srm (srm)


Basic Information

Item Value
gene id srm
gene name srm
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 24360952 ~ 24365511 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039801849.1
TTAGCTGTCAAACAACGGTCAAGTGTCACACATTGCCACACTTACAAACACGTTAGTACTATTATTTGTGGCCGTAGTCAGCTGTCATGGAGTACATAAAGGATGGGTGGTTTACGGAAACATGCACGCTATGGCCGGGGCAAGCGATGAGCCTCCAAGTGGAAGAAGTCCTCTACCACAAGaaatccaaatttcaagatGTTATGGTTTTCAAGAGTAAAACCTATGGGAATGTCTTGGTGCTGGATGGAGTGATACAATGCACAGAGAGAGATGAGTTTGCCTATCAAGAGATGATTGCCAACCTTCCCCTGTGCAGTCACCCTTGCCCCAAGAAGGTGCTGATTATTGGCGGTGGAGATGGTGGCGTGCTAAGGGAAGTGGTGAAGAATCCTCTGGTGGAATCGGTGGTTCTGTGTGAGATAGATGAGGATGTCATTAATGCATCCAAGAAGTTCCTCCCTGGGATGGCCAAAGGGTTTTACAGTCCCAAGCTCATCCTCCATGTTGGAGACGGCTTTGAATTCATGAAGAAGAACCAGGATGCCTTCGACATCATTATAACCGATTCCTCAGACCCTGTTGgaCCTGCTGAGAGTTTGTTCAAGGAGTCTTACTATCAACTGATGAAGGCAGCGTTGAGAAACGGTGGAATTCTTTGTTCCCAGGGAGAGTGTCAATGGCTCCATTTGGAGCTGATAAAGGAGATGCGAACCTTCTGCAAGACCCTATTCCCTGTGGTGGACTATGCCTACAGCACCATCCCAACATATCCCAGTGGGCAAATTGGATTCATGCTCTGCAGTACAAATCCTGAAACAAATTTCATGGAACCAATGAGAGCGCTGTCAAAAGAAGAAATGGAAAATATGAACCTTAGATATTACAACCCTGAAATTCACAAAGCATCCTTCGTCCTGCCTGAGTTTGCAAAAAagGTACTCAATGAAGCATGACCAAAAACAACATACCACTATGTTCAACCTCTAGCTGGCACTCAGACCACAGATCAACAACCTTGTTCTACGGCTTCTTCACCTCCTCAACGCAGTTCAGCACCACTGAAGAGAGTAGCCTCCTAAAGATTTTAGGGCTGGGGGTACCTAATAATCAGTGGGTGGGAATGCACTGAGTGATACAGTGAAAGTGTTTGTTCCAATGTTTTCTTCCTTCCAGTCTTACACGCTcttggtgtttttatttattttactgatgtatggttgttttttgttttttttgtcatttttactcTGTAATTGTTTTATCAGCGTTTTGCGGAGAGCAATTTAATGGGCTGGGCTGAGTGGGGAAGAGCATTGCCGTCAAATCTGACCTCACTCTGAAACTGTGTACTGTCTATCGGATTCAATGCATCTACACATTATGTAATACATTACATACCACATAGAGGTTGTACATGTAATGTATTGCTGTACTTTTATGTGTAATATTTAATATCGGTTTGTGCTCATAGGAAAATACACAGTTGCCATCATGTCATGACTGTATATTCAGAATACTAATGTGTCCTCTATACACATGAACCCTATAGTGCCTGAAATTGGTTgttgttgatttaaaaaaaaaaaagacttgttaTGTATCTATTAAAGTGTACCGGGCACATATAGTGGCCTAGAAGAAAGCTCTAAGTGTCAATAGTTGAGAAAAGtgtcccttttaaaaaaaatcaccaatTTAACATTAAATAAATCTGCTCAGCTTTGACTTATCAATTTGATATGGAATTATTTGTTACAgttttaaaatgcaaattaagcAAACATGTAAAATTGCACTGGAGCTTTGCAATGTGGGAAATGTAAATTAATTATGCAGTGATTAACTTTCTGTATTGGGTATTGACTACCTGTGGTAGGCTTGGACTGTGGTGAGCCTGTATGCGGAGTCATTACATGGTCAAACATCTTCAGTTAGTACCTGTTACAAGTCTACTTAGAATCGGTTGAGAAATGGTGTCAAATACCTGAGCAATGaatttatgacttttataaGAACTGTAATAAATTGGTAACATAAAATGGT

