ormdl2 (ormdl2,LOC101074775,LOC101464341)


Basic Information

Item Value
gene id ormdl2
gene name ormdl2,LOC101074775,LOC101464341
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 11746307 ~ 11750609 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039801330.1
CTACTGCTTGGAAAAAGCAAGAACTTTAAAGAAGAACAATCATCAcatcaatcaaatcaaaataaGTATGAATGTGGGCGTAGCTCACAGTGAGGTGAACCCCAACACGAGGGTGATGAACAGCAGAGGAATATGGCTCACCTACCTGCTGCTGACCGTCGTGTTGCACATCGTCCTGCTCAGCATTCCTTTCTTCACTGTGCCGCTCGTCTGGACTCTTACAAACGTCCTCCACAACCTGGTGATGTACCTGTTTCTACACACAGTGAAGGGCACTCCCTTTGAGACACCAGACCAAGGCAAAGCTCGTCTGCTCACACACTGGGAACAGATGGACTACGGTGTCCAGTTCACATCTTCACGCAAATTCCTCACTATCTCACCAATTGTTCTgTATATTCTTGCCAGTTTCTACACAAAATACGATCCCACACATTTCCTAATCAACACGAGCTCCCTCCTTAGTGTCCTCCTCCCAAAGTTGCCTCAATTTCACGGAGTACGGATATTTGGGATCAACAAATACTGATAGAACTGACTGAACTTTGGATTTTAACCACCAAACACTGGACTTCTAGTTTTCCGTTTCTGCTGAACTATTTTATGACTAGAGGTTGAGGAGAAGAGAACCACTTGGATTTGTCTTAACTGTACAGACTGTGTGGAGTAATATATGAAAGTTGCAGTTTGTGCTGCCTCTTGCAGCATGCATGAAAAAATAGTAAATGCACTGCTGCTGTTTTATGacagtcattttttttctttgctgacATTCCTTTGGTAAGTTTGTCAAAAGGCCAGACACTTTGGCTTCAAGAAAGAGCAAATTTTGAACTGAATTTGACGTTTATTCATTACTTGTCTGTCTCAGATGATTTCTGTCGTCTGTCTCAGATGATTTCTGTCGCAAACTGCACTGGCTGCACGTCTGTAAAACTGTCTCGGCTGTTGCCATAAATGTGAATGAATTCATTGCGACAGTGTGGTTCCTGTTCCGAATGAAGCTTGCAAGTTTccttcatgctttttttttcttgattcaCTATGAAGGATTTACCTGCATCATGCATTTACACGCCTACAATAAACACTGCCGTCTTGCTGTCAGACACATAATCGTGTAATTTACTGTTTTCTTAAAAATCTGTGTTTTCCCacttataaaatgagcagtgagAGCTA
>XM_039801331.1
ACGACAACACAGGAAGCTACTGCTTGGAAAAAGCAAGAACTTTAAAGAAGAACAATCATCAcatcaatcaaatcaaaataaGTATGAATGTGGGCGTAGCTCACAGTGAGGTGAACCCCAACACGAGGGTGATGAACAGCAGAGGAATATGGCTCACCTACCTGCTGCTGACCGTCGTGTTGCACATCGTCCTGCTCAGCATTCCTTTCTTCACTGTGCCGCTCGTCTGGACTCTTACAAACGTCCTCCACAACCTGGTGATGTACCTGTTTCTACACACAGTGAAGGGCACTCCCTTTGAGACACCAGACCAAGGCAAAGCTCGTCTGCTCACACACTGGGAACAGATGGACTACGGTGTCCAGTTCACATCTTCACGCAAATTCCTCACTATCTCACCAATTGTTCTGTAA
>XM_039801332.1
ggggttaaagaaaaaaaaaaaaaaaaaaaaaaggaatttccTGGTGAGCTACGACAACACAGGAAGATGAATGTGGGCGTAGCTCACAGTGAGGTGAACCCCAACACGAGGGTGATGAACAGCAGAGGAATATGGCTCACCTACCTGCTGCTGACCGTCGTGTTGCACATCGTCCTGCTCAGCATTCCTTTCTTCACTGTGCCGCTCGTCTGGACTCTTACAAACGTCCTCCACAACCTGGTGATGTACCTGTTTCTACACACAGTGAAGGGCACTCCCTTTGAGACACCAGACCAAGGCAAAGCTCGTCTGCTCACACACTGGGAACAGATGGACTACGGTGTCCAGTTCACATCTTCACGCAAATTCCTCACTATCTCACCAATTGTTCTgTATATTCTTGCCAGTTTCTACACAAAATACGATCCCACACATTTCCTAATCAACACGAGCTCCCTCCTTAGTGTCCTCCTCCCAAAGTTGCCTCAATTTCACGGAGTACGGATATTTGGGATCAACAAATACTGATAGAACTGACTGAACTTTGGATTTTAACCACCAAACACTGGACTTCTAGTTTTCCGTTTCTGCTGAACTATTTTATGACTAGAGGTTGAGGAGAAGAGAACCACTTGGATTTGTCTTAACTGTACAGACTGTGTGGAGTAATATATGAAAGTTGCAGTTTGTGCTGCCTCTTGCAGCATGCATGAAAAAATAGTAAATGCACTGCTGCTGTTTTATGacagtcattttttttctttgctgacATTCCTTTGGTAAGTTTGTCAAAAGGCCAGACACTTTGGCTTCAAGAAAGAGCAAATTTTGAACTGAATTTGACGTTTATTCATTACTTGTCTGTCTCAGATGATTTCTGTCGTCTGTCTCAGATGATTTCTGTCGCAAACTGCACTGGCTGCACGTCTGTAAAACTGTCTCGGCTGTTGCCATAAATGTGAATGAATTCATTGCGACAGTGTGGTTCCTGTTCCGAATGAAGCTTGCAAGTTTccttcatgctttttttttcttgattcaCTATGAAGGATTTACCTGCATCATGCATTTACACGCCTACAATAAACACTGCCGTCTTGCTGTCAGACACATAATCGTGTAATTTACTGTTTTCTTAAAAATCTGTGTTTTCCCacttataaaatgagcagtgagAGCTA

