hm13 (hm13,LOC102793025)


Basic Information

Item Value
gene id hm13
gene name hm13,LOC102793025
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 40430115 ~ 40451414 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039801763.1
GTCTCCCTGGAAACCGCggcagagtgagacctcttcgcTTTGCTCCACTGTCTCTGCAGTGTTTTAGGAAACGTGGCcttaacagcagcagcatctgTACATGAATGAGAAACACACAGCGGCTCCAGTCTCCTCCTCTGCCCGTCTGCCAGTCAGCCCTGCCCGCGGTCCCGCCTGAAGAAGCCCGTCTCTGAAGAGAACCATGTCCGAGACAGAACCGGTCCCGGTCGCGGCCGCGGAGGCCCTGAACCTCACCGACTCCAACGGGACCCAGGCGCTCAACGCTTCGGCTAAATTCGTGGCGACTCCGGAGGGCACGGCGCTGGCATACGGCAGCCTGGTGTTCATGGCGCTGCTGCCCATCTTCTTCGGAGCCCTGCGGTCCGTCACTTGCTCCAAATCTAAGGAGCTCGGAGAAAATGATTACGATTCTGGGTTCAGAaatgcatcagaCATGCCAGAAACGATCACCGGTCGAGACGCGGCGAGGTTTCCCATTATCGCCAGCTGCACTCTGTTTGGGCTCTACCTCTTCTTCAAGGTATTTTCTCAAGAGTACATCAACCTGCTGCTGTCGGTCTACTTCTTTGGCCTGGGCGTCCTGGCTCTGTCCCACACTATGAGtCCTCTGATGTCCAGAATCTTTCCAGATTCTTTCTCAAACAAACAGTACCAGCTGCTCTTCACTCAGGGCGCTGAAGAGACCAAAGAAGaaaTAGTCAACTACGAGTTTGACACCAAGAACCTGGTGTGTCTGCTCATCAGCAGCGTGGTGGGGGTCTGGTACCTGCTCAAGAAGCACTGGATAGCCAATAACCTGTTTGGCCTGGCGTTTGCCCTGAACGGCGTGGAGCTGCTCCACCTGAACAACGTCAGCACCGGCTGCATCCTGCTGGGGGGGCTGTTCGTCTACGACGTCTTCTGGGTGTTTGGGACCAACGTCATGGTAACGGTTGCCAAGTCCTTTGAAGCCCCAATCAAATTGGTGTTTCCCCAGGACTTGTTGGAGCGAGGACTTGAAGCCAGTAACTTTGCCATGCTGGGTCTGGGAGACATCGTCATCCCCGGTATCTTCATCGCCCTGCTGCTGCGCTTCGACGTCAGCCTGAAGAAGAACAGCCGAACGTATTTCTACTCCAGTTTCCTGGCCTACATCTTCGGACTGGGCCTCACCATCTTCATCATGCACACCTTCAAACACGCACAGGTACGAGACAGGGGCTCCTAAACATGGAGGCATATG
>XM_039801764.1
CTCCCTGGAAACCGCggcagagtgagacctcttcgcTTTGCTCCACTGTCTCTGCAGTGTTTTAGGAAACGTGGCcttaacagcagcagcatctgTACATGAATGAGAAACACACAGCGGCTCCAGTCTCCTCCTCTGCCCGTCTGCCAGTCAGCCCTGCCCGCGGTCCCGCCTGAAGAAGCCCGTCTCTGAAGAGAACCATGTCCGAGACAGAACCGGTCCCGGTCGCGGCCGCGGAGGCCCTGAACCTCACCGACTCCAACGGGACCCAGGCGCTCAACGCTTCGGCTAAATTCGTGGCGACTCCGGAGGGCACGGCGCTGGCATACGGCAGCCTGGTGTTCATGGCGCTGCTGCCCATCTTCTTCGGAGCCCTGCGGTCCGTCACTTGCTCCAAATCTAAGaatgcatcagaCATGCCAGAAACGATCACCGGTCGAGACGCGGCGAGGTTTCCCATTATCGCCAGCTGCACTCTGTTTGGGCTCTACCTCTTCTTCAAGGTATTTTCTCAAGAGTACATCAACCTGCTGCTGTCGGTCTACTTCTTTGGCCTGGGCGTCCTGGCTCTGTCCCACACTATGAGtCCTCTGATGTCCAGAATCTTTCCAGATTCTTTCTCAAACAAACAGTACCAGCTGCTCTTCACTCAGGGCGCTGAAGAGACCAAAGAAGaaaTAGTCAACTACGAGTTTGACACCAAGAACCTGGTGTGTCTGCTCATCAGCAGCGTGGTGGGGGTCTGGTACCTGCTCAAGAAGCACTGGATAGCCAATAACCTGTTTGGCCTGGCGTTTGCCCTGAACGGCGTGGAGCTGCTCCACCTGAACAACGTCAGCACCGGCTGCATCCTGCTGGGGGGGCTGTTCGTCTACGACGTCTTCTGGGTGTTTGGGACCAACGTCATGGTAACGGTTGCCAAGTCCTTTGAAGCCCCAATCAAATTGGTGTTTCCCCAGGACTTGTTGGAGCGAGGACTTGAAGCCAGTAACTTTGCCATGCTGGGTCTGGGAGACATCGTCATCCCCGGTATCTTCATCGCCCTGCTGCTGCGCTTCGACGTCAGCCTGAAGAAGAACAGCCGAACGTATTTCTACTCCAGTTTCCTGGCCTACATCTTCGGACTGGGCCTCACCATCTTCATCATGCACACCTTCAAACACGCACAGGTACGAGACAGGGGCTCCTAAACATGGAGGCATATG

