LOC120559852 (LOC104955226,LOC102789706,LOC101477062)


Basic Information

Item Value
gene id LOC120559852
gene name LOC104955226,LOC102789706,LOC101477062
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 13510651 ~ 13519559 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039801895.1
TGAAAGTGGCCGCATATTGTCCGGGGGGACAGATGGTTTCTGTCTTGATTAAGTTTTAATTTTCCTGACGGGAAAAGCTGGCAGGCTTTGCTCGTCGGAGGGACCCTGCTGTGTTCACAGACAGACCAACGTATCTCTCGCATCTCATTCTGCCCTAAAAAAGGTCGCCTGTAGTCCAGGTAGAGGAGCTCAAGTGTGAAAGTGCAGGTTTTCACCGAGCTGACTGCTCTCTCAGCTGGGAGTTATTTAGCAGCAGACGGGCGTCTcgcgacttttttttttttgtgtctctcGCTTGTACACCGCTCTGAATTGAGGCAGAACACTTCTGAAACTGGTGGATCATATCAACTGCAAACTTTTGCATCCTGGCTGAAACGATCACAGTATGCATGATGTAAACTCAGACACTGGAGGCTTCTGCAGCGGCTTATCATTCATATCAATAACCTGAGCAGAGGCAAGATGATGCTGAACATGTTGGCCCGGCCATTACACTGGAGCCTCCTGCTTCTTTGTATAGTAGGCTTCTGCAGCCAGCTTGTGTCCACTGGCAACCAAAGCTCCCGAGGACAGACAGGGTCGTCGCAAGAGAGGACAGGGACTTGTGAAGTGGTTGCTGCTCATCGTTGCTGCAATAAGAACAAGATTGAGGAACGCTCTCAAACTGTCAAGTGCTCCTGCTTCCCAGGACAGGTGGCGGGGACAACGAGGGCTCTGCCCTCTTGTGTGGAAGCCTCTAttgttcatcacaagtggtggTGTAAAATGGAGCCGTGTCTGGAAGGGGAAGAGTGCCGAGTTCTCCCTGACCTCACTGGTTGGTCATGCATCTCTGGAAATAAAGTAAAGACCACAAAGattATACGAACTGAGAATATTCTTCTATTTTCTCACTTGGAGAAAATCGAAAGTGGTGGAGTGTCGTTCCGGTGCACTCCGGCTGCACTACACCCCTGTATACTTGATACAacaacgactaccttcgaagtcactgttccattatctttaatgtgactactattgccactgttcatcacaccccca
>XM_039801896.1
TGAAAGTGGCCGCATATTGTCCGGGGGGACAGATGGTTTCTGTCTTGATTAAGTTTTAATTTTCCTGACGGGAAAAGCTGGCAGGCTTTGCTCGTCGGAGGGACCCTGCTGTGTTCACAGACAGACCAACGTATCTCTCGCATCTCATTCTGCCCTAAAAAAGGTCGCCTGTAGTCCAGGTAGAGGAGCTCAAGTGTGAAAGTGCAGGTTTTCACCGAGCTGACTGCTCTCTCAGCTGGGAGTTATTTAGCAGCAGACGGGCGTCTcgcgacttttttttttttgtgtctctcGCTTGTACACCGCTCTGAATTGAGGCAGAACACTTCTGAAACTGGTGGATCATATCAACTGCAAACTTTTGCATCCTGGCTGAAACGATCACAGTATGCATGATGTAAACTCAGACACTGGAGGCTTCTGCAGCGGCTTATCATTCATATCAATAACCTGAGCAGAGGCAAGATGATGCTGAACATGTTGGCCCGGCCATTACACTGGAGCCTCCTGCTTCTTTGTATAGTAGGCTTCTGCAGCCAGCTTGTGTCCACTGGCAACCAAAGCTCCCGAGGACAGACAGGGTCGTCGCAAGAGAGGACAGGGACTTGTGAAGTGGTTGCTGCTCATCGTTGCTGCAATAAGAACAAGATTGAGGAACGCTCTCAAACTGTCAAGTGCTCCTGCTTCCCAGGACAGGTGGCGGGGACAACGAGGGCTCTGCCCTCTTGTGTGGAAGCCTCTAttgttcatcacaagtggtggTGTAAAATGGAGCCGTGTCTGGAAGGGGAAGAGTGCCGAGTTCTCCCTGACCTCACTGGTTGGTCATGCATCTCTGGAAATAAAGTAAAGACCACAAAGGTGGCACGGTAGCAAGACAGGAGCTCCATCTAATCAGTACAAGCCTGTTCCGGCCTGGTGCAGTCACCTTAAGTAACACTGGACTCTGAAGACAGTGAACGCCCCATCAGATAGTGCAAAGAACAATATAGATTTAATTAGATATCTCCTGGCTAAGCTTTAAACTGCAGGAACACATTATTTTAATTTCCCTTTTGTTTGAACACAATTTTGGTTAGGGTTAATCCCATGCAGTGGACAATCTAATAGCAACTGACTTAAGATAAAATGAAGCAGCACCCTTAAGCAGTCCAAACAGGCAGCGACTGCAAAGGACTGTATCCGTATATTTCCGTGCTTGATATGCTGGGCACTATGTGATGCACTCAATCAAAGTTTGGACGGGGCCTGCTGGCAGACACTTAAAAAGAGATTTTGTGGATTTTCCGGCAGCAGAATGTGAATCCAGTCAGTTGCTTGTGACTCTCTCCGCCGATCAAAGCAGAGGACCACAAATACTGAGGAATTTATGATTGTGTAGCATTTGTAAGCAATGCTGTCCTGTAGACTTACTCTGAGCATTGTAAAGAGGTCCCATCCCTTTGGACAACTCCTTACCACAAAGAGGCACCCTCCCAAACacgcctgcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacatacacactgcttTTCATCTCCACTGCTTGGACAGGCCACCACCTGCAAGGCTGTGATGGCATGCACACAAGCATGAAGCGCTGATGCAAAAcaaggactgtttgaaatgctAATCATgggcagaaaagggagagagagaagagaagaggagcttCTTCACTGCTGAGAGTATTTACATCATGCTTTTGTTTGTCTCTCTAAACTGAATACTCCTGTGGAGGGAACTCCGTTCATAGTAATGATAGCAGCATTGCAGATTCTCTGCCTTGAAGCAAATTGTAGCCACCAACAGAAAAGAATATTTACCGTTATTGCATTATATCAGTTGTCCTCTTCATATGAATAATATTCCTTCTGGACTACCCCTCTTTTATCTCTTAAGTTCAATCAACTTTTAGCATTTTACCTTTCCAATAAAGAGACATTTTATAATAACACTAATAGAGCAACTGAAAATCATCCTATCTGAGGCATCAGACTGTGCTAGTTGAAGGCAGCTGAATTCTAAGCACTTTGCTCAACATTTACTTAATGCAATCATGCCGTATGGTTGTCATGGTACTGACAAGATTCTTCACTGAGCGGTCACGCACTCCAAGGCACTTTATGCATGGCTTTGCTTTGTAACTTTGTAACTTctgattattatttcatgttagAAGTGCTGCATTTTAAGATTCATAAAATGAACGGTATTGAATGTGTCAAATATTCTGGAAAACCCCCTCCTCTAAATCAATGATAATCTGCCTTTGGTATTGAATGGCAATGCTTTTGTAGATTCACTGAATGCTTATCGTATAACAAATTGTGATTCTGTTCATGGACATCGTAAACAGCAGCAATGTCTCCAACATAACTGTGTGTCATATTGTAGCTACTCTTATAAACCCATTAGAAGCTTGTGATGCAGCTGCTGACAACGGTATTATAAGCAGGGTCTGACAAGATCAGCCACATAAAGTAGTAAGATGGCGGTTCAACATATTGTTTACAAAAGACCTTGGGTGTATTTCATTTGAGAGCTGACTGCAAAACAGGGGGATTCAATACTCCTTACAATATAATACAAGCCTCTCCATCCATGCCATAAATGACTATAAATGATGACTAATAAACATTACCTTCACCTCTCTGGCTCAAGATACAgctgttgtattgtattgtaccCTGTTTAGGATTTAAAGGAGTGCTACAATGACCTGCGCTTAAACCGCAATTATTCAGTATTATTTCAGAACATCTGGACTAGATACATTATTAAACATATAACTCCCCCTTTTAACTGTTCAAaccatttttcaagcaaaaaaatcACATGGTCATCATGGTTCCAGCATCTCagttgcttttctttgtctaatTTGATGGTAAATTTAATATCTTTAGGTTTTGGAACTTAAATCAGGCAAAATAAGCACACTAAAGACATCAACCTGGGCTTAATGAAATCGTGATAGGCAATTTAATTTTCTGGCAATATTTAGTCCGAACGATTAATCACAAAGAATCACGACAGATGAAATGATAATGACAATAATCGTTTGTTGTTTTCATAATTTGTCACTTTTGATTTTGTTCAGTTTTGGCAACTGAAGCTTCTCTTAAATGCTGGCCAAAATCTTGTTAATGATGTAAATACCAACCCTGAGAATAAACCAATAAATACAAACATAATACAAAGTATTCCTCTATATGCAAATAGATTGAGATTGGTATATTTTTCGTACTTTTCAGTGACTGCTGTAATTTTATTAGGCTTCAAAATGAAGTTTACACAGAGGAGTTAGAATTGTTTTATTACTGCAAGTTAAAATCAGGAGCTGGTTGGGCTTCTGTAGAAGTCCAACAATAGTCTTATCTCTTATTCCTGTTCATTGAACCATTCCCCATcttatatttatgtattcataTTGTACAGAAATGCAGAGCTCATTGAAGTTAAAGGTCCCAAGATTCCCTGACTGTTATAAAATCTAAGTAGTTCTGGACAAGAAAGCTTTGGAAAGATCAGGAACTCATGGAGCTACATTTCCTCACCGACTCAGAAGCTGCAGAAAAGATGAACCCACTGGTAATTGAACTGAATAAGTTGACGTGTGACTTTATTACCATCCATACactc

