wasb (was)


Basic Information

Item Value
gene id wasb
gene name was
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 12722054 ~ 12728769 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039801820.1
GTTGTCCGTTTCCTGCTTTCAGTTGATGTGTGCGCAGAACAGAGAAGAGAAACTTCCTTGAATGGAGAGCTTAGCATTCTGACAGCGTAGAGAGGACGCATTTCAACAAGTGCTGTACACATGAGTTTAAGATAAACTGGGAGATTTATTACGAGGACCATGAGCCGTGGATCTAAAACTAAAACGGAGAGCGCTTTGAGCTCTCTGCTGAGCCCACAGGAGACTGAGAAGTTGGAGGAGCTGCTGGGCAGAAGGTGTATTtCCATGGCCACTGCGGTAGCACAGCTGTTTATGGCTCTGCCTCACAGCCCTTCCATGTGGAGCTTGCAGCACACTGGAGTGGTGTGCTTCATCAAGGACAACCCTCAGCGCTCCTACTTCATACGCATGTTTGATTTGAAGACAGGGAGGCAGGTTTGGGAGCAGGAGCTCTACAACCAGATAGTTTACTCCTCGCCTCAGCCCTACTTCCATACCTTTGCTGCGGATGACTGCCAAGTCGGACTGAACTTTGCAGAGCAACAGGAAGCAGAAGCCTTCCAATATGCTGTCGAGGAAAAAATCAACCAGAGAAACAACCGTACAGATAGGAAACAGCGCCCCCCGCCGCCGAGTGACAGAGGTTCCCTGCCTCCAGTCCCACATGAAAAAGCTTCACCTGGCAGCCCTGGTTCTCTTCACATTGCCACAGTGGACATCCAAAACCCAGATATCCATGCTTCACGCTACCGCTCTGTCCCTTCACCGGCTGCTTCCTCCCTTCTGGTCGGCAAAGGAAAGAAGGACAAGAAGAAAGGGAAAAAGGGCCCTAAACTCTCCAAAGCAGACATAGGGGCACCCAGTGGATTTAAGCATGTTGGTCATGTGGGCTTCGATCTCAACAACCTGGACCCTGATCTGTGGAACCTGCTCTCCCAAGCTGGGATCAGTGAAGATGAGCTGAAGGATGAAAAGACCTCCCAGCTCATCTATAATGTCATCGAGCAGTCCGGAGGCATGGAGGCAGTCAAAAGGGAGGTGCACAGAGCTGGTGGACCTCCACCCCCTCCACCTGGCAGACAAGGGCCTCTGCCCCCAGTGCCAGGCTCCAGTCCCTCTGCTCCAGCCCCTCCACCTCCGAGAGGCCGCTCTGGCCCACTGCCTCCAATCCCAGGCCAGTCCCCGCGAGGAATCCCGCCCCCGCAATCGCCTCCTACACGCGGAGGCTTGCCACCCCCACCTCCGCCGACAAGCAGAGGTGGTCCTCCCCCGCCGCCGCCCCCAGCGCACTCTGCACCTTCTCACTTCCCCTCAGCGCCGTCCTCAAAGCCCTCTCCCGTCTCACCCTCTATCTCCTCCCACAAcctgcctcctcccctgccGCCGTCCGGCCCACAGCGCTCCGCGGGTTTCCCGCCTCCGGTCCCATCTACACCCAGCAGAGCAGGAGGAGgccctccacctccccctcctccGCCCCCTCCACCTTCCCAAACCATGTCTTCAAATTTCCCAGCTCCTTCTCGTGTTTCTGGTGGCCAACCCCCACCTCCTGTCCCTTCATCTGAAGGAGCGGGAGAAAGCAGAGGAGCTCTGCTGGATCAGATCCGACTGGGGAAGAAGCTCAGAAATGTGATAGACAGTCCTGATGCAGCTCCACCCACACCATCAGATTCAGGCGAGGGCATCGTTGGTGCCCTCATGATGGTCATGCAGAAGAGGAGTAAAGCCATCCATTCCTCTGaTGAAAGTGAAGATGAGGGTGGAGATGAAGACGACGATGACGACGAATGGGATGACTGATGACAGAAGTTCTCGTTTGCGTGGATTTAGTTCAACTGTGATTTTTGGTTATAAACCTCTGAATTGCAATACTGGTACATGTTTGATTTCAGGTTCAATAATTGATAATAAAACTGGAATATGA

Function

symbol description
was Enables SH3 domain binding activity; enzyme binding activity; and identical protein binding activity. Involved in several processes, including Cdc42 protein signal transduction; positive regulation of nucleobase-containing compound metabolic process; and regulation of actin filament organization. Located in several cellular components, including actin filament; cytosol; and site of double-strand break. Implicated in Wiskott-Aldrich syndrome; X-linked severe congenital neutropenia; and thrombocytopenia.

