tnnc1a (tnnc1,LOC107391089,LOC103147776,LOC100708228,LOC108232086,LOC105932306,LOC102236084)


Basic Information

Item Value
gene id tnnc1a
gene name tnnc1,LOC107391089,LOC103147776,LOC100708228,LOC108232086,LOC105932306,LOC102236084
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 15863022 ~ 15867186 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039801808.1
ccagacagagacaggctccAGCTATAAAACCCTCCCAGGATGGGGCCAGTGTCCTGCTCTGAGCTGGACAGTACCTCCTTCCTCTGTGCCAGGACGCCACCAGGACAGGCAGCAGACGAGCCTCCAACATGAACGACATCTACAAGGCAGCGGTTGAGCAGCTGACAGAAGAACAGAAAAATGAGTTCAAGGCCGCCTTTGACATCTTCGTACAAGATGCAGAAGATGGCTGCATCAGCACCAAGGAACTGGGGAAGGTGATGAGGATGTTAGGCCAGAACCCCACACCAGAGGAGCTGCAGGAGATGATTGATGAGGTGGATGAAGACGGGAGTGGGACGGTGGACTTTGACGAGTTCTTGGTCATGATGGTAAGGTGCATGAAGGACGACAGCAAAGGGAAGTCAGAGGAAGAACTGGCAGAGCTGTTTCGCATGTTTGACAAGAACGCAGATGGTTACATTGACCTGGACGAGCTGAAAATGATGCTGGAATCTACAGGAGAGGCAATTACTGAGGACGACATTGAGGAGCTGATGAAAGACGGGGACAAGAACAACGACGGCAAAATTGACTACGATGAGTTTTTGGAGTTCATGAAAGGAGTGGAGTAATCCTGAGCAAGAGAAGATCCAGagtgttatttttgtatttctctGTGACTCCACGGTCATCTGTGGAAAACTGGAATCTCAATTGGATGCCGCTGATAGAAACAATGGAACGACTTTGCAAGATTCAGTCGAATACTGTAGCTGAatgtttctgtatttttctaCCATCTCTTGCATCGTTGTAAATAGAGTTTGTAACTAGTTTTGGAGCCCATGTATACAGAATTTGTGTAAATGTATCCAAATTACTTGTATTTTCTATAGAGGCCACATAGTGTACCAGTTTAGCTGCTCGAAATATcaactttgtgtttgtttctgacTAAATCTTAACATTAAAGTGCCACAGCCAGTTTACAAATCATCTTACTGAGGGGCTGATGTTGTTTAGCTGGGCAGAAAATGTATGTGTGCACAAAGCAGAACATATCCATGACTCAACATAGTTTTACACCAGGCTCTGGTAGACTAATCATACTTTTAGAGCAATGTACTGGATCTAGTttgtatactgtactgtgttCTTATGTACACATTGTATacattactgtatgttttaGATACCCTTAGGACTTCTTATCCCCCTCTCATGCCCTGGAACTCCTGCATATTTCTACACGAAAAGTCAGTTTGGAATGTGCGACCATGTAATAAACAAGATGCATTTGTCGGAGCAgtca

Function

symbol description
tnnc1 Enables several functions, including calcium-dependent protein binding activity; cytoskeletal protein binding activity; and protein homodimerization activity. Involved in cardiac muscle contraction; regulation of muscle contraction; and ventricular cardiac muscle tissue morphogenesis. Part of cardiac Troponin complex. Implicated in dilated cardiomyopathy 1Z; hypertrophic cardiomyopathy; and hypertrophic cardiomyopathy 13.

NR:

description
troponin C, slow skeletal and cardiac muscles isoform X4

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K05865 TNNC1; troponin C, slow skeletal and cardiac muscles

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039801808.1 True 1294 mRNA 0.44 6 15863022 15867186

Neighbor

gene id symbol gene type direction distance location
bmp7b LOC103370837,LOC104958733 coding downstream 39216 15799940 ~ 15823806 (-)
irf10 LOC104919618,LOC103370835 coding downstream 64533 15792178 ~ 15798489 (-)
LOC120559871 LOC104919620,LOC103370834 coding downstream 105814 15741216 ~ 15757208 (-)
cdh26.1 NA coding downstream 124480 15727200 ~ 15738542 (-)
LOC120559538 NA coding downstream 138842 15715619 ~ 15724180 (-)
vgll4a LOC104958739,LOC104940214,LOC103368777 coding upstream 43412 15910598 ~ 15920543 (-)
raf1a raf1 coding upstream 70643 15937829 ~ 15951030 (-)
gp9 NA coding upstream 96371 15963557 ~ 15964905 (-)
LOC120558787 iqsec1,LOC101467973,LOC100710993,LOC102777856,LOC106948087,LOC103145094,LOC102305730 coding upstream 101374 15968560 ~ 16061896 (-)
nup210 NA coding upstream 199354 16066540 ~ 16095803 (-)
G50104 NA non-coding downstream 174595 15685011 ~ 15688427 (-)
G50101 NA non-coding downstream 197914 15664770 ~ 15665108 (-)
G50006 NA non-coding downstream 541101 15321709 ~ 15321921 (-)
G50005 NA non-coding downstream 543177 15319406 ~ 15319845 (-)
G50004 NA non-coding downstream 560385 15302398 ~ 15302637 (-)
G50136 NA non-coding upstream 12148 15879334 ~ 15896000 (-)
G50138 LOC104940213,LOC103368778,LOC102235665 non-coding upstream 19704 15886890 ~ 15890117 (-)
G50153 LOC101174347 non-coding upstream 62935 15930121 ~ 15933298 (-)
G50143 NA non-coding upstream 85344 15952530 ~ 15956672 (-)
G50230 NA non-coding upstream 419135 16286321 ~ 16379623 (-)
G49845 naca,LOC107737655,LOC106571941 other downstream 1009205 14845338 ~ 14853817 (-)
map3k12 LOC104930685,LOC103358642 other downstream 1311464 14539788 ~ 14551558 (-)
G49766 LOC103358643,LOC101487433,LOC103144045,LOC101072611,LOC101159823,LOC107094832 other downstream 1328417 14532124 ~ 14534605 (-)
LOC120558545 LOC104942567,LOC103358644 other downstream 1430028 14416336 ~ 14432994 (-)
LOC120558710 NA other downstream 1717800 14140380 ~ 14145222 (-)
G50217 fgd3,LOC104966710 other upstream 413858 16281044 ~ 16283856 (-)
LOC120559328 smim4 other upstream 1239648 17106834 ~ 17115047 (-)
G50712 birc7 other upstream 1820929 17688115 ~ 17689760 (-)
zbtb46 zbtb46,LOC102795869 other upstream 1967894 17835080 ~ 17895082 (-)
samd10b samd10,LOC107570869 other upstream 2107107 17974293 ~ 18101572 (-)

Expression


Co-expression Network