Function

NR:

description
PREDICTED: protein FAM19A4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039801895.1 False 1047 mRNA 0.49 5 13513857 13519559
XM_039801896.1 True 3707 mRNA 0.41 5 13510651 13519559

Neighbor

gene id symbol gene type direction distance location
LOC120559332 NA coding downstream 62887 13445243 ~ 13447764 (-)
LOC120559331 LOC104955230,LOC106567269,LOC101065054 coding downstream 66705 13437589 ~ 13443946 (-)
nfascb NA coding downstream 75145 13414941 ~ 13435506 (-)
LOC120558460 NA coding downstream 104467 13396016 ~ 13406184 (-)
LOC120559526 NA coding downstream 166698 13339493 ~ 13343953 (-)
LOC120559206 LOC103355075,LOC100698283,LOC101476589 coding upstream 925 13520484 ~ 13527197 (-)
lmod3 lmod3 coding upstream 12320 13531879 ~ 13534915 (-)
LOC120559773 frmd4b,LOC101475124,LOC102291948,LOC102193657,LOC102787077 coding upstream 15842 13535401 ~ 13559677 (-)
mdfic2 NA coding upstream 89758 13609317 ~ 13616046 (-)
LOC120559678 LOC102200381 coding upstream 97317 13616876 ~ 13633635 (-)
G49514 NA non-coding downstream 77556 13432519 ~ 13433095 (-)
LOC120558464 NA non-coding downstream 131788 13376627 ~ 13378863 (-)
LOC120558462 NA non-coding downstream 142278 13366263 ~ 13368373 (-)
LOC120558463 NA non-coding downstream 152846 13355117 ~ 13357805 (-)
G49447 LOC104955234 non-coding downstream 226401 13281987 ~ 13284250 (-)
G49624 oard1,LOC106909399 non-coding upstream 135972 13655531 ~ 13657376 (-)
G49673 NA non-coding upstream 660781 14180340 ~ 14184391 (-)
G49675 NA non-coding upstream 686030 14205589 ~ 14205824 (-)
G49676 NA non-coding upstream 689013 14208572 ~ 14208852 (-)
G49677 NA non-coding upstream 692651 14212210 ~ 14212497 (-)
LOC120558461 NA other downstream 97473 13406785 ~ 13413178 (-)
LOC120558437 NA other downstream 197922 13308360 ~ 13312729 (-)
LOC120558587 NA other downstream 257043 13250986 ~ 13253608 (-)
camta1a LOC103354943,LOC102299287,LOC102779653,LOC102211199,LOC106922242,LOC104961361,LOC107390471,LOC108232047,LOC103144055 other downstream 289313 12924458 ~ 13221338 (-)
prickle3 prickle3,LOC102790576 other downstream 1070742 12415603 ~ 12439909 (-)
zgc:66479 NA other upstream 227844 13747403 ~ 13753866 (-)
smim29 LOC104942556,LOC104932788,LOC105416285,LOC106572343,LOC105022745 other upstream 520176 14039735 ~ 14125823 (-)
LOC120558710 NA other upstream 620821 14140380 ~ 14145222 (-)
LOC120558545 LOC104942567,LOC103358644 other upstream 896777 14416336 ~ 14432994 (-)
G49766 LOC103358643,LOC101487433,LOC103144045,LOC101072611,LOC101159823,LOC107094832 other upstream 1012565 14532124 ~ 14534605 (-)

Expression


Co-expression Network