tcf15 (tcf15,LOC104919924,LOC103354327,LOC100694468,LOC102295168)


Basic Information

Item Value
gene id tcf15
gene name tcf15,LOC104919924,LOC103354327,LOC100694468,LOC102295168
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 11878352 ~ 11880620 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039801194.1
ATAAGAGCCTAGTTGAGCAGGTAGTCCTGGTCCATCCCTAAAACAGGCCAGTCCAAAAACTGACTTGTGAAAAGTCGGTCAGCTTTATTATAAAcgtcctttttttccccccgcaGGTGGTTACATGTTGCGTGTGTGCCCTATTGAGATGTAGCATTGGTCCCTGCGTTTGTTGTCGGTCTTAACTACCAGAGGATTTGTGGCCGGGACTAGTATAACTTGGGAAGATGACTTTCGCCATGCTGCGGCCCGTGGCGACACACTTGATCTATTCTGACTTCACCGTCACGTCCGAGGATGATGAAAACCGCAGCGAAAGCGACGGCAGCTCGGAGCAAAGTTACTGTGGCTCCACCAAAAAACGCAGAAGGATTTCGCACCGACTGGAAGGGGAGGCCCCGGTGGTGGTGAAACAGAGGAGCGCAGCTAACGCCAGGGAGAGAGGCAGGACCCAGAGTGTCAACACCGCATTCACAGCTCTCCGGACTCTCATACCCACCGAGCCGGTGGACAGAAAGCTCTCCAAGATTGAAACTCTCCGACTGGCATCCAGCTACATTTCCCATCTGGCCAACGTGCTTCTTCTCGGAGACGGCGGCGCTGATGGACAGCCCTGCCTCGGCGCGGTTCATGCGCGAGAGAGCGGGGCGCAGCAGCCGCGGACCATCTGCACCTTCTGTTTGAGCAACCAGAGAAAAGGGataAAGGATGccaaaaactgtttaaaaatgcGAGGGCTGGGTCCGCTGCGAACGAGACGCTGACTGAAGACCAGTGAATGATTAGCAACCTGAAAATCCTCAAAGACTTTCTCAGGGAAGAGTCAAAGCTGGTGTtagcacaaacactcacaccaAGACACACATGCTGGATCAAATTTTGGAAACCAAGAAGAGACTATTTATACTTGACTGAGAAAATTTAAGCATAAGCCTTTCAAAGATGCAGTGCATTTGTTTGAAACTTAtgagtttttttcctttttttttttttcccactcgaaagtttaaaataaaatatattttatcaaaataaaagctgttaTTTTCCTGCTTCCCAGGTTTTTCCGGTGACAACAAGAAACAGTTTCATGAAGAAAATTCAATGTCAAAATTTGTTTCAGATTGTGTTAATGATTGGGACATTGATGTAAACTAAATGCATGCAGAGTAAAACGATGAAATt

Function

symbol description
tcf15 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in developmental process and regulation of transcription by RNA polymerase II. Is expressed in mesoderm; myotome; and somite. Orthologous to human TCF15 (transcription factor 15).

NR:

description
transcription factor 15-like

GO:

id name namespace
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09070 TCF15, PARAXIS; transcription factor 15

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039801194.1 True 1185 mRNA 0.47 2 11878352 11880620

Neighbor

gene id symbol gene type direction distance location
LOC120558412 NA coding downstream 6891 11865707 ~ 11871461 (-)
slc13a3 slc13a3 coding downstream 14658 11855050 ~ 11863694 (-)
LOC120559814 NA coding downstream 30265 11844711 ~ 11848087 (-)
LOC120558426 LOC102786184,LOC101465378,LOC100693664 coding downstream 36779 11835663 ~ 11841573 (-)
LOC120559301 LOC103366116 coding downstream 53135 11818150 ~ 11825217 (-)
scrt2 scrt2,LOC108249568,LOC102228875,LOC107391295 coding upstream 18198 11898818 ~ 11907613 (-)
slc52a3 slc52a3 coding upstream 59640 11940260 ~ 11945510 (-)
LOC120559253 ube2v1,LOC102081483,LOC108249566,LOC101171992,LOC106536681,LOC107391298 coding upstream 72555 11953175 ~ 11957391 (-)
LOC120559249 ptpn1 coding upstream 105790 11986410 ~ 11999445 (-)
LOC120559362 LOC102786474,LOC103354471 coding upstream 223271 12103891 ~ 12119146 (-)
G48911 NA non-coding downstream 262643 11607970 ~ 11615709 (-)
G48910 ankrd52 non-coding downstream 271738 11605733 ~ 11606614 (-)
G48907 ankrd52 non-coding downstream 277844 11600292 ~ 11600508 (-)
G48886 cs non-coding downstream 299364 11576539 ~ 11578988 (-)
G48903 LOC102783589,LOC107599367 non-coding downstream 305363 11564071 ~ 11572989 (-)
G49024 NA non-coding upstream 122647 12003267 ~ 12063255 (-)
G49084 NA non-coding upstream 239038 12119658 ~ 12121550 (-)
G49092 NA non-coding upstream 260315 12140935 ~ 12141414 (-)
G49112 NA non-coding upstream 266108 12146728 ~ 12147033 (-)
G49118 NA non-coding upstream 331123 12211743 ~ 12213541 (-)
LOC120558961 NA other downstream 370015 11503827 ~ 11508337 (-)
G48697 NA other downstream 1144465 10641405 ~ 10733887 (-)
G48523 NA other downstream 1852527 10024994 ~ 10025825 (-)
hipk1a LOC103359735 other downstream 2093111 9766311 ~ 9785241 (-)
c1qtnf12 fam132a other downstream 2124666 9727874 ~ 9753686 (-)
srxn1 srxn1 other upstream 5345 11885965 ~ 11891139 (-)
peds1 LOC104919928,LOC103354371 other upstream 78759 11959379 ~ 11979035 (-)
G49083 LOC103354491,LOC102226477,LOC108232148 other upstream 246266 12126886 ~ 12128425 (-)
dnmt3ba NA other upstream 266794 12147414 ~ 12169209 (-)
ppdpfa LOC104933328,LOC101073585 other upstream 340114 12220734 ~ 12223028 (-)

Expression


Co-expression Network