Function

symbol description
hm13 Predicted to enable aspartic endopeptidase activity, intramembrane cleaving. Acts upstream of or within regulation of neuron apoptotic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of cytoplasmic side of endoplasmic reticulum membrane and integral component of lumenal side of endoplasmic reticulum membrane. Is expressed in several structures, including alar plate midbrain region; axial mesoderm; digestive system; immature eye; and nervous system. Orthologous to human HM13 (histocompatibility minor 13).

NR:

description
PREDICTED: minor histocompatibility antigen H13 isoform X1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0043523 regulation of neuron apoptotic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004190 aspartic-type endopeptidase activity molecular_function

KEGG:

id description
K09595 HM13; minor histocompatibility antigen H13

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039801763.1 True 1243 mRNA 0.56 10 40430115 40451414
XM_039801764.1 False 1205 mRNA 0.56 9 40430117 40451414

Neighbor

gene id symbol gene type direction distance location
kcnd1 kcnd1 coding upstream 11411 39417332 ~ 40418704 (+)
ptpn18 NA coding upstream 243959 40160007 ~ 40186156 (+)
LOC120558439 LOC102207434,LOC101484296,LOC102207724,LOC106675709 coding upstream 511602 39905690 ~ 39918513 (+)
LOC120558740 NA coding upstream 532629 39895965 ~ 39897486 (+)
LOC120558738 LOC101484296,LOC106675709 coding upstream 618711 39808863 ~ 39811404 (+)
LOC120559775 NA coding downstream 13137 40464551 ~ 40464926 (+)
LOC120559596 NA coding downstream 17869 40469283 ~ 40469564 (+)
LOC120559068 NA coding downstream 45435 40496849 ~ 40515023 (+)
LOC120559371 NA coding downstream 221617 40673031 ~ 40691622 (+)
LOC120559372 NA coding downstream 253904 40705318 ~ 40710077 (+)
G56862 NA non-coding upstream 38900 40390374 ~ 40391215 (+)
G56853 NA non-coding upstream 50835 40293712 ~ 40379280 (+)
G56858 NA non-coding upstream 59314 40370183 ~ 40370801 (+)
G56832 NA non-coding upstream 115858 40156647 ~ 40314257 (+)
G56827 NA non-coding upstream 144737 40130440 ~ 40285378 (+)
G56849 NA non-coding downstream 1533 40452947 ~ 40574799 (+)
G56871 NA non-coding downstream 41735 40493149 ~ 40535009 (+)
LOC120559366 NA non-coding downstream 56283 40507697 ~ 40510459 (+)
G56881 NA non-coding downstream 90961 40542375 ~ 40562636 (+)
G56886 NA non-coding downstream 157150 40608564 ~ 40612303 (+)
G56818 NA other upstream 281495 40102385 ~ 40148620 (+)
G56819 NA other upstream 318827 40110458 ~ 40111288 (+)
G56807 NA other upstream 412800 40016985 ~ 40017315 (+)
G56127 LOC101484296,LOC102207998 other upstream 418298 39656659 ~ 40011817 (+)
G56112 NA other upstream 865847 39523146 ~ 39564268 (+)
LOC120559073 NA other downstream 648493 41099907 ~ 41103714 (+)
G56947 NA other downstream 668134 41119548 ~ 41136563 (+)
LOC120558563 NA other downstream 1988588 42440002 ~ 42440899 (+)
LOC120558567 NA other downstream 2020482 42471896 ~ 42473941 (+)
zgc:113363 LOC103367255 other downstream 2926932 43378346 ~ 43385991 (+)

Expression


Co-expression Network