGAGAAGAGCTCACCTTTGACTACAAAATGCAAATTGACCCGGTCGATACAGAAAGCACCAAAATGGACTCCAGTTTCAGTCTCGCGGGGCTCCCCAGCTCTCCGAAGAAGCGGATTCGAGTGGAGTGCCGGTGTGGATCGGACTCATGTCGAAAATACCTGTTCTGACAAAGGACTGCTGAGAACGCAACACTGACCGCAGTGGCAAGATGAGGAACCTTGTACAGATTTGTatatgaataattttttttttttttatgaaaactgAAATACACCCTCAACATTTTATATGTGAACATATGACAAACTCTTACCAAGATGAAAACTAGAATTTCACATCTGTGATTTCCTTGAACAGAGCTGCTCTGTTTCCACTGAATTGAACCCTGCTTCAGTGGATTATTTGAGTACTTGATTCCAGTGATTTTAAATATCTTTCTATAATTAAGATAAGCACGTCTATTAGCCCATCCCTAGATGGCAGTACACCGAATGACGGATATTTACTTTTTGAGTAAATCATATTCTGTGCTCGCTTTCTCTGTGCTGTATAAATGTATTCTACAAGGACATTAAATGGACAACTGCCCGAGCCTGTTCATCACTGTTCAATGATAATTCCGGtttattttagcttgtttt
>XM_039801135.1
AACCTTAAATATGCACGCTTGCCTGTCCTCGGGTTTACATAACACGAACGAGAGCAGTGGGGATTGTACATTATGGTGACGAGGAAGTTAGTTGTCCGAAGTAACGTGAACGATTCTTGCAGTCTAATGCAGCCTTTTGTGGGGAAGTTCTCCGCTTGTGAATAGATATTGACTTTAACTTGGCCTAGAAATAGGCTATCTGTTTTAGAAAGCATAACGTTACATGAATAAGTTTAGCGCTGTGCATTTTAGGCGCAGCCTGCGTGGTTTAGTGGTTAAAACTGTTTTCGATAGGCTTCACGCGCCATGTAGCCCCACGTACACGTTTAAATTGAATTTAATGTGTTTTCGGCTAATATTTGATGTTTCCGTGATGGGCAACGTTATGTGTGCGACGATTCTAATCCAAAAGACTGGTTCCGGCTTCGGTTTCTTCGTCTTTCTTTAAAAACACGAGATTGCAGCGTGCCTTGGAAGATGTCCTGGGATGAGCTGGAAGCCCTCTGTCGCAGAGAAAGACTCCACTGTAAACAGCTGGGGGTGAACAGAACCAATCCCAATGAGTATGATGTGGAATTCCTCTGCGACTACAAGAAGACCAAGGAGGAGGAGTTGTACCTGGTAAAGTGGAGGGGCTTTCCAGAGTCTGATAACACCTGGGAACCTAAGAGGAACCTCAAATGCCCCAAACTGATGAAGCAGTTCCACCGGGACCTGGAGCAGGAGCTGAGGCGCCACAAGAGACGCTGCACCCCTAAAAGACTGGATAAGGAAGTTGCCTCGTACCTGGTCCAAAAAGCCAAACTCCGTCAGATTTTGCAGCGCTGGGAGGCCCATTTGAATCAGACACGCAACCACCCAGGTCGCATTTTTGTCCTAAACGAAGTGGACTTTGAGGGCCCCCCAAAAAACTTCACCTACATCAACAACTACAAAGTAGGCCAGGGCATTGTGTTAGATGAGATGGCCGTGGGCTGCGAGTGTAAGAACTGTTTAGAGGAGCCGATAAATGGCTGCTGCCCTGGGGCCTCCCTGCACCGCATGGCCTACAATGACAAGGGTCAGGTCCGGATCCGGCCGGGACAGCCCATTTACGAGTGTAACTCTCGATGCAGCTGTAGCCTCGATTGTCCGAACAGAGTGGTGCAGAAGGGCATCCAGTTCGACCTGTGCATCTTTAAGACGGAGAACGGCCGGGGGTGGGGTGTCCGCACGCTGCAGCATATCAAGAAGAACACATTTATCATGGAGTACGTGGGAGAGATCATCACGACGGATGAAGCCGAGAGGAGGGGTCATGTGTACGACCGGCAGGGCTCTACGTACCTGTTTGACCTGGACTACGTGGAGGACGTGTACACAGTGGATGCAGCTCACCATGGCAACATCTCCCACTTTGTCAATCACAGCTGTAACCCCAACCTGCAGGTATATAATGTGTTCATCGACAACATTGATGAGAGACTCCCGAGAATTGCCCTATTTTCAACACGGGCTATTCGGGCAGGAGAAGAGCTCACCTTTGACTACAAAATGCAAATTGACCCGGTCGATACAGAAAGCACCAAAATGGACTCCAGTTTCAGTCTCGCGGGGCTCCCCAGCTCTCCGAAGAAGCGGATTCGAGTGGAGTGCCGGTGTGGATCGGACTCATGTCGAAAATACCTGTTCTGACAAAGGACTGCTGAGAACGCAACACTGACCGCAGTGGCAAGATGAGGAACCTTGTACAGATTTGTatatgaataattttttttttttttatgaaaactgAAATACACCCTCAACATTTTATATGTGAACATATGACAAACTCTTACCAAGATGAAAACTAGAATTTCACATCTGTGATTTCCTTGAACAGAGCTGCTCTGTTTCCACTGAATTGAACCCTGCTTCAGTGGATTATTTGAGTACTTGATTCCAGTGATTTTAAATATCTTTCTATAATTAAGATAAGCACGTCTATTAGCCCATCCCTAGATGGCAGTACACCGAATGACGGATATTTACTTTTTGAGTAAATCATATTCTGTGCTCGCTTTCTCTGTGCTGTATAAATGTATTCTACAAGGACATTAAATGGACAACTGCCCGAGCCTGTTCATCACTGTTCAATGATAATTCCGGtttattttagcttgtttt