Function

symbol description
ormdl2 Predicted to be involved in cellular sphingolipid homeostasis; ceramide metabolic process; and negative regulation of ceramide biosynthetic process. Predicted to act upstream of or within negative regulation of sphingolipid biosynthetic process. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be part of SPOTS complex. Orthologous to human ORMDL2 (ORMDL sphingolipid biosynthesis regulator 2).

NR:

description
PREDICTED: ORM1-like protein 2

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039801330.1 True 1182 mRNA 0.42 4 11746307 11749685
XM_039801331.1 False 413 mRNA 0.48 4 11747712 11750559
XM_039801332.1 False 1181 mRNA 0.42 4 11746307 11750609

Neighbor

gene id symbol gene type direction distance location
cd63 NA coding downstream 15226 11716619 ~ 11731081 (-)
zgc:56699 NA coding downstream 46355 11696956 ~ 11699952 (-)
si:dkey-190g6.2 coq10a,LOC106917050,LOC103139137,LOC102221461 coding downstream 160337 11580293 ~ 11585970 (-)
racgap1 racgap1 coding downstream 215229 11521321 ~ 11531078 (-)
bin2a LOC102783891 coding downstream 227819 11510733 ~ 11518488 (-)
spats2 spats2,LOC102777081 coding upstream 34194 11784803 ~ 11806444 (-)
LOC120559301 LOC103366116 coding upstream 67541 11818150 ~ 11825217 (-)
LOC120558426 LOC102786184,LOC101465378,LOC100693664 coding upstream 85054 11835663 ~ 11841573 (-)
LOC120559814 NA coding upstream 94102 11844711 ~ 11848087 (-)
slc13a3 slc13a3 coding upstream 104441 11855050 ~ 11863694 (-)
G48911 NA non-coding downstream 130598 11607970 ~ 11615709 (-)
G48910 ankrd52 non-coding downstream 139693 11605733 ~ 11606614 (-)
G48907 ankrd52 non-coding downstream 145799 11600292 ~ 11600508 (-)
G48886 cs non-coding downstream 167319 11576539 ~ 11578988 (-)
G48903 LOC102783589,LOC107599367 non-coding downstream 173318 11564071 ~ 11572989 (-)
G49024 NA non-coding upstream 252658 12003267 ~ 12063255 (-)
G49084 NA non-coding upstream 369049 12119658 ~ 12121550 (-)
G49092 NA non-coding upstream 390326 12140935 ~ 12141414 (-)
G49112 NA non-coding upstream 396119 12146728 ~ 12147033 (-)
G49118 NA non-coding upstream 461134 12211743 ~ 12213541 (-)
LOC120558961 NA other downstream 237970 11503827 ~ 11508337 (-)
G48697 NA other downstream 1012420 10641405 ~ 10733887 (-)
G48523 NA other downstream 1720482 10024994 ~ 10025825 (-)
hipk1a LOC103359735 other downstream 1961066 9766311 ~ 9785241 (-)
c1qtnf12 fam132a other downstream 1992621 9727874 ~ 9753686 (-)
srxn1 srxn1 other upstream 135356 11885965 ~ 11891139 (-)
peds1 LOC104919928,LOC103354371 other upstream 208770 11959379 ~ 11979035 (-)
G49083 LOC103354491,LOC102226477,LOC108232148 other upstream 376277 12126886 ~ 12128425 (-)
dnmt3ba NA other upstream 396805 12147414 ~ 12169209 (-)
ppdpfa LOC104933328,LOC101073585 other upstream 470125 12220734 ~ 12223028 (-)

Expression


Co-expression Network