ythdf1 (LOC104938233,LOC103354577,LOC106952594,LOC100697389,LOC102786472)


Basic Information

Item Value
gene id ythdf1
gene name LOC104938233,LOC103354577,LOC106952594,LOC100697389,LOC102786472
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 12259997 ~ 12270531 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039801415.1
GTCAGCGACGTCATTTCCGGTCCGCAGACCCCGGATGAAGCTGCCATTGGGGCAAGTGAGCAGGGCCACCGAGGCTGGTTGGATTTTAATTTCACGGTGAGGGGACCGGAGCGGATTGAAGCCCCGCTGGATTAATGTCGACAGGGCAGCGCGGAGTGCCAGCAAGGGCTACGACGAGCAAAAGGTCCGCGCCGAGCAGAGACACCGCCGGCTAACGGCTGCTGCTAACTGTGTTTAACTGCAAGCAAACTACCGCGGAGCAGGGAAACAGCTTCTCCAGCCATTAGCCTCTGCACACAGCGGAGTTTGTGCAGTTTACACACTGTACGTGTTGTCAGGGTTGTTCAGTCTAACACAACACCTGGTGGATGAATGATGTCTGCCGCTAGTATTGACCCTCAgACATCGAAAGGACAAGATGCAAGCAAAGCCTTTCCAGTTTCAGTGCAGAATGGCTCCCTCCACCAGAAGGATACTGTTCATGACAATGACTTTGAGCCTTATCTCACCAACCAGTCTAATCAGAATAACAGCTATCAATCCATGACAGACCCTTACCTGTCCAGCTACTATGCCCCCTCCATTGGATTTCCTTACCCTCTCAGTGAGGCTCCTTGGTCTACAGGAGGTGACCCACCAATTCCCTACCTGACACCCTATGCCCCCCTCAACAATGGAGACCATCACTTCATGCACGACACAGTGTTTGGGCAGCCGAGTGGGCTCAGCAGCAGCATCTATCCACACAGGTTTAACTTTTTCCCAGAGAACCCGGCCTTCTCAGCCTGGGGCACCAGTGGTTCTCAGGGCCAGCAGACTCAGAGCTCAGCCTATGGGGGGAGTTACAGCTACCCACCCAGCTCTCTAGGAGGCACTTTAGTCCCTGATGGCCAGACAGGTTTCCATAGTGACACCCTGAGCAAGGCTCCAGGTATGAACAGCCTAGAGCAGGGCATGCTGGGCCTAAAAATAGGTGGAGATGTGACAGGAAGTGGCTCGGGTGTGAAGAGTGCAGGCTCTCTTGGAAGTGGCAATGTAGCTGCAGCTGTTGCCACGGGCAACGGCGGCACACCAATTGGAATGCCCCCTCCGAAACCTACATCGTGGGCTGCTATTGCTAGTAAACCTGCCAAGCTGCAGCAACAAAAGACCAAGAACAAACCTGGCGCACCCATAGCTGGAGGAGGTCTGCCTCCACCCCCCATTAAACACAACATGGACATTGATACATGGGATAATAAAGGGGCTGCTACTAAGATGGCCCCTCCTTTGCCCTCccatcaccatcaccaccaccaccaccagcagcaccAGCCCCAGCTTCACTCCCATGCTTCCAGTCTCCTGCCTCCCCTTCAACAGTCCCTACAGTCTGCCCAGTCCCTCGTGCAGCAGATGACCATGCAgggtcctcctcctccacagtctTACCATAACCACAACTCCGCTCCAACACCTCAGACCCGCTGGGTAGCCCCACGCAATCGCAACTTGTGCTACGGTGGCGGAAGCTTGGACAGCAGTGGCTCCTCTAATGGCTGCGGTATTGGTAATGGAGGGGGAGGGGGCGGGGCCATCACTCCAGAGCCGGGATCAGAGTCCCACCCTGTGCTGGAGAAGCTGCGGGCGGCCCACAGCTACAACCCCAAGGAGTTTGACTGGAACCTGAAAAATGGACGCGTGTTTATCATCAAGAGCTACTCTGAGGACGACATCCACCGCTCCATCAAGTACTCCATCTGGTGCAGCACGGAGCACGGCAACAAGCGTTTGGACACGGCCTTCAGAGCTATGAACTCTAAAGGTCCCGTCTACTTGTTGTTCAGTGTCAACGGCAGCGGCCATTTCTGCGGTGCGGCGGAAATGCGCTCGCCTGTGGACTACGGCACCAGCGCTGGCGTTTGGGCGCAGGACAAGTGGAAGGGCAAGTTTGATGTGAACTGGTTGTTTGTTAAGGACGTGCCCAATAGCCAGCTGCGCCACATCCGCCTGGAGAACAATGACAACAAGCCAGTCACCAACTCTCGTGACACCCAGGAGGTTCCTCTGGAAAAGGCGAAGCAGGTGCTCAAGATTATCGCCCAGTTCAAACACACCACCTCCATCTTTGATGACTTTTCCCACTATGAGAagaagcaggaggaggaggaggtggtgagaAAGAGCTATGAGCCTGCCCCAATACAGAGCCGATCCCGAATTGATCAGGATCGTCAAAAGTAAACAGAAGACAACTGTCGATGAaatttaaaaaggaaacacaaagACATAGTGAAATTGAAAACtaatattttctatttatttaattttgttgaCTTTGGCCCATGTCAAACGTTTGACCCACAATGCTCCTGGCTCCCAGTCTTTAAGATGTATTTGCGTGCAGGGATGAAGCTAGTTCCACCAGTTGAATCGCttcaataatatatattttcttgttttgtctgaattTTTTAGCCTTACAAATCTCTATCGCTACCCCGGAACTTGCATTCTTAACTAAATATAAGTAACAAATATCTGCACGTCTGTTTTTGAAAGTCTCTTGACAACATGCTGCTGATATTCAGTGACTGTTCACtttgtggtttgtgtgttgGAGAAATGTTAAGTGCTTGTAATGGTTAACGAGTGAACAAGACTTTATTGACAAATGTCTGCTATCTGTTTGTGGCCAGTTGTATTTTATATGATCAGACAGAAAAAATAATATGCCACTTTTTTCATGTATGGGCTGTTTCACTTTGGTGGGGGAATGTGTACACTGAAAGTTTCTGTATGCATAGAAATAATCGTGCAAGGTTGTGACGTTAGAAAGCATAACTGTTAGGAAAATATTTTGAATAATGTATCACCTGGCTTACAACTGGTTCAATCTAACATTAAGGTGCAGAATATATGGGATTTTGTCTCTCCTAGAGCAGAGCCTTAACATTTCTTTTTAGCACTAAATTAAattagtatttttctttttccagaaCTGTACCTCAAAATCTTTCAGCTAGAGATTCAGGGTTAGAATGTCTAGAGATCAAACACTCTTAAAGGTGGTCCCTCTCTTTCTTATTTGAAGGATGGAATAactaatatactgtattaatTTAACAACACAAAATTTGGTTTCTGTCTTATTTCCCTTAAACAATGACTTTTATTTCCCTGCTGTTCAAACAGGAGATCTCTGTTTATAAAAGAAAGTCTGGAGGAAATGTAGCATGTACTGCTTTTAAAACTCAAGCCAGGCctttcactttgtttttctttttgtttcttgttCTTTCTTAACTAAATTATAATCTTGGCATCATTTTCATTGCTATAACCTGTCCACATCATCCTCATAAAATGTAAGCTTTAATGTACTGGCATTTCTAACTTGAGATTGCCTCAAAATGTTTAACTGTAGCATTATACTTAACTGATTTATTGTCAAGTGTATGAAAACCCAGAGACTAGTGTATATGGTAAatgtttgtgactttttttaaacttgcttgctgtattgtgtgtgtatgcaagagtgaaagaaaagagagggagtATGTTTGTGGAGCAATCAGAGTTATATTACTGGTATTGGATTATAGAAAATTTatgcaaaaaaatgttttaaagtcACCCCTGAATTAAATATCCATTGTATCAGAGGTCACTATCACATTCTTAGATTTGATCATGTTCATTATTAAAGATATACTTATCTGTTCA

