racgap1 (racgap1)


Basic Information

Item Value
gene id racgap1
gene name racgap1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 11521321 ~ 11531078 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039801982.1
TGAAACGCGCTCATTGTAGCTTCAGCTGCGGAAGGATGTGGATAAAGATACAACAAGGTGGtcgctaaaaaaataaatagaagaaaaaggcaaaaagcagTGCGTTCACTGCGTTGAACACTACCAAAGGGGGTTTGCTGTCCAACATTTATCCAGTACTGAAACGGGTCTTCAGTTACAGCCCATCATGCAGAGTGCTGTGTTAAGCCTCCAGAGCTTATATGAAAAGCTGAGGACGCAAGCTGACCTTCTCAGCGAGAACATTGAACCCAACTTTATCCAGCTAGCACAAAACTTTGATGACTGCCGTCGCAAATGGCTGAGTGCAGAGCAGGATCTGGGCTCTTGCAAAGAGGTGCTCACCAAAGCAGAGACCGAGAGGGCAGCCTTGGAGGTCAAACTGAAACATGCTCGCAACCAAGTAGATGTGGAGATCCGGCGCAGACAGAAGGCTGAGTCTGACTGTGAGAAGTTGGACCGTCAAATTCAGTTGATCCGGGACCTCCTCACCAGTGAGGGATCCTCCAACAGCATCCAGCTGAGTGCAGAGCAGCGCTCAGCTCTAGCCTTTCTGAACGCAAACTGCCAGGCAGCAGCCAGTCAGAATACCAGCCGGAGACTAATGACGATAGATGAGTCAGCCTCCATCTTGTCAGATATCAGCTACGACAAAACGGATGACTCTCTTGATTGGGACTCCTCCAATGTGAGGACAGTGCGACtcaagaaaagagaaaagaggCGCTCCTCAAGAAATCATGTCGATGGTCCTCCTCTTGCCTCCAAACGGTCTCGGTCAACAGGCAGAACTTCAGAGAGGGGAAATGAGACCCTCGTGACAAAGACCACAGTGACGGTCCCTGCAAATGGAGGACCTGTTGAGGCTGTTTCAACCATCGAGTCTGTTCCTTACTGGACTCGCAGCAGGAGAAAGACTGCTGCCATGGAGTGGGACTCTGAATCTGTCAAGTCTGACGATGTCTTCAAGCAGCCTGGCAACCCCGAGGGAGAGCGAAAAGCAGCGCCCAGCACTCCGCAGAGCCACGGGGCTGTCCGTCTTCACGAGTTTGTCTCCAAAACTGTCATTAAGCCTGAATCGTGCGTACCCTGTGGAAAGAGGATCAAGTTTGGCAAGATTTCACTGAAGTGCCGTGACTGCAGGGTGGTCTCGCACCCCGAGTGTCGCGAGCGTTGCCCTCTGCCATGCATCCCCAACATGGGTGCCACACCGGTCAAAATCGGAGAGGGTGTGCTCGCAGACTACGTCCATAACACATCCCCCATGATTCCTCCTCTCGTAGTCCACTGTATTAGTGAGATCGAGCAGAGGGGCCTGCATGAGGCGGGACTGTACCGTCTGTCCGGTGCTGATCGCACAGTGAAGGACCTGAAGGAAAAGTTTCTCCGCAGCAAAACGGTTCCCGTGCTCAGCAAGGTGGATGATATCCATGCCATAACTGGCCTCCTCAAGGACTTTCTGAGGAACCTCAAGGAGCCTCTTCTCACCTTCCGCCTCAACCGTACATTCATGGAGGCAGCCgAGGTTTCAGATGACGACAACAGCGTAGCTCTGATGTACCAAACCATCAGTGACCTGCCGCAGGCCAACAGAGACACACTGGCTTTCTTAGTCCTCCACCTTCAGAGAGTTGCTGACAGTTTGGACACAAAGATGGACATCAGTAACTTGGCTCGAGTGTTTGGGCCAACTATTTTGGGTCATGCCGTTCCCAACCCTGACCCAATGACAATCCTACAGGATACCAAACGACAACCTAAGGTTGTGGAGCGTCTGTTGGCGCTGCCGCCAGATTACTGGGGCCAGTTTGTGATGTTAGAAAGCGAGCCGCCCAACTTGGACCACCTGATAATCGAGAACGCAAACTGCTATGCCACCCCCGAGAGAATGAGCATGCTGGGGCCTCTGACTACTCCGGAGCACCAGCTCAATAAAACCCCCTCCTCCAGCTCCTTGTCTCAGCGCATGAAGTCCACTCTGACACCCAGATTTGGGAGCAAGAGTAAATCAGCAGTCGGATTCTCTCGCCAAGGAAAATTCTTTGCATCTCCACTCCTTAAATAATCCAAAGTAGCTACACTAAACCCTTGATGGATACTGCAATAACAACCATTACTACTTATTTTACTGCATAACGCATAACATGGTACTGCTTTGATAATTGCTATAAATATCTCCATCTTAGCCTTTTTTATAatctttttaatatttcacAATCGTAAGAGTTGTATTTTGATGATTTTATGTGTTTGTATAAGGATACTTTTAGATTTTCCTATCTATGCACACTTGTGTGTCTTTAGAGCTGATGCTTTTGCCAAATGTTTAACAAGACATTCTCATTTCACCTCTTAACACATGTAACGTACTGTATATTACTCCTTTTGAGAAATGTGCGCATAGGTGAAAATATGTACAGATTGATTGTGACCTAATTTTCTCTCGCCAGTTTTTCAACTCATGTGTCACTCAGAAGTTGAAGAACTGATTCTAAGGCATTTCATTCTAGTTTGTAATTGAATGTGTGACTGCTAGTAACAgtgtcttttactttttttttaaaaatttttttgtgATGTTTGTATTTCAATTCTATTAAGTTTTGATTGTTTTCATCCTCCAGCGAATTGTGCTGTAACTGTTTACAAACTCACATGCCCTTTCCTTTTCATACTGGAACTACAAACAGTAGTTGTAAGACCTCGAGGCAGATCTTCTATCATATGTAAGCTTGACTGGGTTATTGGTAATTGGCATTgatctctttaaaaaaaaaaacgaggggGGGGGGCGGTTGTTGAGGGCAAAAATGTATCTTCGCTGCCATTGTGTTTGCACTGCCAGTGATCGTCGTCAGGAACATTTTTCGCTGGTTTATGGCCCATGCTTTAATCTCTACCAGTTAATTTTGCTCCTCCTTTGCAATATTTATTGCTCTGTGTAATGTTTGTACAGTACAGCATGCTTAGGAGCAATCCCATACAGAAGGCAATTACTTTTGTAAGATTAGCCAGTTAAGTTGCCGTGGCATTATTTGATTACCTATTAGCATAAGTTTTGTACACAAGTAATTTCTCTAAAATTCATGTAACttataaaatacatttctaacCTTTACAAAAATCTCATGTGATTTCTGTTAAATGCTCTGTGAGGTTTCCTATCTTTATGAATCCAATAATTGGAGGATGGGAGGATGATTCTGTGTTCCAGGTTAGCACATACGGTACATAAATGTCTTGTGGTAGGCTCTA

