LOC120559665 (rnd1,LOC104919641,LOC101482985,LOC103358630)


Basic Information

Item Value
gene id LOC120559665
gene name rnd1,LOC104919641,LOC101482985,LOC103358630
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 14823706 ~ 14833931 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039801574.1
GTTGGCGCGACAATATAAAGTTCCGCAGTGATTCCCTCATTGACTGCTGCTCtgcctcactcactcactcactggctggctgactgactgactgactgaggaAGAAGAGCAGAAACACAGCCGGTTACAGAGAGGATTTACAAAACTTCGTTATTATCCCCACTCTTATTTCTTTGTGATAGTCTGCCCGTTTAATTCATCTGCACCATGAAGGAAAGAAGACTCACGCAGCCTTTTGTAGCGAGGTGTAAACTCGTGCTGGTCGGGGACGTCCAATGCGGTAAAACAGCGATGCTACAAGTCCTGGCCAAGGACTGTTATCCAGAGACTTATGTCCCCACTGTGTTTGAAAACTACACCGCCTGTCTGGAGCTTGAAGACCAGCGTGTTGAACTCAGCCTTTGGGACACATCAGGTTCTCCATACTACGACAACGTAAGACCACTCTGCTACAGCGACTCAGATGCAGTGCTCTTATGCTTTGACATCAGCCGACCAGACACAGTAGACAGTGTGCTGAAGAAGTGGAAAGCAGAGATCCAGGACTTCTGTCCCAGCACACGGATCCTACTAATAGGCTGCAAGACAGACCTGCGCACAGACGTATGCACGCGCATGGAGCTGTCCAATCAGAAACAGACTCCCATCTCCCATGAACAGGGTTCGTCCCTGGCCAAGCAGCTTGGAGCAGAGGCTTACCTGGAGTGCTCAGCCTTCACATCCGAGAAGAGCATCCACAGTGTTTTCcgtaccgcggctctggcctgcATGAACAAACTCCAGCCTGCCAATAAACCCAGTCCCGTCCGCCGCCTCTCCAAGAGACTCCTACATCTGCCCAGCAAGACAGAGCTGCTCTCCTCCACCTTCAGCAAGGAAAAGTCCAAGAGCTGCTCCATCATGTGAATACTGTGGGAGCATGCAGGGGGGAAAAGAAAGCAAGGACAAGTAGGTAATTCAGCAGGGGGCCTAAGGGTGTGCAGGGGAAAGAAAGGAATGATTTCTACAATGCATCTCTGTCCTTTGCAGCATCCTCCTCGTcagccactgaaaagaattACACTTGCTACACTCTCTATATTCAACTCTGACACTGGACTTTTGATCACCAGAGacagagtgaaaaaaataaattacagctGTACAAATAGAGCATAACAGGCATTTTAATACCTTCTTGATTCCTTATAAAGGTTGCTGTGAGAGCTTAAATAAGGTCAGTGACTCCCAAGTGGTTGTAAACACTGCATTTGACTGCATTACCCTGATGAAATTCATTTGAAATTTTGATAGCGCTGCCCTTTCCCATCCATCTCTTTATCCGAATGTCTCTTTAAGGTCACGATATGGGCTGAGGTGACGAGATGAAATGTAAAATCTGACAGTGACAGGAAGTGGTACCTACAGAAATGCGGCTCGGGGAATTTCAAACAGCAGTTCCTCGTATAAATTATTCCCCCATTGACCCCTCACATTTGGAGATAAAAGCTGACAGTGGGGGGAAAGGGGAGAAAAAGGAGCAATTTGGCAAAGCAGAGTGTTCATTTGCAAAGGCAGTCAGAGGATGAACTGAGCACACGTCTGAAGGAGCCAGTGTGACTCAGCACTCCCATGAGCTATAAAACAGTCTAGGTGGACTTGCTGTGACATAGCAAACACAAAATCCTAGGCCATGTAAAGACCGTCGGAGCATGTTTTTGTCAGATCCCCTTTTATTACCCATCACCACAGCAGTATTAATTGTTCAGTTATTTATCACAAGGCTTGATTTTAGAGATGTTACATTAATGATGCATCTTCTCACTGTCCACTGATACTTTAAGAGCTGCTTTAATGGATATCAGCTTTTGTTCCAACAAAAactaattttcttttctttttttaaagataaaacaTAAAAGATTTCTTTTCACACAAGCCAAACTGTTTTGTACCAAAGGGAGTCTTAGaaatctctgtttttttttgaagatgCACCTGCTGCCATTTCCAGCCTGGATAGTTGCATTAACACTAAATTTCCCTGAGATGATAGGTGGGAAGGTTGATTTGaatcacaaataaaaacaggctGGTCCTGTCTGAAGAAAgaattttctttcctttttctctaaaaaaaatattttcattttatttttcaacttcCCTGAAAAGTATTCTTGACATTTTCcatttataaaaaagaaaatttttgTCTGGATGTTTCTACTTGCTTGTGgctgtctttgttttgttttgtggctGTTGATGTTGTTCTTGTATTTACTTGAGTCTTCTAGCATTAGCTGCTGTTGACAGCTCAGCTAATGGAGGATTGAGGATTTGTAGGTCTGCACCGAGAAGCCCAGAGTTCTCTGGATGTACGGAACACTGGAATTTTACGTGTTGCCTAGCAACAATGTGAGCAGGGGCAGGCGTGAGCGGGGTTCCTgcctcacagagagagagagggagggatggctCTCCGAGAGGACGCCTCACCTTTTATTTGTAGCATTAGACAGAAGCCACTGCGAAGGGGGCGGCTGGACATTTCAGGGAGCGACGGACTGCTCATGATCTCCACATGACGTCTAAAACATGTCTCTGTAGCTCTGCTTCAGTCGTTATTTCAAACAAGCTCCATGTAGTTCTATATACAGCCGTCGTTGAACTATTTCTCTTTTGCTCGTTTTTTGACGGACAGACTTTCATTTGTTGTACATATCCTTTCTAATAAATCTGTTTATTAGAAATCCCTAAAAAGAATGTTACTGaagcaaaacaaaatgtttgtgtCAAGTTGCCTATTATTATGGCTTTAAATTATTGACTGAATTCTGTATTTGTTATTGTCATATGCTCCTTTCTTTAAATCTTTGTTCAAATAAATATGTCTGATGTTCA