NR:

description
PREDICTED: wiskott-Aldrich syndrome protein isoform X1

GO:

id name namespace
GO:2000601 positive regulation of Arp2/3 complex-mediated actin nucleation biological_process
GO:0003779 actin binding molecular_function

KEGG:

id description
K05747 WAS; Wiskott-Aldrich syndrome protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039801820.1 True 1906 mRNA 0.55 11 12722054 12728769

Neighbor

gene id symbol gene type direction distance location
LOC120558430 NA coding downstream 24997 12685286 ~ 12697057 (-)
LOC120558433 gpr173,LOC107086794,LOC102204197,LOC101466594,LOC108231911 coding downstream 42389 12674387 ~ 12679665 (-)
LOC120558830 LOC103354715,LOC100701974,LOC102202290,LOC102794242 coding downstream 86504 12614941 ~ 12635550 (-)
gpkow gpkow,LOC103467951 coding downstream 210482 12504401 ~ 12511572 (-)
timm17b timm17b,LOC102791711 coding downstream 222589 12494005 ~ 12499465 (-)
LOC120559801 slc38a5,LOC104951559 coding upstream 623 12729392 ~ 12739824 (-)
apex2 apex2 coding upstream 11972 12740741 ~ 12744322 (-)
ccdc187 LOC103354907 coding upstream 168024 12896793 ~ 12915083 (-)
dhfr dhfr,LOC103371587 coding upstream 507447 13236216 ~ 13237110 (-)
LOC120558584 cdc42,LOC100697482,LOC101164400,LOC101073733,LOC107083933,LOC103465423,LOC100691174 coding upstream 514405 13243174 ~ 13249562 (-)
G49307 NA non-coding downstream 17949 12700429 ~ 12704105 (-)
LOC120558434 kdm5c,LOC101072313 non-coding downstream 60812 12604880 ~ 12661242 (-)
G49183 snph non-coding downstream 334830 12383502 ~ 12387224 (-)
G49180 NA non-coding downstream 341269 12376979 ~ 12380785 (-)
G49179 NA non-coding downstream 345078 12376288 ~ 12376976 (-)
G49372 NA non-coding upstream 40051 12768820 ~ 12771419 (-)
G49374 nt5dc2,LOC102799881 non-coding upstream 47148 12775917 ~ 12779320 (-)
G49384 NA non-coding upstream 108751 12837520 ~ 12839132 (-)
G49407 NA non-coding upstream 192232 12921001 ~ 12924328 (-)
G49447 LOC104955234 non-coding upstream 553218 13281987 ~ 13284250 (-)
prickle3 prickle3,LOC102790576 other downstream 282145 12415603 ~ 12439909 (-)
fkbp1aa LOC100692950,LOC107391264,LOC103354614,LOC101168621 other downstream 330377 12388981 ~ 12391677 (-)
ppdpfa LOC104933328,LOC101073585 other downstream 499026 12220734 ~ 12223028 (-)
dnmt3ba NA other downstream 552845 12147414 ~ 12169209 (-)
G49083 LOC103354491,LOC102226477,LOC108232148 other downstream 593629 12126886 ~ 12128425 (-)
camta1a LOC103354943,LOC102299287,LOC102779653,LOC102211199,LOC106922242,LOC104961361,LOC107390471,LOC108232047,LOC103144055 other upstream 195689 12924458 ~ 13221338 (-)
LOC120558587 NA other upstream 522217 13250986 ~ 13253608 (-)
LOC120558437 NA other upstream 579591 13308360 ~ 13312729 (-)
LOC120558461 NA other upstream 678016 13406785 ~ 13413178 (-)
zgc:66479 NA other upstream 1018634 13747403 ~ 13753866 (-)

Expression


Co-expression Network