acvr1ba (acvr1b,LOC104956875,LOC101062677)


Basic Information

Item Value
gene id acvr1ba
gene name acvr1b,LOC104956875,LOC101062677
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 21363300 ~ 21376234 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039801193.1
GCcaggctggctggctggctggctagcGTTTGGCGGTGTGGTGTGTGCGGTCGGACTGTGGTTGTGTTTCAGGTCTGGTCGTGTTGATAACGACACACTTTGGACGCATTTCATCTTGGAGAGATGGGAATTTTGAAGAAATGTCTCTAAAAGAAATTGCCCTAACACTGCTTGCCCTGTTCGGGTTAGTGGCAGTCGGTAATGCTCTACGTTGTAACTGCACGAACTGTGAGAAGACCAGCTATGAGTGTGAAACGGATGGCGCCTGCATGGCCTCCACATACTTCAACCAGGGGAAGGAGCAACACGTACGCATTTGCATCGACCGGGACAACCTGGTCCCCCCTGGACAACCTTTCTACTGTCTGAGTGCGGAAGGCCTGCTCAACACACATTGCTGCTATGTAGATTACTGTAACAGTATTGAAGTCCCTGTCCCAACAAAAGAGGGGGACTGGTCAGCCTCATCGAGCTCCTGGGGGCCGGTGGAGCTGGTGGCGGTCATCGCAGGGCCGGTGTTCCTTCTCTGTGTGCTGCTTATGGTCGGCGTGTTCCTGTTCCAGTATCACCAGAGGGCCTATAGCCACAGGCAGAGGCTGGAGGTAGAGGACCCATCATGTGACCATCTGTACTTGGCCAAGGACAAGACCCTGCAGGACCTCATCTATGACATGTCCACCTCCGGATCAGGCTCTGGTTTGCCCCTGTTTGTGCAGCGGACGGTGGCTAGGACCATCGTGCTACAGGAGATAATAGGAAAGGGTCGTTTTGGTGAGGTGTGGAGAGGGAAGTGGAGGGGAGGAGATGTGGCGGTGAAGATCTTCTCATCCAGAGAGGAGCGCTCCTGGTTCAGAGAGGCTGAGATCTACCAGACAATCATGCTGCGGCACGAAAACATCCTGGGATTCATTGCAGCAGACAATAAAGACAATGGAACATGGACTCAGCTGTGGCTGGTGTCAGACTATCATGAGCACGGCTCTCTTTTTGACTACCTGAACCGCTACTCTGTCACCATCGAGGGCATGATCAAACTGGCCCTGTCGGCTGCCAGCGGCCTAGCACACCTACACATGGAGATCCTCGGCACTCAGGGTAAGCCAGGCATTGCTCACCGTGACCTTAAGTCTAAAAATATCCTGGTTAAGAAGAACGGCATGTGTGCCATAGCTGACCTCGGCCTGGCAGTCCGCCACGAGTCAATCACAGACACAATCGATATAGCACCGAACCAGCGCGTGGGCACTAAGAGGTACATGGCTCCAGAAGTCCTGGACGAAACCATCAACATGAAACACTTTGATTCCTTCAAGTGTGCTGACATCTACGCGCTGGGCCTGGTGTACTGGGAGATTGCACGCCGCTGCAACGCAGGAGGTATCCACGAGGAGTACCAGCTGCCCTACTACGACCTTGTGCCCTCTGACCCCGCCATAGAAGAGATGAGGAAGGTGGTGTGTGACCAGAAACTGAGGCCCAATGTGCCCAACTGGTGGCAGAGCTACGAGTCACTGCGTGTGATGGGGAAGATCATGAGGGAGTGCTGGTATGCCAACGGAGCAGCCAGACTGACAGCACTGCGCATCAAGAAGACCCTGTCTCAGCTCAGTGTGGAGGAGGACGTCAAGATGTGAGCGGCGAAAAGGCGTGCTGGAGACGCACAACCAGACCACCCTCCCATAGGAAACGAACACTAAAGACAGACTGCAAATGAAAACCCTGCCAGTTTTAAAGCCACACTCCAAGTTGTGACGAGGCCTACCTCACCTTTTTAGCCAAAACTACTGAGAATCACCCGTCCCCTCTTGACTTTTCTCGCCCCATCTCCTTTTCTCGCC

Function

symbol description
acvr1b Enables several functions, including ATP binding activity; activin receptor activity, type I; and inhibin binding activity. Contributes to activin binding activity; activin-activated receptor activity; and growth factor binding activity. Involved in several processes, including cell surface receptor signaling pathway; positive regulation of erythrocyte differentiation; and protein phosphorylation. Located in cell surface and cytosol. Is integral component of plasma membrane. Part of activin receptor complex. Implicated in pancreatic cancer. Biomarker of pancreatic cancer.