Function

symbol description
srm Predicted to enable spermidine synthase activity. Acts upstream of or within spermidine biosynthetic process. Is expressed in forebrain; immature eye; optic tectum; and tail bud. Orthologous to human SRM (spermidine synthase).

NR:

description
spermidine synthase isoform X2

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016740 transferase activity molecular_function

KEGG:

id description
K00797 speE, SRM, SPE3; spermidine synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039801849.1 True 2046 mRNA 0.41 8 24360952 24365511

Neighbor

gene id symbol gene type direction distance location
cort cort,LOC101173302,LOC102226263,LOC100698045,LOC103363980 coding downstream 2941 24356788 ~ 24358011 (-)
pex14 pex14 coding downstream 41949 24266174 ~ 24319003 (-)
tardbpa tardbp,LOC106534252 coding downstream 339080 24008001 ~ 24021872 (-)
lzic lzic coding downstream 466768 23891799 ~ 23894184 (-)
her9 hes4,LOC102778090 coding downstream 658523 23700576 ~ 23702429 (-)
exosc10 exosc10,LOC102796841 coding upstream 4907 24370418 ~ 24384608 (-)
cntn3a.2 LOC103363983,LOC100703160,LOC104954126,LOC102301181,LOC102197109 coding upstream 24686 24390197 ~ 24427068 (-)
si:dkey-178k16.1 epb41l1,LOC103363988,LOC102294250,LOC102199659 coding upstream 269260 24634771 ~ 24671798 (-)
edn3b NA coding upstream 323088 24688599 ~ 24697982 (-)
fam217ba fam217b,LOC102078452 coding upstream 350211 24715722 ~ 24719674 (-)
G52732 NA non-coding downstream 33976 24325020 ~ 24326976 (-)
G52706 NA non-coding downstream 252238 24108484 ~ 24108714 (-)
G52692 NA non-coding downstream 347701 24012963 ~ 24013251 (-)
G52679 pgd,LOC102797219 non-coding downstream 359320 23995628 ~ 24001632 (-)
G52746 NA non-coding upstream 1638 24367149 ~ 24367469 (-)
G52765 NA non-coding upstream 20392 24385903 ~ 24386621 (-)
G52776 chl1,LOC101079354 non-coding upstream 100523 24466034 ~ 24468019 (-)
G52818 NA non-coding upstream 340006 24705517 ~ 24706004 (-)
G52883 NA non-coding upstream 555205 24920716 ~ 24945315 (-)
masp2 masp2,LOC106536928,LOC103357864,LOC107086886 other downstream 21496 24335149 ~ 24339456 (-)
G52501 eno1,LOC104965722,LOC103151087 other downstream 1041268 23308500 ~ 23319684 (-)
si:ch211-150o23.3 LOC103367744,LOC101075068 other downstream 1142052 23214098 ~ 23218900 (-)
G52226 NA other downstream 1830244 22529606 ~ 22530708 (-)
LOC120559880 LOC104932903,LOC103358260,LOC104967532,LOC107390844 other downstream 2131531 22223149 ~ 22229421 (-)
phactr3a LOC100701276,LOC107550338,LOC107551495,LOC104947949,LOC103365918,LOC106955159 other upstream 384920 24750431 ~ 24785005 (-)
acot7 acot7,LOC102782704 other upstream 1545244 25910755 ~ 25972322 (-)
emc1 NA other upstream 1771487 26136998 ~ 26147245 (-)
G53196 NA other upstream 1847482 26212993 ~ 26214882 (-)
LOC120559114 LOC101164642,LOC104966947,LOC100690915,LOC104926428,LOC102195969,LOC101062277 other upstream 2026501 26392012 ~ 26402310 (-)

Expression


Co-expression Network