scrt2 (scrt2,LOC108249568,LOC102228875,LOC107391295)


Basic Information

Item Value
gene id scrt2
gene name scrt2,LOC108249568,LOC102228875,LOC107391295
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 11898818 ~ 11907613 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039801638.1
tcctctgtctgtgtgcgaATGCACAGACGGTTCAGTAGTAATTTGATGTGTGTCCCCGGGGACATTTGATGGATTAAAGCTAAGCAGCTCCATTTCGCAGCACCACCTGATCTTCCACTGCCTGTGCCCCATATAAAGGCTGGCGTGATTGCTGATCTCAGCTAGTCTGacagtctctctccctcctctctctgtctgtctccatctcttctcttcctcactggTCCCTTAAGCCTGCTGCATCACAGGAGCTATCCAGTGCTGAACAGGAtcgcttttattttttatttttttatttttctggggGAAGCTGGGGGAGCCAGAGAGTATCACACAGCATTGCCGTCAGCCTTGTTATCCACTGgtttccattttctttcttaTCTTATGTTTTTGGCCGTTGTCTTCACATTAAACGCAAGGATTACCGTCAAGCCAGCTCTGCTCGTGTGCTTCCTCAGAGggtctttcattttttttctcatgcgTTTTTCTCAGCTCTGTGTTTTTATCCATTGAAACATGCCCCGCTCATTTTTGGTGAAGAAGATCAAGCTTGATGATTTCTCTTCGGCCACTTccaatcatcatcaccacctgGACGACTCGTTCACTTTTGCACGCTCCATCACAGACTCGGTGACCAGCCTTGGGGTTCGTCTCAGCGAGAATGGCTACATCCAGGATTACATCACGCCATCTGTGTACCAGGGGGAGAAGAAAATGGAGCTGAAGCTGGCCTCGCCGGTGTCAGATCCCCTCTACACCCAGGTGAGCAGCGGAGAGGAGTACTGTGACCCCGACCTGAAGCACCCCGACAGCCCCCAGTCTGGCATGACAGCCAGCGGCTTCTACAGCGGTGAGTCGGAGGCCCTGGCCGAGGGTTACACCATGGATGCCTTCTTCATCTCTGACGGGCGCTCAAGGCGAAAGGGAGACACCGAGAGTCGCGGAGGGGGCTCGAGAAGCAGCAGTGCCAACGGTGGGGCTCAGGAGAAGGGAGCTGGCACGGCACGCCACTCCTGCAACGAGTGCGGCAAGACCTACGCCACCTCCTCCAACCTCAGCAGACACAAGCAGACGCACCGCAGCCTCGACAGCAAGATGGCCCGCAAGTGTCCCACGTGTAACAAAGTGTACGTGTCCATGCCAGCGTTGGCCATGCACATCCTCACCCACGACCTCAAGCACAAGTGCGACGTGTGCAGCAAGGCCTTCAGTCGGCCGTGGCTCCTTCAAGGCCACATGCGCTCACACACGGGGGAGAAGCCCTTTGCCTGCGCACACTGTGGCAAAGCCTTTGCTGACCGTTCAAACCTCCGCGcccacatgcaaacacactctGCCTTCAAGCACTACAGATGCAAGCGCTGCAATAAGACCTTCGCTCTCAAGTCCTACCTGAACAAGCACTATGAGTCAGCTTGCTTCAAGGGCTCTGCGGACGAAGACGACTCTGGATCAGAAAACTAACCACGAGGAAGAAGCTACATTTTGAACCCCTGTTGTAGGTTCACAACCAATAACCCTGTTCACTCTGCCCTCCATGccttttttcttccctttttttagAAAGCAATATTTTCACTGAGATTACGTGAAGAAACTCTAATGATTATGGCAAAGACAATTTCAAAAGATGCTGGATTTTTTTCCCTGCACAGTAGCTAATCGTCCACAGAAACATACAATCAAACAACCTTCCCCCAAATAGAGACTGTAGATGATAGTTGTACACAATTAAGCAACATGTGCTCGCACGGACGTGggcacatgtaaacacacatacactcacacggACATgtatgcaaatacacacacacacacacacacacacacaaagatgtaCGCACgtgtgcacatacacacagagacacactcacacacacacacacacacacacacacaattatataTGAGGCCTGGCATGTGAATTTTTATCAATGACTATAATGATATTGATATCAATAGTAATAATATTTAGATTCCTGATATTTTATAGCAAATAGcaatgagaaaatgaaaaaaaaaacataaaaaaggacTAACagtgttcttttgttttttagagACAAAATGACCTCTTGTATTTTTATGCTGCTTTTTATTTGCTAAGAATTGAATTCTTTTGCAACTGCCAACATGaactttttatgaaaatgtgaaCTATGACAGTATTTGCAAAAAAGGGagatcattttaaaaaggtaaaaagacAAACCCCTTTTTCCACACCAATGTTTCAATTCAACGGATGTTATTTTTCTATTTGATTTttctaaatttatttttttgtgcttaTTATCCCTTGTTGATCTAAAGCATCTTTGTAACTGTGGGTATTcaaaaagaaataatttaaataagcTATACACGATCATAGGCCATAGGTCATTCAATTCATATCTGCAAGagcagtgattttaaaacaGGCCTGTTGAACAGGTTATCACACATCCAATTCATAGTCTCACCCTGATGTACAGACTTGGACAAAAACACTGGGAGCCAGACCAAATGATCTATTGTTATAAGTGCCATGTGCAGTTGACTTGTCTATAGCAATGAAAACTCTCGTTGTTCTTCCTCCACCACGGTGGCTTGCATAAACTCTGCTGCCTTTATGGTGAATCGTCCAGTCTTAAAGAGCAATCTTCACCCAGTGTTTGAGGTGCTCCCCCTCGCCAGTGTTACCTCAGAGTGAAGGTATGGACTAACACACCCTCAGTTACAAAGTGACAGTCAAATtattctgtttgtctgttttatatGTCGCTCCAGGCTCCGCCCACGGTTTAGATGCATACCATCTATTTATCATgtaaatactttatttatctACCTATTTAcctatttattaatttattcaccttattttgtgtatttattgaaGACTTGCTTATTTGTTAATtaccatgtatttatttattgtttataatttaaaaaatgaacatccATTGACCTTGTAAGATGCTGCTGATCTTCAAAGAAAATGTTTATATGCATGAAAACTGTAGAGAGTCCATTGGACTTAGTTTtttaaagaggaacaatgtacAGTACCAGTGTTAGGAGACTTCAAACGAATGAATGCAGAATTGTTTCCGTGGCAATAACTTTACTGACACAGCAACTGACATGTATAACAATCACAGCTGTCCTGTTTTCAGTCGATTTAGGGCAATAAAAAGAAACgatgaaaacaaaaaactaaaatattctCCATCTTGCTGTTTTCCAATAGTCCAGCTGCCTCCTCGTGACTGGAGATGTTTGGCCCTTTTTGTCTTTAAATCTCAGGCAATAAATAAGTCCCAGAAATGGCCGACGGTGATGTGCATGTACACATCGCTATGAAAATGTAACACTATCGGTTATATAATAATGGTAGgtgtaattatatatatatatatacaccaacATTTCAAAGGTGCAAAAGCAATAATGATAGTGATGCAGTGACAATGAGCAACACTCAATCCTATATGCAGCGAGTCCAAAACTGCTACAGGTGTTCATTTGACTGGAAAAGGCTGCTATTCTAtaatagtattattattttaacttgTCTCTTGTTTTAATGAGAAACCAGgtaaaaacaaatctcttcCGGCAGCTGAAAGGCAGGTGTGATTTGACTGAAATGTTAGAAGGTTACACAACAATCATTCTAATAAATTTAGGTCACTGACATAAGAAAGCATTAAAATACAGTTAGGTAAACGGTCACTACTGCTGCCAAATTATTCtgtgcagttaaaaaaaagctaAGAAAATCTCTGAGGTGTCAAAAGAGAGAATGGATGGAGGTATATACACGTCCTAACCAGCACTGATGGAAATGATCTTGACGTGAACTGTCTTGGtagagagagtttttttttaaaaagattgTTGTAATAAAACGACGCGCTGTAATGCACTTCTAACTCCCCCATCATTTGTCCATGCCTCTTGTCGCTTCCCCTCCCCTACCAGCCATCCTCATCCCATCCCAACTGCCTCTAAACAGACGCACCGAGGATGAGATGTGTTGAAGAGGGATTGGCGGAGGGTGGCAGAGTGTGGGAGGATAACAGGTGTTTGCAGACAGACTGCAGATAGGGAGCGTAATTGAGTCGGTGAGAGACCTCCAAAGGGAAGGTCAAGCACCAGCAGGCAAATGCACTGTCAGCTATTTGCATATTCCAAATGGATGACACCATCGCAGCAATGCTGAGCTCgccctaaaaacaaaacaaaacacaaaactgaggagaaaagagaggaaagaggagttTCTGCTCCATTTGTCCGCCCTCTCGTCCCTGCTTCACCATCATCCTGTCAATGGTCGTCTAAGTGCTACAGCTGAATCACTGCATGAGAGCATCCAAACCACCTGGCTCCTGATTAACTTGCAGAACACACAGTTTGGCACCTCGCCGTATTATTGAACTAATGCAGAATTCACTACTTCctatagatttttattttttttatatgtttcaTGTTTTACTGTGGGACACAGCTATAATGCATCTCCAAAACCTGGGGACTGCTTTTTAATGAGGCAGATAAAAGCATTGAGATCATTAAAAACACCAATTGAAAATGTACTGTAGGCTTAGATCTAAAACTGGCAGCATTACAGATCGTCCTCAGAGAAGATATTAATTGAGAGAAAGGGAGGCACAATTGGATTCTAAACTTCTGAATTTAGATGTAGGgaaacattgttcctctttgatgatttttgtaaatatatttgtAAATATATCACAGCAATAATATGACAATGCATGTAGACATTTAATTGCTCTTTTTCTATtcatgttgtcttttttttttattaaaaagaagaCAAATACAGGTACCAATTGCAGTCTGGGTGGCCACGCGAATCAGGGAGTGTCTTGATTAAAAAGCTATCTGTTGTAAGTTACAGACAAAACAACTTCAAACTCTGTGTATTCTCAAAGATTTGATCATGTTCTGTATGATTTttctgttcttgttttcttttatttatgtgCCCGGCTTGGCTGCGCAatgaaaaagtgccaaaaagtATGATTTCCATGACAAAAGCCTTCAACATATGGTTGGCTGCTTGAAACCTTCCATATGGtcctcaaagaaaaaaaaaaaactgattaagattttccactttctctctctctctctctctctctctctctctctttctctctttctatctctctgttcCAGCTGAGTATGAAGAAACTTAAGCCATGATTGCTGAGGGGTGTTTTGATTTATCTTGTTCTGCTACAATTAATAATGATGACAACAATAGCAATGATAAcgttaataaaaacaatagcaCAAGGAA