Function

symbol description
racgap1 Acts upstream of or within microtubule cytoskeleton organization and mitotic cytokinesis. Is expressed in blastoderm; blastodisc; brain; nervous system; and proliferative region. Orthologous to human RACGAP1 (Rac GTPase activating protein 1).

NR:

description
rac GTPase-activating protein 1

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K16733 RACGAP1, Tum; Rac GTPase-activating protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039801982.1 True 3273 mRNA 0.46 17 11521321 11531078

Neighbor

gene id symbol gene type direction distance location
bin2a LOC102783891 coding downstream 2833 11510733 ~ 11518488 (-)
pou6f1 pou6f1,LOC102796073 coding downstream 23257 11487065 ~ 11498064 (-)
tfcp2 tfcp2 coding downstream 43405 11464498 ~ 11477916 (-)
csrnp2 csrnp2,LOC102795091 coding downstream 57195 11455743 ~ 11464126 (-)
itga5 LOC103365860,LOC103385260 coding downstream 99860 11382182 ~ 11421461 (-)
si:dkey-190g6.2 coq10a,LOC106917050,LOC103139137,LOC102221461 coding upstream 49215 11580293 ~ 11585970 (-)
zgc:56699 NA coding upstream 165878 11696956 ~ 11699952 (-)
cd63 NA coding upstream 185541 11716619 ~ 11731081 (-)
ormdl2 ormdl2,LOC101074775,LOC101464341 coding upstream 215229 11746307 ~ 11750609 (-)
spats2 spats2,LOC102777081 coding upstream 253725 11784803 ~ 11806444 (-)
G48891 NA non-coding downstream 82620 11438272 ~ 11438701 (-)
G48761 NA non-coding downstream 299842 11220997 ~ 11221479 (-)
G48756 NA non-coding downstream 312704 11208394 ~ 11208617 (-)
G48749 NA non-coding downstream 371939 11149074 ~ 11149382 (-)
LOC120558410 NA non-coding downstream 656276 10834886 ~ 10865045 (-)
G48903 LOC102783589,LOC107599367 non-coding upstream 32993 11564071 ~ 11572989 (-)
G48886 cs non-coding upstream 45461 11576539 ~ 11578988 (-)
G48907 ankrd52 non-coding upstream 69214 11600292 ~ 11600508 (-)
G48910 ankrd52 non-coding upstream 74655 11605733 ~ 11606614 (-)
G48911 NA non-coding upstream 76892 11607970 ~ 11615709 (-)
LOC120558961 NA other downstream 12984 11503827 ~ 11508337 (-)
G48697 NA other downstream 787434 10641405 ~ 10733887 (-)
G48523 NA other downstream 1495496 10024994 ~ 10025825 (-)
hipk1a LOC103359735 other downstream 1736080 9766311 ~ 9785241 (-)
c1qtnf12 fam132a other downstream 1767635 9727874 ~ 9753686 (-)
srxn1 srxn1 other upstream 354887 11885965 ~ 11891139 (-)
peds1 LOC104919928,LOC103354371 other upstream 428301 11959379 ~ 11979035 (-)
G49083 LOC103354491,LOC102226477,LOC108232148 other upstream 595808 12126886 ~ 12128425 (-)
dnmt3ba NA other upstream 616336 12147414 ~ 12169209 (-)
ppdpfa LOC104933328,LOC101073585 other upstream 689656 12220734 ~ 12223028 (-)

Expression


Co-expression Network