smc1a (smc1a)


Basic Information

Item Value
gene id smc1a
gene name smc1a
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 21808296 ~ 21823419 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039801663.1
TCGCGTCTATTTGATTAAGATTATGAAGCTATTTTGATTATTAAACTAAATATGCACTTCATAATGTGACATATGCATAGGCCAGCAATAGATTGAACAGAAAGGTTCATTTATTTGCGTGCATATTTCGTATTAGAGATTGCTTGTTCGGTAAACATTGGTTGttagcattagctagctaacattttACGAGCTAATATCCACTGCAGTTGTTTTCAGAACAGCGGCGCATATATAACGAAGATGGGTTATTTAAAACTGATAGAGATCGAAAACTTCAAGTCGTATAAAGGAAGACAGATCATTGGACCTTTTCATAAGTTCACTGCAATCATCGGACCCAATGGATCTGGAAAATCCAACCTTATGGATGCCATCAGCTTCGTGTTGGCGGAGAAGACCAGCAACCTGCGTGTGAAGACTCTGAAGGATCTAATCCATGGAGCACCTGTAGGGAAACCAGCTGCCAACAGAGCCTTTGTCAGCATGGTGTACCAGGAGGATAACGGAGAGGAACGCTCCTTCACAAGGGTCATTATTGGTTCCTCCTCTGAGTACCGCATCAACAACAAGGTGGTGGGCCTGCCTGAATACAGCGAAGAGCTGGAAAAACTTGGCATTTTGATCAAGGCTAGGAACTTCCTGGTTTTTCAGGGAGCTGTGGAGTCTATTGCCATGAAGAACCCCAAGGAGCGGACAGCTCTGTTTGAGGAAATCTCACGTTCTGGAGAGCTGGCCCAGGAGTACGAACGCAGGAAGAAGGAAATGGTGAAAGCAGAGGAGGACACACAGTTCAATTACCATCGTAAGAAAAACATTGCTGCTGAGCGCAAAGAAGCCAAgcaagagaaggaggagGCTGAGCGGTACCAGCGTCTGAAAGACGAAGTGGCCAGGGCTAGTGTTCAGTTGCAGCTCTTCAAGCTGTACCACAATGAGACTGAGATTGAGAAGCTGAATAAAGAGCTGGGCCAGCGGAACAAGGAGATTGATAAGGACCGTAAAAAGATGGACCATGTGGAGGAGGAGCTGAAGGACAAGAAGAAGGAGCTTGGCAGGCTGATGAGGGAGCAGCAGACTATTGAGAAAGAAATCAAAGAAAAAGACTCTGAGTTGAACCAAAAGAGGCCGCAGTACATCAAGGCCAAAGAgaacacctcacacaagatcAAGAAGCTTGAGGCAGCACGCAAGTCATTGCAAAATGCCCAGAAGATGTACAAGAAACGCAAGGGGGACATGGATGAGCTTGATAAAGAGATGAAGGCGGTGGAGCTGGCCAAGCAAGAGTTTGAGGAGCgcatggaggaggaggcgcAGAGCCAGGGCCAAGACCTGACCCTGGAGGAAAACCAGGTCAAGCAGTACCATCGTCTAAAGGAGGAGGCCAGTAAACGCGCTGCCACCCTGGCACAGGAGCTGGAGAAGTTCAACCGCGACCAGAAGGCCGACCAGGACCGCCTGGActtggaggagaggaagaaagtgGAGACAGAGGccaaaatcaaacaaaagaTCCGTGAAATTGAGGAAAACCAGAAACGCATTGAGAAATTAGAGGATTACATTACCACCAGCAGGCAGTCACTGGATGAGCAGAAGCGCATGGAGGAGGAGCTGACTGAGGAGGTGGAGATGGCCAAGAGGAGAATCGATGAGATCAACACGGAGCTTAACCAGGTAATGGAGCAACTGGGAGACGCCAGAATCGACAGGCAGGAGAACAGTCGCCAGCAGCGCAAGGCTGAGATCATGGAGAGTATCAAAAGACTCTATCCTGGCTCTGTGtatGGTCGTCTAATCGACCTGTGCCAGCCCACTCAGAAGAAGTATCAGATTGCTGTGACCAAAGTGTTGGGCAAAAACATGGACGCCATCATTGTTGACTCAGAGAAGACTGGCAGAGATTGTATTCAATACATCaaggagcagagaggagagcCCGAGACCTTCCTTCCTCTCGACTACCTCGAGGTGAAACCAACAGATGAGAAACTGAGGGAACTGCGAGGAGCCAAACTGGTGATTGATGTGATTCGCTATGAGCCTCCTCACATCAAGAAAGCCCTCCAGTATGCATGTGGCAACGCCCTGGTCTGTGAGAACGTAGAGGATGCACGAAGGATTGCTTTCGGGGGGCCTTACAGACACAAGACGGTAGCCCTGGACGGTACTCTGTTCCAGAAGTCTGGAGTCATCTCTGGAGGAGCCAGCGACCTGAAGGCCAAGGCCAGGCGCTGGGATGAGAAGGCAGTGGACAAGCTtaaggagaagaaagaaaaactcaCTGAAGAGCTCAAGGAGCAAATGAAGGCCAAGAGGAAGGAGGCAGAGCTGCGTCAGGTGCAGTCTCAGGCCCACGGTCTGCAGATGAGACTAAAGTACTCCCAGAGTGATCTGGAACAGACAAAAACCCGTCACCTCTCCCTCAACATGCAGGAGAAGTCTAAGCTAGAAAGTGAATTGGCAAACTTTGGCCCTCGCATTAACGACATCAAGAGGATCATCCAGTCCCGTGAGAGGGAGATCACCGACCTGCGAGACCGCATGAACCTGgTGGAGGATGAGGTGTTCATTGAGTTCTGTAAGGAGATTGGAGTGAGGAACATCAGAGAGTTTGAGGAGGAGAAGGTGAAGAGGCAGAATGAGATTGCAAAGAAGCGTCTTGAGTTTGAGACCCAGAAGACCCGCCTGGGTATCCAGGTAGACTATGAGAAGAATCAGCTGAAGGAGGACCAGGAGAAAGTCATGATGTGGGAGCAGACCGTCAAGAAGGACGAGGCTGAAATAGAGCGACTAAAGAAGGAGGAGCACAGACACATGAAGATCATTGATGAGACAATGGCCCAACTGCAGGACCTGAAGAACCAGCACCTCACCAAGAAATCTGAAGTCAATGATAAGAACCATGATATGGAGGAGATCCGCAAAAAACTGGGTGGCGCCAACAAGGAGTTGACTCAGCTCCAGAAGGAGGTCACAGCCATTGAGACCAAACTGGAGCAGAAGCGCAGTGACCGTCACAACTTGCTACAAGCCTGCAAAATGCAGGACATCAGGTTACCTCTTCATTCTGGAACAATGGATGATATCAGCCAGGGAGAGGGGAGCTCCCAGACAGAGGAGTCCAGCAGCCAGAGGACGTCCAGCAGTGTTCTCGCTAAAGAGGCTCTCATAGAGATCGACTACAGCAACCTGTCTGAAGACCTTAAGGATGTACTGTCAGAGGAAGAGATCAAGGCGGAGACGAACACGCTGCAGCAGCGTCTGAACGAGCAGCAGAGTATCCTACAGAGAATCAGCGCACCCAACATGAAGGCCATGGAGAAACTCGAGAGTGTCAGGGACAAGTTCCAAGAGACCAGTGACGAGTTTGAGGCTGCTCGTAAAAGAGCCAAGAAGGCCAAGCAAGCCTTTGAGCAGATCAAGAAGGAAAGGTTTGATCGTTTCAATAATTGTTTTGAGTCTGTGGCCACCAACATTGATGAGATCTACAAGGCTCTGTCACGCAACAGCAGTGCCCAGGCTTTCCTGGGCCCAGAAAACCCAGAGGAGCCATACCTGGATGGCATCAACTATAACTGTGTGGCTCCAGGAAAGAGGTTCAGACCCATGGACAACCTGTCCGGAGGAGAGAAGACTGTTGCTGCCCTGGCTCTGCTCTTTGCTATTCACAGCTACAAACCTGCCCCCTTCTTTGTCCTGGATGAGATTGACGCTGCTCTGGACAACACTAACATTGGCAAGGTGGCCAATTACATCAAAGACCAGTCGGTGCAGAACTTCCAGGCCATCGTCATTTCTCTGAAGGAGGAATTCTACACCAAGGCCGACTCACTCATCGGTGTTTATCCAGAGCAAGGAGATTGTGTCATCAGCAAAGTGCTTACTTTTGACCTCTCCCAGTATCCCGATGCCAACCCAAATCCAAATGAATAGGACGAGCACTCCCAACACCGGCATTTTGGCAAGTTGGAAGTTCCTCTGCTACTCACTCTGGATTGATAACATATTCAGTAGTCACAGATCATGTATTCAATAGGTCTTACGTGTTTTTTcctattgtttttttatgtttatgtatttttttttgggaataGTAGAGTAGTGAATAAgtgagtttttttgttgttgttccttATAGACTGCAACAACCAGGATGTATGTACATTTATAAAAGACCGCCCCTTCTCAATTCGGCCATACATGAGTGATTGTAATAATCCATAAAAATGAATTATAATCAAGTGAAAATGAGAGGGAATCAAACCTTTTTAACGGACTGTAGAATTTGTATCACGTAAAATGTGTCGAATTTACCTGAAACAAGTTTTtgttctcagagtttttatacTGTTTACGGTCCTCTTGTCATTGGTGTGCTTTAAAGCCTTTGCCTGGGATCTGTTGTGTGTACTAAAATatgtatttccattttcatgtgctaccttttcttttctttaaaaaaaaaaaaaaagaagcttaatCTGGAAACTGTTGTTACAATATGTTGGATACATTCCCGTGTGCTAAATAAAACCCCCTAGGCAGTGTTATAATGTGATCATGGAGCCAAAACTGTCATCAGAAAATGATGTCAAAGGAAATACATTCTGAATCAGCCTTAGGAAAATGGGAAAGTCAAGTGAGACTATTTTGTCAGGTCtgttttattgattgatttgcttcaataaataaaatttgAATTATTTAA

