wdr46 (wdr46)


Basic Information

Item Value
gene id wdr46
gene name wdr46
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 16649897 ~ 16658802 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039801227.1
ATGGCGTCTCCCGGCGAGGCAGCAGTGGGTAATACACACGTGGGGGAAAAGAAGAAGCCCACATCTCGTTACTGGGAGGAGCCGCAGGAGGATGGGAAACATGAAAACAAAGTGGGTGAAGACGGAGAACAGACTGAACGATCTTTGGAAAAGAAGACGCGACAGACTCATAAAGCAAAGAAAAGGAAGCAAGAAGAGGATCAAGGAGATGGAAATAAGTTTATATCAGGGAAATCTGACCCTTTCCCTGGGCCTGCTCCTATTCCTGAAGACAGGTTGCAGAAGTTCAAGAGGAGAGATAAAACTAAAAAGCCTCGCCGCCAGCATTACAAGCTGAAAGACATGATTGCTAGCTCGGAAGAAGCTTCAGAAATGGCCCAGAAACAAGCTGCTCGGTTGGACCTCCTACTCCCAGAGGATGCAGGGTTTCTAGAAGGAGATGAAGATGAGGACACGTGTACAATCTCTCAGGAAGATATTGCAGATGTTGTGGATATAACATCTGCGACAAAGtaTTTTGATCTGAAATTGTCTCAGTTTGGACCATATCGAGTAGATTACAGCAAGACTGGACGTCAACTGCTGCTTGGTGGGAGGAGAGGGCATGTTGCCTGTATAGACTGGCAGTCCAAACAGCTAATGTGTGAGATAAACGTGATGGAGTCTGTCAATGATGTAAAGTGGCTCCATAGTGAGGCCATGTATGCAGTGGCTCAGAAGAAGTGGCTGCATATCTATGACTCCAATGGAATAGAGCTACACTGCATCCGCAAATTCAATGATGTCCTTCGTATGCAGTTCCTCCCTTACCACTTTTTGCTAGCAACAGCGAGTGCTACAAGTTTCCTGCAGTACCTGGATGTGTCAGTGGGAAAGGAGGTGGCAGCCATTTGCACCAAGACTGGCCGGCTTGATGTGATGTGCCAGAACCCTCATAATGCCGTCATCCACCTCGGCCACTCCAACGGCACGGTCACCCTCTGGTCTCCCAACCAGAAAGAAGCCCTTGTCAAGATGCTCTGTCACCAGGGCGGCGTGCGCTCTGTCACTGTAGACAAGACGGGCACATATATGGTGACATCTGGTATGGATAAAAAGCTGAAGGTATATGACATTAGAGCCTTCAAGCCCCTCAAGTCCTACTTCCTCCCTGCTGGAGCTTCCTGTTTGTCTCTGAGCCAGAGGGGTCTGCTGTCTGCAGCCACAGGGGACATTGTTCAGGTGTACAGAGATGTGTGGACCACTCCAGTGAGTAAACCCTACATGGCTCACAGAGTTCAAAGAACTATTTGGGGGATGAACTTCTGTCCCTTTGAGGATGTCCTCGGGGTGGGTCACGGAGAGGGTTTCACCAGCATGCTCATACCAGGTGCTGGAGAGCCTAACTTCGACGGACTGGATGCAAATCCATACAGGAGTGCAAAACAGAGGCAGGAGTGGGAGGTTAAAGCCCTGCTGGAGAAGATCCAGCCAGAGCTCATCAGCCTCGACCCCACCGAGCTGGGACAGGTTGACCGCGCCACGTTTGAGCAAAGGCACCAAGACCGGGTCAAAGCTCTGGGCTTTGACCCACTTGCCAAAGAAAAATTCATTCCCAAGTACAAGAAAAAGGGTCGTAGTTCAACTGGCAGTGTTGAAAGGCGCAAGAGACAAGTGGCTCATGAGGACCAGAGGGATGTAATCAGGAAAACTGCGGAGGACAAAATGAAGattgaaaaagagagaaagaagagggagaaaaaggagGCAGTGTTATCTAGCCAGAGATCTGCTCTGGACAGATTCAAAAAATAGAAAAGGAGCCCCCTTTGTGCAGCCCAAAACCCAGTGACATTCTGTGGGAGTGACCTTTTGAACTTCAAATAAAGGACACATTTTTTGGACACATTActccactgggaaaaaaacCGACTGCAAAAATTCTGGATGTAGCCGGTTAATAAAGAATCATTCTCATGGGTGGCAGATCATCTGTAATCAATGTTGAGTGCAGTGAAAGGACAGATCTATTTAATGTCTGTAGCCTGAAGCATTCCTGTCTACATGGGAGGATAATGTGAGGTGCCATGGCTTGTATAAGTGTCATCCAGAATTTGTGTtgagttgtattttttttctctacttATAAACCAACTTTTCACAAATTTTTTAGTGCTTTGGTGGCTGAACTGACTGAGCGTCAAATGTTTTCTATAAATATGTtctaaaataaacataatgccAAGCCTCGGAA