Function

symbol description
scrt2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within regulation of DNA damage response, signal transduction by p53 class mediator; regulation of neural precursor cell proliferation; and regulation of neuron apoptotic process. Is expressed in nervous system; spinal cord neural keel; spinal cord neural tube; and trigeminal placode. Orthologous to human SCRT2 (scratch family transcriptional repressor 2).

NR:

description
transcriptional repressor scratch 2-like

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K09219 SCRT; scratch

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039801638.1 True 5335 mRNA 0.42 2 11898818 11907613

Neighbor

gene id symbol gene type direction distance location
tcf15 tcf15,LOC104919924,LOC103354327,LOC100694468,LOC102295168 coding downstream 18198 11878352 ~ 11880620 (-)
LOC120558412 NA coding downstream 27357 11865707 ~ 11871461 (-)
slc13a3 slc13a3 coding downstream 35124 11855050 ~ 11863694 (-)
LOC120559814 NA coding downstream 50731 11844711 ~ 11848087 (-)
LOC120558426 LOC102786184,LOC101465378,LOC100693664 coding downstream 57245 11835663 ~ 11841573 (-)
slc52a3 slc52a3 coding upstream 32647 11940260 ~ 11945510 (-)
LOC120559253 ube2v1,LOC102081483,LOC108249566,LOC101171992,LOC106536681,LOC107391298 coding upstream 45562 11953175 ~ 11957391 (-)
LOC120559249 ptpn1 coding upstream 78797 11986410 ~ 11999445 (-)
LOC120559362 LOC102786474,LOC103354471 coding upstream 196278 12103891 ~ 12119146 (-)
LOC120558333 NA coding upstream 316691 12224304 ~ 12230288 (-)
G48911 NA non-coding downstream 283109 11607970 ~ 11615709 (-)
G48910 ankrd52 non-coding downstream 292204 11605733 ~ 11606614 (-)
G48907 ankrd52 non-coding downstream 298310 11600292 ~ 11600508 (-)
G48886 cs non-coding downstream 319830 11576539 ~ 11578988 (-)
G48903 LOC102783589,LOC107599367 non-coding downstream 325829 11564071 ~ 11572989 (-)
G49024 NA non-coding upstream 95654 12003267 ~ 12063255 (-)
G49084 NA non-coding upstream 212045 12119658 ~ 12121550 (-)
G49092 NA non-coding upstream 233322 12140935 ~ 12141414 (-)
G49112 NA non-coding upstream 239115 12146728 ~ 12147033 (-)
G49118 NA non-coding upstream 304130 12211743 ~ 12213541 (-)
srxn1 srxn1 other downstream 7679 11885965 ~ 11891139 (-)
LOC120558961 NA other downstream 390481 11503827 ~ 11508337 (-)
G48697 NA other downstream 1164931 10641405 ~ 10733887 (-)
G48523 NA other downstream 1872993 10024994 ~ 10025825 (-)
hipk1a LOC103359735 other downstream 2113577 9766311 ~ 9785241 (-)
peds1 LOC104919928,LOC103354371 other upstream 51766 11959379 ~ 11979035 (-)
G49083 LOC103354491,LOC102226477,LOC108232148 other upstream 219273 12126886 ~ 12128425 (-)
dnmt3ba NA other upstream 239801 12147414 ~ 12169209 (-)
ppdpfa LOC104933328,LOC101073585 other upstream 313121 12220734 ~ 12223028 (-)
fkbp1aa LOC100692950,LOC107391264,LOC103354614,LOC101168621 other upstream 481368 12388981 ~ 12391677 (-)

Expression


Co-expression Network