NR:

description
PREDICTED: activin receptor type-1B-like

GO: NA

KEGG:

id description
K13567 ACVR1B, ALK4; activin receptor type-1B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039801193.1 True 1838 mRNA 0.54 9 21363300 21376234

Neighbor

gene id symbol gene type direction distance location
dnajc22 dnajc22 coding downstream 68163 21291261 ~ 21295137 (-)
ikzf4 LOC103356912,LOC106096427,LOC104956881 coding downstream 72154 21281957 ~ 21291146 (-)
wnt10b wnt10b,LOC102780570 coding downstream 85565 21258261 ~ 21277735 (-)
arf3a arf3,ARF3,arf3a,LOC106921537,LOC102781726,LOC106954774,LOC104956878 coding downstream 107836 21250701 ~ 21255464 (-)
erbb3b LOC103356917 coding downstream 115143 21234266 ~ 21248157 (-)
acvrl1 LOC104932540,LOC104956873,LOC103385089 coding upstream 3133 21379367 ~ 21392760 (-)
ankrd33aa NA coding upstream 19986 21396220 ~ 21403008 (-)
sp5l LOC102777623,LOC102204397,LOC102293226,LOC100709614,LOC104932563,LOC103356902,LOC104956872 coding upstream 98146 21474380 ~ 21477108 (-)
b4galnt1a LOC104956934 coding upstream 203970 21580204 ~ 21606297 (-)
tac3a tac3,LOC103368465 coding upstream 244737 21620971 ~ 21623462 (-)
G51721 NA non-coding downstream 69455 21291146 ~ 21293845 (-)
LOC120559347 NA non-coding downstream 140668 21219967 ~ 21222632 (-)
G51673 NA non-coding downstream 195552 21166722 ~ 21167748 (-)
G51606 NA non-coding downstream 314514 21046049 ~ 21048786 (-)
G51620 NA non-coding downstream 321356 21037082 ~ 21041944 (-)
G51767 NA non-coding upstream 18208 21394442 ~ 21395700 (-)
G51834 NA non-coding upstream 121910 21498144 ~ 21503262 (-)
LOC120559689 NA non-coding upstream 136769 21513003 ~ 21515984 (-)
LOC120559690 NA non-coding upstream 156166 21532400 ~ 21532964 (-)
G51848 NA non-coding upstream 172279 21548513 ~ 21548738 (-)
esyt1a LOC104932417,LOC104956886,LOC103356920 other downstream 146581 21199340 ~ 21216719 (-)
fmnl3 fmnl3 other downstream 164257 21167904 ~ 21199043 (-)
LOC120558386 hoxc10,LOC100690382 other downstream 410782 20820171 ~ 20952518 (-)
LOC120558911 LOC103362803,LOC100693258 other downstream 1547982 19799205 ~ 19815318 (-)
kcnd3 kcnd3,LOC102776651,LOC102303593,LOC100697611,LOC101470631 other downstream 2285519 18945968 ~ 19077781 (-)
si:dkey-151g10.3 wnk3 other upstream 593818 21970052 ~ 22015043 (-)
LOC120559880 LOC104932903,LOC103358260,LOC104967532,LOC107390844 other upstream 846915 22223149 ~ 22229421 (-)
G52226 NA other upstream 1153372 22529606 ~ 22530708 (-)
si:ch211-150o23.3 LOC103367744,LOC101075068 other upstream 1837864 23214098 ~ 23218900 (-)
G52501 eno1,LOC104965722,LOC103151087 other upstream 1932266 23308500 ~ 23319684 (-)

Expression


Co-expression Network