LOC120559871 (LOC104919620,LOC103370834)


Basic Information

Item Value
gene id LOC120559871
gene name LOC104919620,LOC103370834
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 15741216 ~ 15757208 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039801934.1
TAAGCAGCACAGCTCTTTACAACCCTACCGAGCCTGTCTGACAGAGAGAGCAagacagcgtgtgtgtgtgtgtttgtgagtagAGAGGCAGCCAAGATGAGAGTGTGAAGCAGTGAGAGGGAAAACCTAGAAAAAACAGCAAAGGCGATCagaaaggggaggagggagacagCAAATACAGCAAAAAGGCATAGCAGAGTAGATAGTCTTTGATAGTCCTGGTGCCAAAGTCAAGACATGCAATGACTAGATGACCAGCCACTACACACACCAGCATCCTGTCCTGGAGCCTTGACAGGAGGGGACAAGAAAAatccacacacactcaaaggCAAAACACTCTCTTCAACCAGTCCCACATCCACTGGATCATGTCGTCTACTGGGTCAACCAACCACAACAAACGTCTGGCATCGGAGAAAGACAACTCTCAGCGGGTTTTGGACAATGATTCTGCTCAGCACCTGAAGCTGAAGGAAAGACGGCGCTTTTTTGAAGAGGTCTACCAGCATGACGTGGACAACTACCTGCCCTCTGCTAACCTGCAGGTCGACTGCAGGAAACCCCCCATGGGAAGTATCTCTTCTATGGAGGTAAATGTGGATGTCCTGGAGCAGATGGACCTGATGGACTTCTCTGACCAGGAGGCCCTGGACGTGTTCCTCAACTCAGGCTCAGGAGCAGATGAGGGAGCGCTGGCATCTCCACTACCAGAGGGtgaggatgaagaagaggatgaggaggatgaagatgcgGAGGTTGTGTACAGGGAGCGCGCACCTTTGAAACGGCAAGCTGAAGTTCAACGCGGCTCAAAGTCACGCATGTCCTCTACATCATCGGGTTCCAGTGATACCAGCGGGGGTGGAGTCGACACACCCGTGATCCAGTCGGACGATGAAGAAGTCCATGCCGACACTCTGCTGCTAACCTCTGTTCCCCATACCAGGGATGAAGAAACAGAGGAGGAAGACGAGGAGGAAAGATGCCTTGCAACTAAATCTCCATAAAGACTGCATTTAACTCTCTGTAGACATATATATAGAGTTGGTAAAAAGAGCCTGAGATCTCTCTGTCTCATTTGCAATTCTTTCTTTTGGGGAAAACCTTAGCATGGTTGACCTGGCTGTGATTTTCTGCATCTTTTGAATGTTTCCCTGAGTACATTGGATTTTTCATTACAACCTATTTTTCCTATTACGTGTTAAACACTTGATAGTAATGACTTGTTTTTGAAACTCTTAGCAATGGTGTCTCAAGTTTCTTGAAATATGTGCGCAAACAACATGAGTCATCCCATTCCAATGCACTAACATGTTCTGGCTGGGATACAAAATAGTCAGTTCAAGATTCAATGCCAGAGGGAAACCACCCTCCAGCAAGGATGAAGTTGTATCATGaatcttctttttttgtgtttcagaAGATCAACATGAGGCAGAAATCATGCGCAGTGAACAAAACCCAACAAAAAGTTGAATTTCTTTAACAACATCATCATGAATCTATTGCCACATGCATGTGCAAACTATTTACAGTATCATGAATGGAACTCTATTTGTAAATGCATGCATTTTGTTCTTGTTAGTGACTACATTATGTTTTCAATTATGTAACTGCAGAGTGTTGCATTACTTAAAGTTACTCCTCACCTGCATGTAAGGTGTGTAATTtgggagttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggatggtaAATATTACAATACAAGAGGTATTCCCCTGGTGCTTCTTTCAAAGCAACCTTTTTTACAGTGTTAATCATGATGTGTATCTCTTCCCCACTTAAACATCTCACCatgaaatcaataaaaattaaacaaagGTTAAAACCACTAAATTTA
>XM_039801935.1
TAAGCAGCACAGCTCTTTACAACCCTACCGAGCCTGTCTGACAGAGAGAGCAagacagcgtgtgtgtgtgtgtttgtgagtagAGAGGCAGCCAAGATGAGAGTGTGAAGCAGTGAGAGGGAAAACCTAGAAAAAACAGCAAAGGCGATCagaaaggggaggagggagacagCAAATACAGCAAAAAGGCATAGCAGAGTAGATAGTCTTTGATAGTCCTGGTGCCAAAGTCAAGACATGCAATGACTAGATGACCAGCCACTACACACACCAGCATCCTGTCCTGGAGCCTTGACAGGAGGGGACAAGAAAAatccacacacactcaaaggCAAAACACTCTCTTCAACCAGTCCCACATCCACTGGATCATGTCGTCTACTGGGTCAACCAACCACAACAAACGTCTGGCATCGGAGAAAGACAACTCTCAGCGGGTTTTGGACAATGATTCTGCTCAGCACCTGAAGCTGAAGGAAAGACGGCGCTTTTTTGAAGAGGTCTACCAGCATGACGTGGACAACTACCTGCCCTCTGCTAACCTGCAGGTCGACTGCAGGAAACCCCCCATGGGAAGTATCTCTTCTATGGAGGTAAATGTGGATGTCCTGGAGCAGATGGACCTGATGGACTTCTCTGACCAGGAGGCCCTGGACGTGTTCCTCAACTCAGGCTCAGGAGCAGATGAGGGAGCGCTGGCATCTCCACTACCAGaAGATCAACATGAGGCAGAAATCATGCGCAGTGAACAAAACCCAACAAAAAGTTGAATTTCTTTAACAACATCATCATGAATCTATTGCCACATGCATGTGCAAACTATTTACAGTATCATGAATGGAACTCTATTTGTAAATGCATGCATTTTGTTCTTGTTAGTGACTACATTATGTTTTCAATTATGTAACTGCAGAGTGTTGCATTACTTAAAGTTACTCCTCACCTGCATGTAAGGTGTGTAATTtgggagttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggatggtaAATATTACAATACAAGAGGTATTCCCCTGGTGCTTCTTTCAAAGCAACCTTTTTTACAGTGTTAATCATGATGTGTATCTCTTCCCCACTTAAACATCTCACCatgaaatcaataaaaattaaacaaagGTTAAAACCACTAAATTTA