Function

symbol description
suv39h1 Enables histone methyltransferase activity (H3-K9 specific) and protein N-terminus binding activity. Involved in rDNA heterochromatin assembly. Acts upstream of or within cellular response to DNA damage stimulus; cellular response to hypoxia; and negative regulation of transcription by RNA polymerase II. Located in nucleus and rDNA heterochromatin. Part of chromatin silencing complex.

NR:

description
PREDICTED: histone-lysine N-methyltransferase SUV39H1

GO:

id name namespace
GO:0031017 exocrine pancreas development biological_process
GO:0051567 histone H3-K9 methylation biological_process
GO:0018022 peptidyl-lysine methylation biological_process
GO:0060042 retina morphogenesis in camera-type eye biological_process
GO:0005634 nucleus cellular_component
GO:0005694 chromosome cellular_component
GO:0008270 zinc ion binding molecular_function
GO:0018024 histone-lysine N-methyltransferase activity molecular_function

KEGG:

id description
K11419 SUV39H, CLR4; [histone H3]-lysine9 N-trimethyltransferase SUV39H

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039801134.1 False 1821 mRNA 0.48 6 3880310 3909770
XM_039801135.1 True 2148 mRNA 0.47 6 3880310 3909548

Neighbor

gene id symbol gene type direction distance location
foxp3b NA coding downstream 70405 3771053 ~ 3809905 (-)
trappc6b trappc6b coding downstream 134697 3735499 ~ 3745613 (-)
LOC120559443 LOC103362253,LOC101473498 coding downstream 251537 3564509 ~ 3628773 (-)
lrrc38a LOC103362254,LOC104932799,LOC101069713,LOC101473207 coding downstream 326373 3534079 ~ 3553937 (-)
LOC120559410 NA coding downstream 421240 3458427 ~ 3459070 (-)
si:dkey-16n15.6 LOC103362245 coding upstream 4223 3913993 ~ 3928156 (-)
LOC120558369 NA coding upstream 42531 3952301 ~ 3954770 (-)
asxl1 LOC102292987,LOC107098928 coding upstream 73503 3983273 ~ 4005648 (-)
LOC120559100 LOC100709480,LOC103374188,LOC101478014,LOC102305352,LOC102202239,LOC102794305 coding upstream 373418 4283188 ~ 4381061 (-)
efhd2 efhd2,LOC102781412 coding upstream 767930 4677700 ~ 4705540 (-)
G47005 NA non-coding downstream 2953 3876200 ~ 3877357 (-)
G47004 NA non-coding downstream 6541 3873551 ~ 3873769 (-)
G47002 NA non-coding downstream 14514 3865355 ~ 3865796 (-)
G47001 LOC101475032,LOC100694027,LOC104957049,LOC104932793 non-coding downstream 15006 3862608 ~ 3865304 (-)
G46999 NA non-coding downstream 36647 3843148 ~ 3843663 (-)
G47042 NA non-coding upstream 19369 3929139 ~ 3929439 (-)
G47043 NA non-coding upstream 20540 3930310 ~ 3930663 (-)
G47083 NA non-coding upstream 57006 3966776 ~ 3969129 (-)
G47091 NA non-coding upstream 71407 3981177 ~ 4012698 (-)
G47092 NA non-coding upstream 140740 4050510 ~ 4059713 (-)
LOC120559401 NA other downstream 386347 3491004 ~ 3493963 (-)
G46817 NA other downstream 594387 3283041 ~ 3285923 (-)
G46698 NA other downstream 1532806 2346505 ~ 2347504 (-)
LOC120559407 NA other downstream 1544609 2329654 ~ 2335701 (-)
rps21 rps21 other downstream 2635082 1236385 ~ 1245228 (-)
LOC120559679 LOC103384848,LOC102790723,LOC100693496 other upstream 24741 3934511 ~ 3950171 (-)
G47058 NA other upstream 45256 3955026 ~ 3955529 (-)
G47059 LOC102202574 other upstream 45834 3955604 ~ 3956382 (-)
dedd dedd,LOC103374682 other upstream 681677 4591447 ~ 4621836 (-)
G47252 NA other upstream 820731 4730501 ~ 4731141 (-)

Expression


Co-expression Network