LOC120559597 (LOC103373045,LOC100705386,LOC101481619,LOC102789314)


Basic Information

Item Value
gene id LOC120559597
gene name LOC103373045,LOC100705386,LOC101481619,LOC102789314
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 14905051 ~ 14920772 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039801430.1
AGTGGGCGCATGCAAGACGCGCCTACCGAGGCAagactttgctttttttttctccgagACAGGCGACATGAGGTTCCAAGACACCTGTCAGGAGGACTACACATCCAGAACCTGTGTGCGAACTGGAGGCTGCGTCTTTTACCGTTTAACCATGGGCGCGCTGATATCGTTATTATAGCCTCTCGGTGACCAAGGAGCGTAAAGTTATTCTGCTGCTTTCTTGGTTTTCTTTGTGTTATTCCTCTTTATTTCCTCAAGCCGCATGAGTTCACCGCTGTTTTTAGGCCAGCTGGTCGGGGTTCCGTTAGAAATAATGCACCCTACCATGGAGAAAGACACGACTTACACTAAGATCTTTGTCGGCGGGTTGCCGTACCACACCAACGACGCTTCACTTCGGAAATATTTCGAGACTTTCGGGGACATCGACGAGGCGGTGGTtatcacagacaaacagacggGCAAGTCCAGAGGATATGGCTTTGTGACCATGGTGGACAGGGGAGCAGCAGAGCGGGCGTGCAAAGACGCAAACCCCATCATCGACGGCAGGAAGGCCAATGTGAACCTGGCGTACCTGGGAGCAAAGCCTCGCAGCTCGCAGACAAGTCTCTCTGTTGGAGTTCAGCAAGTCCATCCTACGTGGGCTCAGAGGCAATATGGATTTGCCCAGCAGTACGTCTACCCCCAGGCGTTCCTCCAGCCCAGCCTGTTGCTGCAGTCCCAGCTCAGCCCCGCAGCTGCAGCACTCGCCTCCCCTTACCTGGACTACAGCTCCGCCTACAGCCACTACGCCCCCACAGGACTGGAGCAGTATCCCTACACACCTTCCCCGTCGCCCTCTGCTGGCTACCTCAGCTACAGCTTCTCCCCCGGCACGCCGGCGCCCACTCTCACCGCATCCCCGACCCCTCCGGCTGCCATCCAACCTTCTCTGGCTGCACTCACCACCATGTCTGCCGCCCCACAGGCCTTCCTCCACTATCCTCTGCACCAGCCGGATCGCATGCAGTGAGCAGCTCTTAGTGTAGCTGCAGCTGCTGAACTAATGATTCAAAGCAGCGTGACTGTTGACCTGTGACATCATCAGGATAAGACTGGATAAACAGGGAGAGAGTGTGATGTAATCAAAAGGGCTTTTAGAAAGCACTCACAttcctgtttttttatatatatatatatatatcattgttgttgtaataattgATGAAAAATGTTCTATTGCTGCTGTCATCAGCATATGATCTGAATGTTTTTCACAAGTGGTAGATGTCTGGGACTGGAATTAGACCACTAGTAATCTTCTGGACCTTTTTTGTCTTACCACTGACCCTCAGCGCTGAGGTTGGTGGCAGGGCCGACTGCTGGAGAGCGGACAGGTAAAGACGTTGAGAAATATGTCTGCTTGACATGATGCTGCGGCTGCAGTTTCTCTAAAGGTACTGAGCCGAATGCTGGATATTAGCCAAGCTGAGAGCCAGTTCCTCTTTCAGAAACGAAGGTCCAATTTCCTCCTCTTCAAGGTTACCTTTCTGTCTATGGCCTtagagatctctctctctctctttctgtacctggttcagtttgtgtttttttattagacGCTCATCTCAAatgaacaaaatgtttaatgtgcTCCCTTTTGTTCCTTTTATCTACCGCTGGCAAGTCATAACACGGTGATCATCAGTTTAACAGAATATGCAATTATGATGATAAAGGATAAGCATGAATGAGGTAGACAACActggtattttgtttttgtattgctACTGCTAGAACATTACTGAGAGAAAGACTTTGTTAACACTTAAAACACAATAGTCATCACATGAAATACCTGCAGTGGCTTATTAGGCTATTTTTGACCCGTAACTTTTGGAGTGTCTGGATTTGGTATTTGGGGATTGTTTGGTTTTTATGATACCTAAATTACAAAGTTGTCAATACATATCAAGTAAATGTGTTTGGATGTAGGTGATGATGTtactgaatgtgtgtgagtgtatttgGTGTCTGATTCTCTGTGCGTTAGTTGagtaagagagaaatagagcgATGCAGTATATGCCAGTGTCAGGACCGAGCTCCATTTCCAGCCCATTGTACTGGTCAGagttgtttctttgtttgtttttttccagctgTACAATACAGACAGATGCTTTAGCGATGATACTGAAAGCTCACGGTGCTGTGACACCACCTTAGTAAAGTCATAAACCAAGCCATAcatcacatttaaaacaaatatgcaaaataaaatgaatatttcTAAATAA