Function

NR:

description
PREDICTED: dysbindin

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039801934.1 True 1939 mRNA 0.45 4 15741216 15757208
XM_039801935.1 False 1230 mRNA 0.45 4 15741216 15757208

Neighbor

gene id symbol gene type direction distance location
cdh26.1 NA coding downstream 2674 15727200 ~ 15738542 (-)
LOC120559538 NA coding downstream 17036 15715619 ~ 15724180 (-)
LOC120558694 taf4 coding downstream 59501 15667178 ~ 15681715 (-)
ogfr NA coding downstream 639316 15095189 ~ 15101900 (-)
col9a3 NA coding downstream 647178 15076829 ~ 15094038 (-)
irf10 LOC104919618,LOC103370835 coding upstream 34970 15792178 ~ 15798489 (-)
bmp7b LOC103370837,LOC104958733 coding upstream 42732 15799940 ~ 15823806 (-)
tnnc1a tnnc1,LOC107391089,LOC103147776,LOC100708228,LOC108232086,LOC105932306,LOC102236084 coding upstream 105814 15863022 ~ 15867186 (-)
vgll4a LOC104958739,LOC104940214,LOC103368777 coding upstream 153390 15910598 ~ 15920543 (-)
raf1a raf1 coding upstream 180621 15937829 ~ 15951030 (-)
G50104 NA non-coding downstream 52789 15685011 ~ 15688427 (-)
G50101 NA non-coding downstream 76108 15664770 ~ 15665108 (-)
G50006 NA non-coding downstream 419295 15321709 ~ 15321921 (-)
G50005 NA non-coding downstream 421371 15319406 ~ 15319845 (-)
G50004 NA non-coding downstream 438579 15302398 ~ 15302637 (-)
G50136 NA non-coding upstream 122126 15879334 ~ 15896000 (-)
G50138 LOC104940213,LOC103368778,LOC102235665 non-coding upstream 129682 15886890 ~ 15890117 (-)
G50153 LOC101174347 non-coding upstream 172913 15930121 ~ 15933298 (-)
G50143 NA non-coding upstream 195322 15952530 ~ 15956672 (-)
G50230 NA non-coding upstream 529113 16286321 ~ 16379623 (-)
G49845 naca,LOC107737655,LOC106571941 other downstream 887399 14845338 ~ 14853817 (-)
map3k12 LOC104930685,LOC103358642 other downstream 1189658 14539788 ~ 14551558 (-)
G49766 LOC103358643,LOC101487433,LOC103144045,LOC101072611,LOC101159823,LOC107094832 other downstream 1206611 14532124 ~ 14534605 (-)
LOC120558545 LOC104942567,LOC103358644 other downstream 1308222 14416336 ~ 14432994 (-)
LOC120558710 NA other downstream 1595994 14140380 ~ 14145222 (-)
G50217 fgd3,LOC104966710 other upstream 523836 16281044 ~ 16283856 (-)
LOC120559328 smim4 other upstream 1349626 17106834 ~ 17115047 (-)
G50712 birc7 other upstream 1930907 17688115 ~ 17689760 (-)
zbtb46 zbtb46,LOC102795869 other upstream 2077872 17835080 ~ 17895082 (-)
samd10b samd10,LOC107570869 other upstream 2217085 17974293 ~ 18101572 (-)

Expression


Co-expression Network