LOC120559621 (LOC104935447)


Basic Information

Item Value
gene id LOC120559621
gene name LOC104935447
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 17158804 ~ 17162048 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039801477.1
GAGAAGAAGTGGCATGTGTCAGACTGGTTTACCCACATTGGGGAGCCACACAACTTCCCTATCACGCCACACCCAGACCTGCCTATAAAGCAGAAACCAAAAGATAAAGAGATGCACAGACAGAGAACAGCTACCACCCAACCCTCTCCATCCTCACCAGCAGTGAAATCTCCACACAGCACTACCATGAGTATGAGGATCACACGCAGCAGCCGCCAAGGAGTACGCATGTCTTCAGGGGGCTTCAGTAGCATGTCTATGGGATCCTACTCCAGCCCCAAGATCAGCAGCGGGGCTAGCCAGGCGGCCTCGATTACAGCTGTGACTGTCAACAAGAGCCTGCTCACCCCAATGAAGATAGACATCGACCCCAGCTTACAAGTTGTTCGCAACCAGGAGAAAGAGCAGATCAAGACCCTCAACAACCGTTTTGTCTCATTCATTGATAAGGTAAGACACCTGGAGCAGCAGAACAAAATGCTGGAAACCAAGTGGAAGCTGTTGCAGGGACAGACTGCCACCTCCTCTAATGTTGAACCCATGTTGAAGGCCTACATCTCCAACCTCCAAAGGCAGCTGGAGTTTCTCAACAATGACAAACAAAAACTTGACATGGAGAACAATGTCATGCACAAAAATGTGGACGACTACAAGAAAAAGTATGAGACAGAGATCATCCACAGGAAtgatgcagagaatgaatttgtCATGCTCAAGAAGGACGTGGACGCAGGTTACATGTCCAAGATGAAACTAGAAGACAGTGTGCGTCTTATCCGTGATGAATTCAACTTCCTCAAGGCTCTGTATGACGAGGAGCTGCATGAGCTGCAGGAGAGCCTGAAGGAGACCTCCGTGGTGGTGCAGATGGACAACTCCCGTGGCCTAAATATGGATCAGATTGTGTCTGAGATTAAGGCTCAGTATGAGGACATTGTTGCCCGCAGCCGTGAAGAAGCTGAAAGCTGGCACAAAAACAAGTTTGACCAGATGACTGCAGAAGCCAACCAATACGGCAATGAGCTGCGTAGCACAAAGGGGGAAATATCTGAGCTCAACCGAATGATCAGCCGCCTGCAGAATGAGATCCAGGCTGTAATGGCACAGCGTACCAACCTTGAGGGCCAGGTAGCCGAAGCGGAGCAGCGTGGGGAGGGGGTCGTGCAGGATGCCAAGGCTCGCATCAGGGACCTGGAGATGGCTCTGCAGAGGGCCAAGCACGACATGGCTCTGCAGCTCAGAGAGTACCAGGAGCTCATGAATGTGAAGCTGGCCCTGGACATAGAGATctccacctacaggaagttgctggagggagaggaggaaagACTTGGAAAGGACTCCTTTGTCAACATCCAAACAGTCCCCACCAAAACCGTCCAGGTTGACAACTACAGGCCGCGAAGACGAAGCGCAGTTCTCATCAAGACAGTGGAGACCGAGACCCATGACAAAACATACAAAACTGCAGCACATTAGCCTGCTGGTGGCCATttaacttttactttacttttactttactttaatcTCTTTGTAACCTATAATAGGCCAACTATACAAACAagccaatgtgtgtgtgtatttgtttatttttattctccTATTGGATGTCACATTATTTATCACTCCCTGTGTTTAAAATAAAGATGAAGCCTACTCAGCTGCATGATaaa

Function

NR:

description
PREDICTED: keratin, type II cytoskeletal 8-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039801477.1 True 1673 mRNA 0.49 9 17158804 17162048

Neighbor

gene id symbol gene type direction distance location
si:ch73-233m11.2 NA coding downstream 1254 17153488 ~ 17157550 (-)
slmapb LOC103354436,LOC104935421 coding downstream 16860 17130282 ~ 17141944 (-)
abhd6b abhd6,LOC103354432 coding downstream 34517 17119666 ~ 17124287 (-)
kctd6b kctd6,LOC101466953,LOC104935404,LOC100692855,LOC107097548,LOC103354431 coding downstream 39242 17116150 ~ 17119562 (-)
LOC120558578 LOC103467546,LOC102230394,LOC106947997,LOC105927130,LOC103145058,LOC101167287,LOC104935375 coding downstream 53843 17098625 ~ 17104961 (-)
LOC120558336 LOC103354442 coding upstream 47168 17209216 ~ 17240743 (-)
rpl32 rpl32 coding upstream 80832 17242880 ~ 17246203 (-)
LOC120559574 LOC104961988,LOC104935553,LOC102207720,LOC101165305 coding upstream 163159 17325207 ~ 17358698 (-)
LOC120559199 grm7,LOC104935569,LOC103354449,LOC101484945 coding upstream 243054 17405102 ~ 17520570 (-)
tasorb LOC103354451 coding upstream 359880 17521928 ~ 17542122 (-)
G50553 NA non-coding downstream 5377 17152200 ~ 17153427 (-)
G50549 NA non-coding downstream 6866 17151317 ~ 17151938 (-)
G50548 NA non-coding downstream 8753 17148206 ~ 17150051 (-)
G50484 rbm39,LOC103373755 non-coding downstream 79509 17074875 ~ 17079295 (-)
G50483 rbm39 non-coding downstream 84071 17071122 ~ 17074733 (-)
G50567 slc6a6,LOC106905582,LOC103145023,LOC101165803 non-coding upstream 28029 17190077 ~ 17193635 (-)
G50561 NA non-coding upstream 41699 17203747 ~ 17205629 (-)
G50574 NA non-coding upstream 88602 17250650 ~ 17251274 (-)
G50647 NA non-coding upstream 308159 17470207 ~ 17470675 (-)
G50709 NA non-coding upstream 521000 17683048 ~ 17683519 (-)
LOC120559328 smim4 other downstream 43757 17106834 ~ 17115047 (-)
G50217 fgd3,LOC104966710 other downstream 874948 16281044 ~ 16283856 (-)
G49845 naca,LOC107737655,LOC106571941 other downstream 2304987 14845338 ~ 14853817 (-)
map3k12 LOC104930685,LOC103358642 other downstream 2607246 14539788 ~ 14551558 (-)
G49766 LOC103358643,LOC101487433,LOC103144045,LOC101072611,LOC101159823,LOC107094832 other downstream 2624199 14532124 ~ 14534605 (-)
G50712 birc7 other upstream 526067 17688115 ~ 17689760 (-)
zbtb46 zbtb46,LOC102795869 other upstream 673032 17835080 ~ 17895082 (-)
samd10b samd10,LOC107570869 other upstream 812245 17974293 ~ 18101572 (-)
LOC120558627 LOC103370864,LOC104963599,LOC101472162 other upstream 1712707 18874755 ~ 18886895 (-)
kcnd3 kcnd3,LOC102776651,LOC102303593,LOC100697611,LOC101470631 other upstream 1783920 18945968 ~ 19077781 (-)

Expression


Co-expression Network