ogg1 (ogg1)


Basic Information

Item Value
gene id ogg1
gene name ogg1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 16706151 ~ 16709769 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039801228.1
TACGCATTAAGTGATTTGGGATCATTATTAACATGAAGTTAGGACTATAACCACGTCTTATTTGTACGAAATAACATTTCGAATTACAAATATCTAAACTTTGCACGTTTTCTTTTCAAATATGCGCAGTTTTGCATCACAGTGTAAGGTCTTTGTTGTCCATCATCATTATCGACGCTAGCTAAAACAACTCCGCGAAAGTTATTTACACTGGCTGTTGTAAACATGAACTCATAGCATGAACTGTACTTAGAAGTTGTAGCTTCCCGTTTACATTAAGGTGTAGGGTTTGTTTTACGCTGCAACATCTACTCTAATCACACTAAGATGAGTTTTATAATGTCGGGACACTGTGGTTGGTCAGTGTAACGTTACGCTTGTTTTAGCTAACCTCTGAACAgtcagcagagtagctaactgTTAGCATCAAAACAGGTAAGTTATGGCCAAACATGCGGTACTGTCATCGGGGTCAAAAATGTGGAGATCTCTGGCCTGTGCAAAGTCGGAGCTGAGTCTTGATCTCACTCTTGCATGTGGACAATCTTTCCGATGGAGAGAAACCGCAGAAGGCCACTGGACCGGAGTGATGGGAGGACGAATTTGGACTCTGACTCAAACAGGTGACATTCTTTGGTACCACGTTTACAAAAACCATGAACAAAACAGGGAGGTGGGTGGAAGTGACAGGAAGAGGAGGGCTGGTGTTTCTCTACAAATGGAAAACAAGTCAGAGAAGAGGATCAAAGGAGCTTtgaagaaggaagaggaggagccgGTGGCCTTGACTTCAGTGCAGGACactgaggaggaagaagagatgTTGAGAGACTACTTCCAGCTGAATGTGAAGCTGCTGGATCTCTACAATGAATGGGGAGTAGCAGACCCTCACTTTAAGTGCATTGCAGACATCTTCAcagGAGTGCGCATGCTGCGCCAGGACCCCACTGAATGCCTGTTTTCCTTCATTTGCACCTCCAACAACCACATCTCTCGTATCCAGGGCATGGTGGAGAGGCTGTGTCAGGCTCTGGGTGCCCCGCTGTGCCAACTGGATGAAACCTCCTACTACAACTTTCCTTCCCTGTCTGCGCTTGCAGACAACAGTGTAGAGGCGTGTCTCAGGGATCTCGGTTTTGGATACAGGGCTCGGTTCCTTCAGCAGAGCGCGAAGCAGATTTTGGACACCCATGGGCTCCAGTGGCTTGAAGGTCTACGCAGTGTCCCATATCTGCTGGCCCGTGATGCTCTGCGTACTCTCCCTGGTGTAGGCACCAAGGTGGCAGACTGTGTATGCCTGATGTCCCTGGATAAGGCAGAGGCCGTACCCATAGACACACATGTGTGGCAGATTGCTAAACGTGACTACAACTATGCTTCTGGCAACGGACAAAAGAGCATCACAGCTAAACTTCACCGAGATATTGGGGATTTTTTCAGAAAACTGTGGGGTCCTTATGCTGGTTGGGCACAGTCGGTGTTGTTTTGTGCTGATCTCAAGAAGTTCCAAAAGCTGAAAGAAATGCCACATCTGAAACGgccaaagaaagaggaaaatgaTGAAGAAGAACTGAGGGTGGCatgcaagaaaacaaaaattaagAGAGAAGAAAATGGAACTGTGAAGAAGATGAAAACCAAGTCAGCACATCACAAGAAAGCAAAGACTTCTGAATGAGAGAGTTATATAAGGTAAACAAGCTTCTTACATCAGGACTCACATCAGATCACAATACCACATTTTTTCTCACACACTTTGGCTAACTTCATTTTAAAAAACCTAATGgaattaaatatataaactgtatttttgtCATGGTATAAAACAAATTATTGTAAGAAGGTTCTTAGggttttcatttacatgttttttacCTTGACCTTTTCTATGTTTACTTTCCTATGAGTCCACTACGACAGCACACTGGTGgcctttgttttggtttttacaataaagacaaaataaCTTA
>XM_039801229.1
TTACGCATTAAGTGATTTGGGATCATTATTAACATGAAGTTAGGACTATAACCACGTCTTATTTGTACGAAATAACATTTCGAATTACAAATATCTAAACTTTGCACGTTTTCTTTTCAAATATGCGCAGTTTTGCATCACAGTGTAAGGTCTTTGTTGTCCATCATCATTATCGACGCTAGCTAAAACAACTCCGCGAAAGTTATTTACACTGGCTGTTGTAAACATGAACTCATAGCATGAACTGTACTTAGAAGTTGTAGCTTCCCGTTTACATTAAGGTGTAGGGTTTGTTTTACGCTGCAACATCTACTCTAATCACACTAAGATGAGTTTTATAATGTCGGGACACTGTGGTTGGTCAGTGTAACGTTACGCTTGTTTTAGCTAACCTCTGAACAgtcagcagagtagctaactgTTAGCATCAAAACAGGTAAGTTATGGCCAAACATGCGGTACTGTCATCGGGGTCAAAAATGTGGAGATCTCTGGCCTGTGCAAAGTCGGAGCTGAGTCTTGATCTCACTCTTGCATGTGGACAATCTTTCCGATGGAGAGAAACCGCAGAAGGCCACTGGACCGGAGTGATGGGAGGACGAATTTGGACTCTGACTCAAACAGGTGACATTCTTTGGTACCACGTTTACAAAAACCATGAACAAAACAGGGAGGTGGGTGGAAGTGACAGGAAGAGGAGGGCTGGTGTTTCTCTACAAATGGAAAACAAGTCAGAGAAGAGGATCAAAGGAGCTTtgaagaaggaagaggaggagccgGTGGCCTTGACTTCAGTGCAGGACactgaggaggaagaagagatgTTGAGAGACTACTTCCAGCTGAATGTGAAGCTGCTGGATCTCTACAATGAATGGGGAGTAGCAGACCCTCACTTTAAGTGCATTGCAGACATCTTCAcagGAGTGCGCATGCTGCGCCAGGACCCCACTGAATGCCTGTTTTCCTTCATTTGCACCTCCAACAACCACATCTCTCGTATCCAGGGCATGGTGGAGAGGCTGTGTCAGGCTCTGGGTGCCCCGCTGTGCCAACTGGATGAAACCTCCTACTACAACTTTCCTTCCCTGTCTGCGCTTGCAGACAACAGTGTAGAGGCGTGTCTCAGGGATCTCGGTTTTGGATACAGGGCTCGGTTCCTTCAGCAGAGCGCGAAGCAGATTTTGGACACCCATGGGCTCCAGTGGCTTGAAGGTCTACGCAGTGTCCCATATCTGCTGGCCCGTGATGCTCTGCGTACTCTCCCTGGTGTAGGCACCAAGGTGGCAGACTGTGTATGCCTGATGTCCCTGGATAAGGCAGAGGCCGTACCCATAGACACACATGTGTGGCAGATTGCTAAACGTGACTACAACTATGCTTCTGGCAACGGACAAAAGAGCATCACAGCTAAACTTCACCGAGATATTGGTGTTGTTTTGTGCTGATCTCAAGAAGTTCCAAAAGCTGAAAGAAATGCCACATCTGAAACGgccaaagaaagaggaaaatgaTGAAGAAGAACTGAGGGTGGCatgcaagaaaacaaaaattaagAGAGAAGAAAATGGAACTGT