Function

NR:

description
PREDICTED: YTH domain-containing family protein 1-like

GO: NA

KEGG:

id description
K20102 YTHDF; YTH domain-containing family protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039801415.1 True 3708 mRNA 0.46 6 12259997 12270531

Neighbor

gene id symbol gene type direction distance location
dnajc5aa dnajc5,LOC104933326,LOC101169856,LOC107090698 coding downstream 22260 12233105 ~ 12237737 (-)
LOC120558333 NA coding downstream 29709 12224304 ~ 12230288 (-)
LOC120559362 LOC102786474,LOC103354471 coding downstream 140851 12103891 ~ 12119146 (-)
LOC120559249 ptpn1 coding downstream 260552 11986410 ~ 11999445 (-)
LOC120559253 ube2v1,LOC102081483,LOC108249566,LOC101171992,LOC106536681,LOC107391298 coding downstream 302606 11953175 ~ 11957391 (-)
nkain5 LOC103354565,LOC101477820 coding upstream 956 12271487 ~ 12280037 (-)
uckl1a LOC103355333,LOC101079427,LOC103139074,LOC101476695,LOC102196708,LOC102308715,LOC103385400,LOC101173865 coding upstream 35727 12306258 ~ 12323341 (-)
samd10a LOC105935172,LOC103139076,LOC103354595,LOC107095944 coding upstream 52954 12323485 ~ 12331992 (-)
mfsd2al2 LOC102788240,LOC103355362,LOC102198151 coding upstream 121724 12392255 ~ 12410148 (-)
fam110a NA coding upstream 141690 12412221 ~ 12415372 (-)
G49115 NA non-coding downstream 15164 12243202 ~ 12244833 (-)
G49118 NA non-coding downstream 46456 12211743 ~ 12213541 (-)
G49112 NA non-coding downstream 112964 12146728 ~ 12147033 (-)
G49092 NA non-coding downstream 118583 12140935 ~ 12141414 (-)
G49084 NA non-coding downstream 138447 12119658 ~ 12121550 (-)
LOC120558423 NA non-coding upstream 80896 12351427 ~ 12368708 (-)
G49178 NA non-coding upstream 101290 12371821 ~ 12373308 (-)
G49177 LOC108232018 non-coding upstream 104806 12375337 ~ 12375562 (-)
G49179 NA non-coding upstream 105757 12376288 ~ 12376976 (-)
G49180 NA non-coding upstream 106448 12376979 ~ 12380785 (-)
ppdpfa LOC104933328,LOC101073585 other downstream 36969 12220734 ~ 12223028 (-)
dnmt3ba NA other downstream 90788 12147414 ~ 12169209 (-)
G49083 LOC103354491,LOC102226477,LOC108232148 other downstream 131572 12126886 ~ 12128425 (-)
peds1 LOC104919928,LOC103354371 other downstream 280962 11959379 ~ 11979035 (-)
srxn1 srxn1 other downstream 368858 11885965 ~ 11891139 (-)
fkbp1aa LOC100692950,LOC107391264,LOC103354614,LOC101168621 other upstream 118450 12388981 ~ 12391677 (-)
prickle3 prickle3,LOC102790576 other upstream 145072 12415603 ~ 12439909 (-)
camta1a LOC103354943,LOC102299287,LOC102779653,LOC102211199,LOC106922242,LOC104961361,LOC107390471,LOC108232047,LOC103144055 other upstream 653927 12924458 ~ 13221338 (-)
LOC120558587 NA other upstream 980455 13250986 ~ 13253608 (-)
LOC120558437 NA other upstream 1037829 13308360 ~ 13312729 (-)

Expression


Co-expression Network