apex2 (apex2)


Basic Information

Item Value
gene id apex2
gene name apex2
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 12740741 ~ 12744322 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039801819.1
TTCCGGATGTTCACATTCTGGCTGGCTGCAGGTCAAACAACGTTAGTTTACCCTCCGTGGTTTTACACAATGAAGATCGTTACCTGGAACATAAATGGCATAAGAACTTTCAGAGGCGGAATTAAAAATGCTCTTGATTCACTGGACGCAGATATTATCTGTGTTCAAGAGACAAAAGTGACAAGAGACTTGCTTGATGAAAGAACTGCCATTGTTGACGGCTACAACTCCTATTTCAGCTTCAGTCGAGGACGCAGCGGCTATTCAGGGGTTGCCACTTACTGTAAAGACAGTGCCACTCCATTTGCTGCTGAGGAGGGTCTCACGGGTCTGCTGACCAACCATGAAGGGGCTGTTGGCTGCTATGGTGACCAGACTGAGTTCTGTGGCGAGGAGCTGCAGCTTTTGGACAATGAAGGACGAGCTGTTATCACACAGCACAGAATCATGTGTCAGGACAAAGAGCAAACTGTTACTGTAATCAATGTATACTGTCCACGGGCTGACCCTGAAAAACCGGAGCGAAAGCAGTTCAAACTGCAGTTCTACAAGTTGCTTCAGAGTCGGGCTGAAGCTATACTGAAAGATGGGAGCCATGTGATTGTTTTAGGAGATGTAAATACATCTCACCGGCAAATAGACCACTGTGACCCCAGTGATATCGATGATTTTGGTGAAAACCCCGGGAGGAAATGGCTGAATGGCTTTTTGCACAGTGGCAGACGAGAGGCAGAGGAAATGAATGAGCAGGAACCTGGTGAAGAATCTGAGGTAACCTCAACGGATCCCATCCACAGTGGAAAATTTGTGGATACCTTCCGCTATTTCCACCCAACTCGCACCAGCGCCTTCACATGCTGGTCCACTCTCACCGGAGCGCGGCAGACCAACTATGGCACACGCATTGACTACATATTCGCGGATTGCCAGCTAGCCAAGGAGCAGTTTGTGGCAGCAGACATCAGGCCAGAGGTGGAGGGGTCGGACCACTGCCCTGTGTGGGGGcaactgagctgctctctcctgccCAGCTCCAAGCCTCCCCCCCTCTGTACACGCTACCTGCCAGAGTTCGCTGGCAAGCAGCAGAAACTCTCCCGCTTCCTTGTTAAGGTGGACCAAAAATCAATTCAGCCTGAGCAGAGGGATGCGTTACCTGGATCtcaagaagaggaggaaaggagggagaatTTAAACCCTTCCAGAGCTGGGATCGTCGTTGGTAAAAAACGGTTATTAACATCGGACTGTGTTGTCCCAAAGGGGAAAAAGACTAAGACAGTCAAGACCTCTTCAAAGCCACAGGGCAGCCTCCTTTCCTTTTTCAAACCCAAAATCACAAATGTCGTTCCCTCTCCTGAAGCCTCGGTCAGGCAGTGTGAAAAAGCCCTCAGCGTGGATGAAGTTACCTCATCACAGAACTCTCAAAAAGCGTCCACAACTAGCGAGATCAGAAGCAGCGTACCTGTAGATACTGAGCCTGTCCACGGTTCACAACCGCAGCGCAGCAGCGGCCGCACCACAGAGGAAAGTGACAAACCaatgaagacacacacaacacctttAACCCCACAGCCCTCTGTGGGATGCTCAGATGCCAAGAAAGGGGCATCGTTAGGGTTTTGGAAGTCGGTGCTTCATGGAcctcccccgccccccccctgTAAGGTCCACGGGGAGCCCTGTGTGCTTCGTACTGTGAAAAAGGAGGGTCCAAACATGGGCAAACAGTTCTTTGTGTGTGCCCGTCCTCAGGGACATGCCTCCAACCCCGAAGCTCGGTGTAATTTCTTTGCTTGGGTCGACAAGGGGAAGTGACATGTTCACTGTCTGGACCACAAGTTGTTTTTTCCTgactcattattattattattattattattattattattatcatcaaaaCCTCTAGCTCAAGCAAGTATTGTAAGACTACTACAGAGATCAGATCATTTCACAGATTTTAATtgttgactgttttttttttttctaacatttaatattaaaagacaGTAGTATactttga

