irf10 (LOC104919618,LOC103370835)


Basic Information

Item Value
gene id irf10
gene name LOC104919618,LOC103370835
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 15792178 ~ 15798489 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039801222.1
CTTTCGCTTCCAAGAGCACTTAATTTTAGTTACGACTTCAGCGTTGAAGTTTAAGGTGGGAGCGTGATTACTTGGAGCATGCTTCTCTGACATTTGAAGGTTTTGTTCCCTCGAGACACCTGTCTGTGTTGAAGATGGAACCTAAAATGCACATGAAAGAGTGGCTGATAGCTCAGATAGAGAGTGGGAAATATGAAGGACTTCTCTGGGAAGATGATCACAAAACTATGTTCAGGATTCCGTGGAAGCACGCAGCCAAGAAGGACTACAAACAGAGGGAGGACGCAGCTCTCTTTAAGGCCTGGGCTGTATACAAGGGCAAGTACAGGGAGGGGAGGGATAAAGCTGACCCCACCATGTGGAAGACCCGTCTTCGCTGTGCACTCAACAAGAGCACAGACTTTCAGGAGGTCCCTGCACGCAACCAGCTGGACATCAGTGAACCCTATAAAGTCTACCTTATCCAGCACGACAATGGGCCAGCCAGACCTGCAGGTACTGCAGACTCTTTCCAGACAAAGGATCAAGTGATCGTCCAGGCTAAGAGCTCTCCAAGGAGCCCCAGTCTTCTGGAAAAAACGcTTCATTGTCAAAAGGAATCATTTGACGCAAGTAAAGACGTAAAACCGTTTATTGATGATCTGATGAGGGAACACATGTATTGTGAGCTCACAGGACAAAAACCTGCTCCTATAACTTTCCTGAGTCCCACACTTACTATATCAGACTTCCGTATGCAGGTGGTGTTGCTGTACCAGGGCCAGAGGGTCATGAAAGTGGCCACCAGCAGCCCAGATGGGTGCTTCATCCTGCAGGGCCGCGTCCCGTTGGGAAATGAACGGATCTACGGGCCCTGCACTGCCCAGCAGCTCTCCTTCCCCTCCCCAAGCTCTGTATCCCTTCCGTCATGCCTGGCTGAAGCGATGAACCGCCTTCTTTGTCATTTGGAGAGAGGTGTGCTATTATGGGTAGCCCCAGATGGGGTGTTCATCAAGCGGTTCTGCCAGGGCAGGGTGTACTGGAGCGGTCCCATGGCCAAACACACTGACCGACCCAACAAACTGGAGCGAGAAAAGACCTTCAAGCTGCTTGACATACCCACATTTCTCAATGAGCTTCAGAGCTGTTTACAGGGGAAGGGACATACACCTTCTTATGAGATTGAGCTCTGCTTTGGAGAGGAGTATCCAGACCCCAACGTACCTAAAACCAGGAAGCTGATCATGGCGCAGGTGGTGCCCTTGTTTGCAGTGGAACTGCTGCAGAGGTTCAACGTGGAAGAGATTCAGGAGAAGCGGCCAATTCTCACCTCcaacacagagggagagaagatGTAGGAGTACAGGGAATGCTACCCTGCACCAGGGTAGCTATGAACAATATACAAGTAGATTACTGCTTTATTGCTTCCCTTTCATCATCATGAAAGACAGATCAGAGCAAACAATACAGAGGATCTTCAGTGTGAAAATGTATATATGATGAAGAAACAATGGAGGTGTTGCGTTGTATGGAAatatatattgatttttttattctgtcCACCATCTAGCTAGACTGGTAGGAGTTATCAGCTTGTTAAAGCAAACATCTTGATCAACCCAATAAAAGTTTTTGCTACCATA
>XM_039801223.1
CTTTCGCTTCCAAGAGCACTTAATTTTAGTTACGACTTCAGCGTTGAAGTTTAAGGTGGGAGCGTGATTACTTGGAGCATGCTTCTCTGACATTTGAAGGTTTTGTTCCCTCGAGACACCTGTCTGTGTTGAAGATGGAACCTAAAATGCACATGAAAGAGTGGCTGATAGCTCAGATAGAGAGTGGGAAATATGAAGGACTTCTCTGGGAAGATGATCACAAAACTATGTTCAGGATTCCGTGGAAGCACGCAGCCAAGAAGGACTACAAACAGAGGGAGGACGCAGCTCTCTTTAAGGCCTGGGCTGTATACAAGGGCAAGTACAGGGAGGGGAGGGATAAAGCTGACCCCACCATGTGGAAGACCCGTCTTCGCTGTGCACTCAACAAGAGCACAGACTTTCAGGAGGTCCCTGCACGCAACCAGCTGGACATCAGTGAACCCTATAAAGTCTACCTTATCCAGCACGACAATGGGCCAGCCAGACCTGCAGACTCTTTCCAGACAAAGGATCAAGTGATCGTCCAGGCTAAGAGCTCTCCAAGGAGCCCCAGTCTTCTGGAAAAAACGcTTCATTGTCAAAAGGAATCATTTGACGCAAGTAAAGACGTAAAACCGTTTATTGATGATCTGATGAGGGAACACATGTATTGTGAGCTCACAGGACAAAAACCTGCTCCTATAACTTTCCTGAGTCCCACACTTACTATATCAGACTTCCGTATGCAGGTGGTGTTGCTGTACCAGGGCCAGAGGGTCATGAAAGTGGCCACCAGCAGCCCAGATGGGTGCTTCATCCTGCAGGGCCGCGTCCCGTTGGGAAATGAACGGATCTACGGGCCCTGCACTGCCCAGCAGCTCTCCTTCCCCTCCCCAAGCTCTGTATCCCTTCCGTCATGCCTGGCTGAAGCGATGAACCGCCTTCTTTGTCATTTGGAGAGAGGTGTGCTATTATGGGTAGCCCCAGATGGGGTGTTCATCAAGCGGTTCTGCCAGGGCAGGGTGTACTGGAGCGGTCCCATGGCCAAACACACTGACCGACCCAACAAACTGGAGCGAGAAAAGACCTTCAAGCTGCTTGACATACCCACATTTCTCAATGAGCTTCAGAGCTGTTTACAGGGGAAGGGACATACACCTTCTTATGAGATTGAGCTCTGCTTTGGAGAGGAGTATCCAGACCCCAACGTACCTAAAACCAGGAAGCTGATCATGGCGCAGGTGGTGCCCTTGTTTGCAGTGGAACTGCTGCAGAGGTTCAACGTGGAAGAGATTCAGGAGAAGCGGCCAATTCTCACCTCcaacacagagggagagaagatGTAGGAGTACAGGGAATGCTACCCTGCACCAGGGTAGCTATGAACAATATACAAGTAGATTACTGCTTTATTGCTTCCCTTTCATCATCATGAAAGACAGATCAGAGCAAACAATACAGAGGATCTTCAGTGTGAAAATGTATATATGATGAAGAAACAATGGAGGTGTTGCGTTGTATGGAAatatatattgatttttttattctgtcCACCATCTAGCTAGACTGGTAGGAGTTATCAGCTTGTTAAAGCAAACATCTTGATCAACCCAATAAAAGTTTTTGCTACCATA