Function

NR:

description
PREDICTED: RNA-binding protein 38-like

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K25006 RBM24_38; RNA-binding protein 24/38

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039801430.1 True 2282 mRNA 0.47 4 14905051 14920772

Neighbor

gene id symbol gene type direction distance location
LOC120559665 rnd1,LOC104919641,LOC101482985,LOC103358630 coding downstream 71120 14823706 ~ 14833931 (-)
ddx23 ddx23 coding downstream 90844 14805105 ~ 14814207 (-)
LOC120558823 adcy6,LOC107094831 coding downstream 155030 14707418 ~ 14750021 (-)
LOC120559225 g6pd,LOC104919647,LOC107391210 coding downstream 207034 14685045 ~ 14698017 (-)
spryd4 spryd4 coding downstream 284912 14616611 ~ 14620139 (-)
LOC120559456 ncoa3,LOC104951720,LOC104919659,LOC100705914,LOC103373047,LOC102789026 coding upstream 5516 14926288 ~ 14991890 (-)
zgc:113278 LOC104951675,LOC103357347,LOC102293950,LOC100706617,LOC102213464 coding upstream 81189 15001961 ~ 15010995 (-)
col9a3 NA coding upstream 156057 15076829 ~ 15094038 (-)
ogfr NA coding upstream 174417 15095189 ~ 15101900 (-)
LOC120558694 taf4 coding upstream 746406 15667178 ~ 15681715 (-)
G49882 mip,LOC106516764,LOC103373044,LOC108231939 non-coding downstream 2192 14902089 ~ 14902859 (-)
G49878 NA non-coding downstream 15537 14888775 ~ 14889514 (-)
G49876 baz2a,LOC102790184 non-coding downstream 19665 14884146 ~ 14885386 (-)
G49862 ptges3,LOC102790477 non-coding downstream 39304 14862795 ~ 14865747 (-)
G49807 NA non-coding downstream 221066 14682710 ~ 14683985 (-)
G49977 tcfl5 non-coding upstream 151065 15071837 ~ 15073424 (-)
LOC120559280 NA non-coding upstream 211880 15132652 ~ 15137753 (-)
LOC120559278 NA non-coding upstream 293198 15213970 ~ 15214624 (-)
G49991 NA non-coding upstream 297289 15218061 ~ 15218563 (-)
G50004 NA non-coding upstream 381626 15302398 ~ 15302637 (-)
G49845 naca,LOC107737655,LOC106571941 other downstream 51234 14845338 ~ 14853817 (-)
map3k12 LOC104930685,LOC103358642 other downstream 353493 14539788 ~ 14551558 (-)
G49766 LOC103358643,LOC101487433,LOC103144045,LOC101072611,LOC101159823,LOC107094832 other downstream 370446 14532124 ~ 14534605 (-)
LOC120558545 LOC104942567,LOC103358644 other downstream 472057 14416336 ~ 14432994 (-)
LOC120558710 NA other downstream 759829 14140380 ~ 14145222 (-)
G50217 fgd3,LOC104966710 other upstream 1360272 16281044 ~ 16283856 (-)
LOC120559328 smim4 other upstream 2186062 17106834 ~ 17115047 (-)
G50712 birc7 other upstream 2767343 17688115 ~ 17689760 (-)
zbtb46 zbtb46,LOC102795869 other upstream 2914308 17835080 ~ 17895082 (-)
samd10b samd10,LOC107570869 other upstream 3053521 17974293 ~ 18101572 (-)

Expression


Co-expression Network