LOC120559538


Basic Information

Item Value
gene id LOC120559538
gene name NA
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 15715619 ~ 15724180 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039801284.1
CTTCCATTCAGGTGCGTCCGAGGAATAGTCGTCTAAGAGACTAACTTCTATAACGGCACATGATTTGGATATACTATTGAAACAATGCACCTCAGTCTTCTCCTGATGCTGTGTTTGGGAGTCCACATATCATCTTCAGACATATTGAAGCGACAAAAAAGAAACTGGATCATTGATTCCTTTAGCATTGACGAAGACTATAAAGGAGTTTTCCCATACACACTGGGCATAATTTCAGTCAGGAACGAGTTTGTCTCTTTCAAGATACGTGGGCACGGTGCTGATGAAGAACCCAAAGGCACATTACAAATCGACAAAATCACAGGGGAGCTTACTGTCCATGGCCCTGTTGACTATGAGAAATTCAAAGTTTTAAAACTAGTATGTACGGcatatgacaaagaaaatcaTGTAATAGACACAAACCTGGGCATCGAGATAACGATTAATGACGCAAATGACAACCCTCCAAAATTTGACCATGACATGTACAACATCAGGATACCGGAGGCAACATCGCAAGGCACTGCAGTGATTACCGTTAAGGCAAGCGATGTTGACACCAAAGAGAACAATAGattatttgattttaaaatagTCTCAGATCCTCCACCATATGACCATGACCTGGAGTTCTACTTGACCCAGGTCTCTGAAACGGCAACCATTTCATTTAAAGGGTGTCTGAACCATGAGAAAGCAGAGAAATACACCATTATAGTGGAGGCCAAAGACCGTGGAGAAAAAATACAGCTCTCCAGTTCCTGCACCGTCATAATCCACATAGAAGATGGAAATAACCATCTTCCCTTGATAACAGGACATACAGGTCTAGGAAGAGTgaaagaaggagaggaaaatGTGCTTGTGTCACGTCTGCAAGTTACAGACAAAGATAACAAAGGTACAGCGGCCTGGAGAGCCAAATATCGAATCCAAGAAGATGCAAACAACAACTTCAGAATCACTACTGATCCTGAGACAAACGAAGGCCTACTGTATGTGGAAAAGcaTCTGGACTATGAAGACAGTCCTCTGAAGAACGTGACTATCAGTGTAGAGAATGAGATCCCCTCTGGCGTATGCAAGGTGGTGAGGCGCCACACCACTGGTCTTTGGGAAGTGGTCACTATTGACAGTGCCACTACTGGAGGTGCCACTATTGGTGGTGCGACtgggacagagacacacagtctGTCCACCTGCCTAGTGACAGTGATTGTGGAGAATGTCAATGAGCCTCCGATCTTTGACGTACCTAACAAAAAAGTTACGTTGGTTGAGAATGTCAAGGTGGGTCACTACCTGGTGAAATTTACAGCTAGAGATCCTGACATTACCAGTGCCAACACACTTGTatacAGAAAAGGAAACGATCCAGCTGATTGGGTTACAGTGGACCCCAAGACTGGAAAAATAACCACATCAAAGATCATAGACCGGGAGTCATCCTTTGTGAAAGACAATATATATAACGTCACAATATGTGCTGTTGACCATGGTCAACCTCCAACGACAGGCACAGCAACCCTGCACATCTATATTACCGATGAGAACGACAATGCTCCATCCCTGGCTGTAAACACAGTTGACATGTGCCAATATGATGGACTCTCTCTGGCCAACATCGTTGCCTCGGACCCGGATGAAGAGCCCTATGGTGGACCTCTCACCTTTGAGCTCCAGGAAAAAGAGAAGGGCAAGTGGAAGCTTGACACTAGACAAGAGTATTCAGTCAACCTGGTGAAAGAGCCAACAGTTCCTTCTGGACAATATGAGTTGTTGCTGGAGGTGTTTGACCATCAAGGCTTGAAAGCTGTACACAACCTGTCAGTTACTGTGTGTGACTGCGTAGACACAGCAACCCCAAACTGTCGCATCCGCAAAGCTACTGGCTCCGCAGTAAAAGGAGGAGTCTTTGCAGTAATTCTTTTTGCCATGCTACTGCTTGCAGGTTTGTTTCTTTTGGCTTTTCTGGTGTCATGTAAGAAAAAGAGCATCGCAATCCCAGATGACGATTCAGGACAACAACTCATGAACTGTAACACTGAGAAACTGGGAACTGACTGCAAAGTGGTGTTTGAGCCACTAGACAAAGGACACAATCAGAACGAGGAACAAAGCCAAACAAAGTCTCAAGTTGCGGTGAAGCGATTTATTGCTCAGTCAACAACGGATGCGGTAGTGTCCCAGTCACAGCAGGCCATGTCCCAAACTGAAATCCTACAACAGCGAAGGGACTATTTGTATCAGTTGACCAGTGACTCAACAATGGAACAAAACTTTTCACGTGGGAACTCTGTGCGTTGGTCAATGGGTGCATCATCAACCACGAGAACGAGAAACCAGCACAGGAACTCTATGCGTGGGGCTGGACACAGACAACAATATTCTGCAAATCAAGAGAACGGTGTAATCCAACGTACGATTCTGCTCAAATCACTTAAAAGGATGCTGTACAAGCTGCAGGCACCAGGAGAGGAGCTGGGTGATTATGCTCCTCATGTGTATGCTGAGGAGGGAGACATGAAGACCGATTTTGAGCTTGATGCCATCTCCATCCCTGATATCTCCTTTGACCCAGACTTGGACATGGACCTGGGTTTCAAATTCAATACTCTGGCCTCAATCTGCATGTCTAGTGAAACACTGCCTACAGTACAAAACCTCCTCCCCAAAGACTATCAGAGACAGCAACTCTGATCCAAGAAAGCCTATAACACTCATAAGTTAATCATCCTAAATCATAAATATTACCTACATATGCTATAAGGTGCTTGTGGATAACCTTTGTGGTGACTCACAGCAAGTTATGCTACATTTGGCTACACTTGAAGGATTCATTTATCTTCTCTAGACTCTTCATCAGTCAATGCTTAGTTAGCACCAGGGACACAGTTCACAGCTATTCATAGTTTCCACTATTCCACTATTCATAAGTCATGTTACACAAACCTTACCATTAAGAGTCTCTACTTTGTGACAGATGAAAAACTAAAGAAGGAAAACTGTTTAGTTAGTTAATTAGTTTGGGGATTGGCCAGTGTTACCTTCATttcaataaaatatgttttgtatgtttctaTTATTTACAGCACAACTACCTTTCTTGACTGAGACTATTTTTGGAGGTTCAGAGGACATGTTTACTCTTTCTTCTCTTATGCAAGCAGTGTTGATGGTGGATAGGGAATTAACACTGATTCTCAAGGAATGGAAAGCTTGAACTGGTGTCTGTAATAGTTTTAACAAATGGAATTATTGAACTAAATAGGAAAAATCTTGAGCATCTCTACCACAATACCTGAAGAAAAATTGAATGTATGTAAATATAGATTTTCTTTCATGGGTTTATGATGATCACTGTGTGTTCAAAGTCAGATGCTTAGGTTAGGATAGTTTTAATAGGTTGACTTTGCACATCATAATGCAACATGGTGGGGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039801284.1 True 3445 mRNA 0.43 18 15715619 15724180