Function

symbol description
rnd1 Enables signaling receptor binding activity. Involved in actin filament organization; negative regulation of cell adhesion; and neuron remodeling. Located in several cellular components, including actin cytoskeleton; adherens junction; and plasma membrane.

NR:

description
PREDICTED: rho-related GTP-binding protein Rho6

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07531 RND1; Rho family GTPase 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039801574.1 True 2886 mRNA 0.44 5 14823706 14833931

Neighbor

gene id symbol gene type direction distance location
ddx23 ddx23 coding downstream 9499 14805105 ~ 14814207 (-)
LOC120558823 adcy6,LOC107094831 coding downstream 73685 14707418 ~ 14750021 (-)
LOC120559225 g6pd,LOC104919647,LOC107391210 coding downstream 125689 14685045 ~ 14698017 (-)
spryd4 spryd4 coding downstream 203567 14616611 ~ 14620139 (-)
col2a1a LOC103358639 coding downstream 232868 14565817 ~ 14590838 (-)
LOC120559597 LOC103373045,LOC100705386,LOC101481619,LOC102789314 coding upstream 71120 14905051 ~ 14920772 (-)
LOC120559456 ncoa3,LOC104951720,LOC104919659,LOC100705914,LOC103373047,LOC102789026 coding upstream 92357 14926288 ~ 14991890 (-)
zgc:113278 LOC104951675,LOC103357347,LOC102293950,LOC100706617,LOC102213464 coding upstream 168030 15001961 ~ 15010995 (-)
col9a3 NA coding upstream 242898 15076829 ~ 15094038 (-)
ogfr NA coding upstream 261258 15095189 ~ 15101900 (-)
G49807 NA non-coding downstream 139721 14682710 ~ 14683985 (-)
G49802 NA non-coding downstream 149858 14673628 ~ 14673848 (-)
G49801 NA non-coding downstream 151705 14669453 ~ 14672001 (-)
G49739 NA non-coding downstream 419919 14402710 ~ 14403787 (-)
G49716 NA non-coding downstream 421076 14400015 ~ 14402630 (-)
G49862 ptges3,LOC102790477 non-coding upstream 28864 14862795 ~ 14865747 (-)
G49876 baz2a,LOC102790184 non-coding upstream 50215 14884146 ~ 14885386 (-)
G49878 NA non-coding upstream 54844 14888775 ~ 14889514 (-)
G49882 mip,LOC106516764,LOC103373044,LOC108231939 non-coding upstream 68158 14902089 ~ 14902859 (-)
G49977 tcfl5 non-coding upstream 237906 15071837 ~ 15073424 (-)
map3k12 LOC104930685,LOC103358642 other downstream 272148 14539788 ~ 14551558 (-)
G49766 LOC103358643,LOC101487433,LOC103144045,LOC101072611,LOC101159823,LOC107094832 other downstream 289101 14532124 ~ 14534605 (-)
LOC120558545 LOC104942567,LOC103358644 other downstream 390712 14416336 ~ 14432994 (-)
LOC120558710 NA other downstream 678484 14140380 ~ 14145222 (-)
smim29 LOC104942556,LOC104932788,LOC105416285,LOC106572343,LOC105022745 other downstream 697883 14039735 ~ 14125823 (-)
G49845 naca,LOC107737655,LOC106571941 other upstream 11407 14845338 ~ 14853817 (-)
G50217 fgd3,LOC104966710 other upstream 1447113 16281044 ~ 16283856 (-)
LOC120559328 smim4 other upstream 2272903 17106834 ~ 17115047 (-)
G50712 birc7 other upstream 2854184 17688115 ~ 17689760 (-)
zbtb46 zbtb46,LOC102795869 other upstream 3001149 17835080 ~ 17895082 (-)

Expression


Co-expression Network