Function

symbol description
apex2 Predicted to enable DNA-(apurinic or apyrimidinic site) endonuclease activity; double-stranded DNA 3'-5' exodeoxyribonuclease activity; and phosphodiesterase I activity. Predicted to be involved in base-excision repair. Predicted to act upstream of or within DNA repair. Predicted to be located in mitochondrion. Predicted to be active in nucleus. Orthologous to human APEX2 (apurinic/apyrimidinic endodeoxyribonuclease 2).

NR:

description
DNA-(apurinic or apyrimidinic site) lyase 2

GO:

id name namespace
GO:0090305 nucleic acid phosphodiester bond hydrolysis biological_process
GO:0006281 DNA repair biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0004519 endonuclease activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K10772 APEX2; AP endonuclease 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039801819.1 True 2023 mRNA 0.48 6 12740741 12744322

Neighbor

gene id symbol gene type direction distance location
LOC120559801 slc38a5,LOC104951559 coding downstream 917 12729392 ~ 12739824 (-)
wasb was coding downstream 11972 12722054 ~ 12728769 (-)
LOC120558430 NA coding downstream 43684 12685286 ~ 12697057 (-)
LOC120558433 gpr173,LOC107086794,LOC102204197,LOC101466594,LOC108231911 coding downstream 61076 12674387 ~ 12679665 (-)
LOC120558830 LOC103354715,LOC100701974,LOC102202290,LOC102794242 coding downstream 105191 12614941 ~ 12635550 (-)
ccdc187 LOC103354907 coding upstream 152471 12896793 ~ 12915083 (-)
dhfr dhfr,LOC103371587 coding upstream 491894 13236216 ~ 13237110 (-)
LOC120558584 cdc42,LOC100697482,LOC101164400,LOC101073733,LOC107083933,LOC103465423,LOC100691174 coding upstream 498852 13243174 ~ 13249562 (-)
mfsd4ab mfsd4a,LOC105928558 coding upstream 515003 13259325 ~ 13262798 (-)
LOC120559884 NA coding upstream 548192 13292514 ~ 13299992 (-)
G49307 NA non-coding downstream 36636 12700429 ~ 12704105 (-)
LOC120558434 kdm5c,LOC101072313 non-coding downstream 79499 12604880 ~ 12661242 (-)
G49183 snph non-coding downstream 353517 12383502 ~ 12387224 (-)
G49180 NA non-coding downstream 359956 12376979 ~ 12380785 (-)
G49179 NA non-coding downstream 363765 12376288 ~ 12376976 (-)
G49372 NA non-coding upstream 24498 12768820 ~ 12771419 (-)
G49374 nt5dc2,LOC102799881 non-coding upstream 31595 12775917 ~ 12779320 (-)
G49384 NA non-coding upstream 93198 12837520 ~ 12839132 (-)
G49407 NA non-coding upstream 176679 12921001 ~ 12924328 (-)
G49447 LOC104955234 non-coding upstream 537665 13281987 ~ 13284250 (-)
prickle3 prickle3,LOC102790576 other downstream 300832 12415603 ~ 12439909 (-)
fkbp1aa LOC100692950,LOC107391264,LOC103354614,LOC101168621 other downstream 349064 12388981 ~ 12391677 (-)
ppdpfa LOC104933328,LOC101073585 other downstream 517713 12220734 ~ 12223028 (-)
dnmt3ba NA other downstream 571532 12147414 ~ 12169209 (-)
G49083 LOC103354491,LOC102226477,LOC108232148 other downstream 612316 12126886 ~ 12128425 (-)
camta1a LOC103354943,LOC102299287,LOC102779653,LOC102211199,LOC106922242,LOC104961361,LOC107390471,LOC108232047,LOC103144055 other upstream 180136 12924458 ~ 13221338 (-)
LOC120558587 NA other upstream 506664 13250986 ~ 13253608 (-)
LOC120558437 NA other upstream 564038 13308360 ~ 13312729 (-)
LOC120558461 NA other upstream 662463 13406785 ~ 13413178 (-)
zgc:66479 NA other upstream 1003081 13747403 ~ 13753866 (-)

Expression


Co-expression Network