Function

symbol description
smc1a Predicted to enable DNA binding activity. Acts upstream of or within central nervous system development and developmental growth. Predicted to be located in chromosome. Predicted to be part of meiotic cohesin complex. Predicted to be active in nucleus. Is expressed in central nervous system and tail bud. Human ortholog(s) of this gene implicated in Cornelia de Lange syndrome 2 and developmental and epileptic encephalopathy. Orthologous to human SMC1A (structural maintenance of chromosomes 1A).

NR:

description
structural maintenance of chromosomes protein 1A

GO:

id name namespace
GO:0006310 DNA recombination biological_process
GO:0007064 mitotic sister chromatid cohesion biological_process
GO:0006281 DNA repair biological_process
GO:0008278 cohesin complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0003682 chromatin binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K06636 SMC1; structural maintenance of chromosome 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039801663.1 True 4714 mRNA 0.47 26 21808296 21823419

Neighbor

gene id symbol gene type direction distance location
c1ql4a LOC104932633,LOC102775687,LOC104956857,LOC103385087,LOC103368460 coding downstream 48855 21749085 ~ 21759441 (-)
neurod4 LOC103368461,LOC104956862,LOC101062304 coding downstream 79318 21726090 ~ 21728978 (-)
znf385a znf385a,LOC103368464,LOC102205706,LOC101482250,LOC102294796,LOC108244609 coding downstream 92894 21650403 ~ 21715402 (-)
LOC120559010 NA coding downstream 167347 21640338 ~ 21640949 (-)
tac3a tac3,LOC103368465 coding downstream 184834 21620971 ~ 21623462 (-)
l1cama l1cam coding upstream 5510 21828929 ~ 21878880 (-)
huwe1 NA coding upstream 74738 21898157 ~ 21957314 (-)
phf8 phf8,LOC102799568 coding upstream 134533 21957952 ~ 21969199 (-)
fam3a fam3a,LOC102798212 coding upstream 192915 22016334 ~ 22022646 (-)
ssr4 ssr4 coding upstream 241656 22065075 ~ 22076836 (-)
G51964 tmem9 non-coding downstream 27232 21779132 ~ 21781064 (-)
G51886 NA non-coding downstream 88173 21719192 ~ 21720123 (-)
G51885 NA non-coding downstream 89163 21717042 ~ 21719133 (-)
G51871 NA non-coding downstream 182417 21619719 ~ 21625879 (-)
G51864 NA non-coding downstream 230045 21577361 ~ 21578251 (-)
LOC120559723 NA non-coding upstream 72909 21896328 ~ 21897591 (-)
G51978 NA non-coding upstream 134042 21957461 ~ 21957711 (-)
G52009 NA non-coding upstream 223349 22046768 ~ 22047729 (-)
G52010 avpr2,LOC107591070,LOC107673055 non-coding upstream 230295 22053714 ~ 22055099 (-)
G52013 NA non-coding upstream 237293 22060712 ~ 22060924 (-)
esyt1a LOC104932417,LOC104956886,LOC103356920 other downstream 591577 21199340 ~ 21216719 (-)
fmnl3 fmnl3 other downstream 609253 21167904 ~ 21199043 (-)
LOC120558386 hoxc10,LOC100690382 other downstream 855778 20820171 ~ 20952518 (-)
LOC120558911 LOC103362803,LOC100693258 other downstream 1992978 19799205 ~ 19815318 (-)
kcnd3 kcnd3,LOC102776651,LOC102303593,LOC100697611,LOC101470631 other downstream 2730515 18945968 ~ 19077781 (-)
si:dkey-151g10.3 wnk3 other upstream 146633 21970052 ~ 22015043 (-)
LOC120559880 LOC104932903,LOC103358260,LOC104967532,LOC107390844 other upstream 399730 22223149 ~ 22229421 (-)
G52226 NA other upstream 706187 22529606 ~ 22530708 (-)
si:ch211-150o23.3 LOC103367744,LOC101075068 other upstream 1390679 23214098 ~ 23218900 (-)
G52501 eno1,LOC104965722,LOC103151087 other upstream 1485081 23308500 ~ 23319684 (-)

Expression


Co-expression Network