Neighbor

gene id symbol gene type direction distance location
LOC120558694 taf4 coding downstream 33904 15667178 ~ 15681715 (-)
ogfr NA coding downstream 613719 15095189 ~ 15101900 (-)
col9a3 NA coding downstream 621581 15076829 ~ 15094038 (-)
zgc:113278 LOC104951675,LOC103357347,LOC102293950,LOC100706617,LOC102213464 coding downstream 704624 15001961 ~ 15010995 (-)
LOC120559456 ncoa3,LOC104951720,LOC104919659,LOC100705914,LOC103373047,LOC102789026 coding downstream 723729 14926288 ~ 14991890 (-)
cdh26.1 NA coding upstream 3020 15727200 ~ 15738542 (-)
LOC120559871 LOC104919620,LOC103370834 coding upstream 17036 15741216 ~ 15757208 (-)
irf10 LOC104919618,LOC103370835 coding upstream 67998 15792178 ~ 15798489 (-)
bmp7b LOC103370837,LOC104958733 coding upstream 75760 15799940 ~ 15823806 (-)
tnnc1a tnnc1,LOC107391089,LOC103147776,LOC100708228,LOC108232086,LOC105932306,LOC102236084 coding upstream 138842 15863022 ~ 15867186 (-)
G50104 NA non-coding downstream 27192 15685011 ~ 15688427 (-)
G50101 NA non-coding downstream 50511 15664770 ~ 15665108 (-)
G50006 NA non-coding downstream 393698 15321709 ~ 15321921 (-)
G50005 NA non-coding downstream 395774 15319406 ~ 15319845 (-)
G50004 NA non-coding downstream 412982 15302398 ~ 15302637 (-)
G50136 NA non-coding upstream 155154 15879334 ~ 15896000 (-)
G50138 LOC104940213,LOC103368778,LOC102235665 non-coding upstream 162710 15886890 ~ 15890117 (-)
G50153 LOC101174347 non-coding upstream 205941 15930121 ~ 15933298 (-)
G50143 NA non-coding upstream 228350 15952530 ~ 15956672 (-)
G50230 NA non-coding upstream 562141 16286321 ~ 16379623 (-)
G49845 naca,LOC107737655,LOC106571941 other downstream 861802 14845338 ~ 14853817 (-)
map3k12 LOC104930685,LOC103358642 other downstream 1164061 14539788 ~ 14551558 (-)
G49766 LOC103358643,LOC101487433,LOC103144045,LOC101072611,LOC101159823,LOC107094832 other downstream 1181014 14532124 ~ 14534605 (-)
LOC120558545 LOC104942567,LOC103358644 other downstream 1282625 14416336 ~ 14432994 (-)
LOC120558710 NA other downstream 1570397 14140380 ~ 14145222 (-)
G50217 fgd3,LOC104966710 other upstream 556864 16281044 ~ 16283856 (-)
LOC120559328 smim4 other upstream 1382654 17106834 ~ 17115047 (-)
G50712 birc7 other upstream 1963935 17688115 ~ 17689760 (-)
zbtb46 zbtb46,LOC102795869 other upstream 2110900 17835080 ~ 17895082 (-)
samd10b samd10,LOC107570869 other upstream 2250113 17974293 ~ 18101572 (-)

Expression


Co-expression Network