tcea2 (LOC103367858,LOC108232081)


Basic Information

Item Value
gene id tcea2
gene name LOC103367858,LOC108232081
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 6406363 ~ 6427923 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039801854.1
caactcccagcGTCCCACAGTGACACAACAACAAACGAGAGGCAGGCAGCAGCtgggagagaaggagacagggCAGACAGACTGCGTGAAGAGAAGCAGCAAGAGAAGAGACCGGGCCGGACAGGTTTTCTTCCATCCATGGGGGTTTCCACCGCGGCACAGGCGGACAACTGACGGGGAGAAATCCGCTCAAACATGGCTAAAAACCAGGAAGTGGAGCGCATCGCGAAAAAGCTGGATAAAATGGTGCACAAGAAGAACACGGATGGAGCTCTCGACCTGCTGAGAGAACTAAAGAACATCAAGATGTCTCTGGAGACCCTGCAGtccACCAGAGTTGGGATGTCGGTGAACGCGGTGAGGAAACACAGTTCAGAGGAAGAAGTTCAGACTCTGGCCAAAGCTCTCATCAAGTCCTGGAAGAAACTGCTGGACGGTGCAGAGGGGAAGtctgaggagaaggagaagaagaaggaaggcTCTCCTGTGAGGTCCTCGTCCACCTCCAAGGACTCCGGCAGCAGTGAGAAAAGCAAGAAGTTCGGAGAGTCGCCCACGCCCACCACACCCACCACACCCACCACACCCACCTCCCCCACTACTCCAACCCTTCCCCCGCGGGTCACCTCCTTCCCCCCGGCCCCCGTCACCACCGACAACGTGCGGAACAAGTGTCGAGAGCTTCTGGTTGCAGCGCTGCAGACTGACGatgaCCACAAGACCATTGGAGCGGACTGTGAGCACCTTGCGGCACAAATTGAAGAGGAGATCTTCCAGGAGTTTAAGTCAACAGACATTAAATATAAAACTCGTCTACGAAGCCGAATCTCCAACCTTAAGGATCAGAAGAATCCCGACCTGCGGCGTAACGTCCTGTGTGGAAGCATCTCGGCCCGACGCATCGCCTCGATGACCGCCGAGGAGATGGCGAGCGCAGAGCTGAAGCAGATGAGGGAGACTCTGACCAAAGAGTCGATCAGAGAGCATCAGCTGTCGAAGGTCGGTGGAACTGAGACAGACATGTTCATCTGCAACAAGTGTCACGGAAAGAGCTGCTCATACACACaggtgCAGATCCGCAGCGCTGATGAGCCCATGACCACCTTTGTGTTGTGTAACAGCTGCGGCAACCGATGGAAGtTCTGCTGAagaggacgtgtgtgtgtgtgttattctaTCGTGAAGACAACCGACTGAAGTGAATTGAATTTGGATTTCAAAAGAAtgaatttagttttttgtttttattttgtatgatttctttttatacataaaagtaaaaaagctGTAATATATTTCGAGAAAAGATATGCCACTTAATGTTGTGTATATGGTTTCATTAGTTTTCTATGCAGCACTTGGAGTTTATTGCTTATGCTAGATGAAGCTTTAATTCACAAGTAGGCCTTGCCATGTTGTGCTTCCACAATATTTTGCCCTTAACATTTCTATTAAAGTTGCTCTTGGATTACGA

Function

NR:

description
PREDICTED: transcription elongation factor A protein 2-like

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0032784 regulation of DNA-templated transcription, elongation biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039801854.1 True 1474 mRNA 0.50 11 6406363 6427923

Neighbor

gene id symbol gene type direction distance location
LOC120559579 LOC103144399 coding downstream 664410 5738321 ~ 5741953 (-)
LOC120558499 LOC105418166,LOC101068103,LOC108412963,LOC106522608,LOC108431938,LOC105419408,LOC106674638,LOC108415465 coding downstream 1187650 5207222 ~ 5218713 (-)
efhd2 efhd2,LOC102781412 coding downstream 1700823 4677700 ~ 4705540 (-)
LOC120559100 LOC100709480,LOC103374188,LOC101478014,LOC102305352,LOC102202239,LOC102794305 coding downstream 2025302 4283188 ~ 4381061 (-)
asxl1 LOC102292987,LOC107098928 coding downstream 2400715 3983273 ~ 4005648 (-)
LOC120558793 NA coding upstream 388784 6816707 ~ 6823536 (-)
LOC120558600 NA coding upstream 399762 6827685 ~ 6838050 (-)
LOC120558601 NA coding upstream 418112 6846035 ~ 6848369 (-)
LOC120558623 NA coding upstream 868643 7296566 ~ 7299426 (-)
LOC120558800 NA coding upstream 892102 7320025 ~ 7359408 (-)
G47485 NA non-coding downstream 32820 6366360 ~ 6373543 (-)
G47459 NA non-coding downstream 169525 6232908 ~ 6236838 (-)
G47447 NA non-coding downstream 264474 6118484 ~ 6141889 (-)
G47439 NA non-coding downstream 369865 6036255 ~ 6036498 (-)
G47432 NA non-coding downstream 423507 5982391 ~ 5982856 (-)
G47498 NA non-coding upstream 143969 6571892 ~ 6572124 (-)
G47641 NA non-coding upstream 398330 6826253 ~ 6827520 (-)
LOC120558809 NA non-coding upstream 621825 7049748 ~ 7270452 (-)
G47677 NA non-coding upstream 623391 7051314 ~ 7051795 (-)
G47693 NA non-coding upstream 752185 7180108 ~ 7266048 (-)
G47254 NA other downstream 1673078 4732796 ~ 4733285 (-)
G47252 NA other downstream 1675222 4730501 ~ 4731141 (-)
dedd dedd,LOC103374682 other downstream 1784527 4591447 ~ 4621836 (-)
G47059 LOC102202574 other downstream 2449981 3955604 ~ 3956382 (-)
G47058 NA other downstream 2450834 3955026 ~ 3955529 (-)
G47624 NA other upstream 268522 6696445 ~ 6721729 (-)
G47638 NA other upstream 376218 6804141 ~ 6805706 (-)
LOC120558602 NA other upstream 527281 6955204 ~ 7036375 (-)
G47814 NA other upstream 1057504 7485427 ~ 7498802 (-)
G47934 LOC103363443,LOC106920718,LOC105016959,LOC102211704,LOC108251018 other upstream 1344013 7771936 ~ 8187551 (-)

Expression


Co-expression Network