Function

NR:

description
PREDICTED: interferon regulatory factor 4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039801222.1 True 1625 mRNA 0.48 9 15792178 15798489
XM_039801223.1 False 1616 mRNA 0.48 9 15792178 15798489

Neighbor

gene id symbol gene type direction distance location
LOC120559871 LOC104919620,LOC103370834 coding downstream 34970 15741216 ~ 15757208 (-)
cdh26.1 NA coding downstream 53636 15727200 ~ 15738542 (-)
LOC120559538 NA coding downstream 67998 15715619 ~ 15724180 (-)
LOC120558694 taf4 coding downstream 110463 15667178 ~ 15681715 (-)
ogfr NA coding downstream 690278 15095189 ~ 15101900 (-)
bmp7b LOC103370837,LOC104958733 coding upstream 1451 15799940 ~ 15823806 (-)
tnnc1a tnnc1,LOC107391089,LOC103147776,LOC100708228,LOC108232086,LOC105932306,LOC102236084 coding upstream 64533 15863022 ~ 15867186 (-)
vgll4a LOC104958739,LOC104940214,LOC103368777 coding upstream 112109 15910598 ~ 15920543 (-)
raf1a raf1 coding upstream 139340 15937829 ~ 15951030 (-)
gp9 NA coding upstream 165068 15963557 ~ 15964905 (-)
G50104 NA non-coding downstream 103751 15685011 ~ 15688427 (-)
G50101 NA non-coding downstream 127070 15664770 ~ 15665108 (-)
G50006 NA non-coding downstream 470257 15321709 ~ 15321921 (-)
G50005 NA non-coding downstream 472333 15319406 ~ 15319845 (-)
G50004 NA non-coding downstream 489541 15302398 ~ 15302637 (-)
G50136 NA non-coding upstream 80845 15879334 ~ 15896000 (-)
G50138 LOC104940213,LOC103368778,LOC102235665 non-coding upstream 88401 15886890 ~ 15890117 (-)
G50153 LOC101174347 non-coding upstream 131632 15930121 ~ 15933298 (-)
G50143 NA non-coding upstream 154041 15952530 ~ 15956672 (-)
G50230 NA non-coding upstream 487832 16286321 ~ 16379623 (-)
G49845 naca,LOC107737655,LOC106571941 other downstream 938361 14845338 ~ 14853817 (-)
map3k12 LOC104930685,LOC103358642 other downstream 1240620 14539788 ~ 14551558 (-)
G49766 LOC103358643,LOC101487433,LOC103144045,LOC101072611,LOC101159823,LOC107094832 other downstream 1257573 14532124 ~ 14534605 (-)
LOC120558545 LOC104942567,LOC103358644 other downstream 1359184 14416336 ~ 14432994 (-)
LOC120558710 NA other downstream 1646956 14140380 ~ 14145222 (-)
G50217 fgd3,LOC104966710 other upstream 482555 16281044 ~ 16283856 (-)
LOC120559328 smim4 other upstream 1308345 17106834 ~ 17115047 (-)
G50712 birc7 other upstream 1889626 17688115 ~ 17689760 (-)
zbtb46 zbtb46,LOC102795869 other upstream 2036591 17835080 ~ 17895082 (-)
samd10b samd10,LOC107570869 other upstream 2175804 17974293 ~ 18101572 (-)

Expression


Co-expression Network