Function

symbol description
wdr46 Predicted to be involved in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to be located in nucleus. Predicted to be part of small-subunit processome. Predicted to be active in nucleolus. Is expressed in several structures, including alar plate midbrain region; digestive system; immature eye; midbrain; and segmental plate. Orthologous to human WDR46 (WD repeat domain 46).

NR:

description
WD repeat-containing protein 46

GO: NA

KEGG:

id description
K14768 UTP7, WDR46; U3 small nucleolar RNA-associated protein 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039801227.1 True 2233 mRNA 0.47 14 16649897 16658802

Neighbor

gene id symbol gene type direction distance location
nr2c2 nr2c2 coding downstream 6027 16630572 ~ 16643870 (-)
mrps25 mrps25 coding downstream 21479 16626127 ~ 16628418 (-)
tmcc1a tmcc1,LOC102793771 coding downstream 72811 16528518 ~ 16577086 (-)
plxnd1 plxnd1 coding downstream 123245 16460250 ~ 16526652 (-)
mbd4 mbd4 coding downstream 220332 16426070 ~ 16429565 (-)
LOC120559001 prrt3 coding upstream 26505 16685307 ~ 16706539 (-)
ogg1 ogg1 coding upstream 47349 16706151 ~ 16709769 (-)
LOC120559488 LOC104953760,LOC102798642,LOC101474932 coding upstream 67175 16725977 ~ 16730653 (-)
LOC120559825 LOC103362962 coding upstream 87577 16746379 ~ 16789963 (-)
LOC120559618 magi1,LOC104927908,LOC103368435,LOC102193390,LOC102291253 coding upstream 164972 16823774 ~ 16916382 (-)
G50371 NA non-coding downstream 68915 16580076 ~ 16580982 (-)
G50278 NA non-coding downstream 231284 16416921 ~ 16418613 (-)
G50230 NA non-coding downstream 270274 16286321 ~ 16379623 (-)
G50143 NA non-coding downstream 693225 15952530 ~ 15956672 (-)
G50153 LOC101174347 non-coding downstream 716599 15930121 ~ 15933298 (-)
G50378 NA non-coding upstream 2196 16660998 ~ 16663045 (-)
G50382 NA non-coding upstream 7248 16666050 ~ 16679676 (-)
G50389 qars non-coding upstream 55259 16714061 ~ 16714748 (-)
G50443 NA non-coding upstream 285969 16944771 ~ 16944972 (-)
G50476 NA non-coding upstream 405016 17063818 ~ 17064746 (-)
G50217 fgd3,LOC104966710 other downstream 366041 16281044 ~ 16283856 (-)
G49845 naca,LOC107737655,LOC106571941 other downstream 1796080 14845338 ~ 14853817 (-)
map3k12 LOC104930685,LOC103358642 other downstream 2098339 14539788 ~ 14551558 (-)
G49766 LOC103358643,LOC101487433,LOC103144045,LOC101072611,LOC101159823,LOC107094832 other downstream 2115292 14532124 ~ 14534605 (-)
LOC120558545 LOC104942567,LOC103358644 other downstream 2216903 14416336 ~ 14432994 (-)
LOC120559328 smim4 other upstream 448032 17106834 ~ 17115047 (-)
G50712 birc7 other upstream 1029313 17688115 ~ 17689760 (-)
zbtb46 zbtb46,LOC102795869 other upstream 1176278 17835080 ~ 17895082 (-)
samd10b samd10,LOC107570869 other upstream 1315491 17974293 ~ 18101572 (-)
LOC120558627 LOC103370864,LOC104963599,LOC101472162 other upstream 2215953 18874755 ~ 18886895 (-)

Expression


Co-expression Network