Function

symbol description
ogg1 Predicted to enable 8-oxo-7,8-dihydroguanine DNA N-glycosylase activity. Acts upstream of or within animal organ development; negative regulation of neuron apoptotic process; and regulation of neuron projection development. Predicted to be active in nucleus. Is expressed in several structures, including anterior lateral plate mesoderm; anterior presumptive neural plate; nervous system; pericardial region; and pronephric duct. Human ortholog(s) of this gene implicated in several diseases, including Graves' disease; angiomyolipoma; carcinoma (multiple); eye disease (multiple); and reproductive organ cancer (multiple). Orthologous to human OGG1 (8-oxoguanine DNA glycosylase).

NR:

description
N-glycosylase/DNA lyase

GO:

id name namespace
GO:0006284 base-excision repair biological_process
GO:0006289 nucleotide-excision repair biological_process
GO:0003684 damaged DNA binding molecular_function
GO:0008534 oxidized purine nucleobase lesion DNA N-glycosylase activity molecular_function

KEGG:

id description
K03660 OGG1; N-glycosylase/DNA lyase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039801228.1 True 1973 mRNA 0.44 7 16706151 16709768
XM_039801229.1 False 1577 mRNA 0.46 6 16706498 16709769

Neighbor

gene id symbol gene type direction distance location
wdr46 wdr46 coding downstream 47349 16649897 ~ 16658802 (-)
nr2c2 nr2c2 coding downstream 62281 16630572 ~ 16643870 (-)
mrps25 mrps25 coding downstream 77733 16626127 ~ 16628418 (-)
tmcc1a tmcc1,LOC102793771 coding downstream 129065 16528518 ~ 16577086 (-)
plxnd1 plxnd1 coding downstream 179499 16460250 ~ 16526652 (-)
LOC120559488 LOC104953760,LOC102798642,LOC101474932 coding upstream 16208 16725977 ~ 16730653 (-)
LOC120559825 LOC103362962 coding upstream 36610 16746379 ~ 16789963 (-)
LOC120559618 magi1,LOC104927908,LOC103368435,LOC102193390,LOC102291253 coding upstream 114005 16823774 ~ 16916382 (-)
fmodb fmod coding upstream 245116 16954885 ~ 16959681 (-)
LOC120559259 LOC104927913,LOC103374533,LOC104956322,LOC106571864 coding upstream 251729 16961498 ~ 16972293 (-)
G50382 NA non-coding downstream 26475 16666050 ~ 16679676 (-)
G50378 NA non-coding downstream 43106 16660998 ~ 16663045 (-)
G50371 NA non-coding downstream 125169 16580076 ~ 16580982 (-)
G50278 NA non-coding downstream 287538 16416921 ~ 16418613 (-)
G50230 NA non-coding downstream 326528 16286321 ~ 16379623 (-)
G50389 qars non-coding upstream 4292 16714061 ~ 16714748 (-)
G50443 NA non-coding upstream 235002 16944771 ~ 16944972 (-)
G50476 NA non-coding upstream 354049 17063818 ~ 17064746 (-)
G50477 NA non-coding upstream 355228 17064997 ~ 17065274 (-)
G50483 rbm39 non-coding upstream 361353 17071122 ~ 17074733 (-)
G50217 fgd3,LOC104966710 other downstream 422295 16281044 ~ 16283856 (-)
G49845 naca,LOC107737655,LOC106571941 other downstream 1852334 14845338 ~ 14853817 (-)
map3k12 LOC104930685,LOC103358642 other downstream 2154593 14539788 ~ 14551558 (-)
G49766 LOC103358643,LOC101487433,LOC103144045,LOC101072611,LOC101159823,LOC107094832 other downstream 2171546 14532124 ~ 14534605 (-)
LOC120558545 LOC104942567,LOC103358644 other downstream 2273157 14416336 ~ 14432994 (-)
LOC120559328 smim4 other upstream 397065 17106834 ~ 17115047 (-)
G50712 birc7 other upstream 978346 17688115 ~ 17689760 (-)
zbtb46 zbtb46,LOC102795869 other upstream 1125311 17835080 ~ 17895082 (-)
samd10b samd10,LOC107570869 other upstream 1264524 17974293 ~ 18101572 (-)
LOC120558627 LOC103370864,LOC104963599,LOC101472162 other upstream 2164986 18874755 ~ 18886895 (-)

Expression


Co-expression Network