sypb (syp,LOC104932998)


Basic Information

Item Value
gene id sypb
gene name syp,LOC104932998
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 12452487 ~ 12468003 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039802011.1
TCACACCTCCTCGCCCAGTTCGTGACGCAGTCCAGCTCTTCCTCCTGGGCGTCTTCCTCCCCTGGGCTGTTCCGGATGAGACGCCTCCCTCCCTCCGCCCCTCTGATCCTCTTATCAGCGAGTAAGCGGCCAAGATGGATGTTGTAAACCAGTTGGTGGCCCAAGGGCAGTTCACGGTACTCAAACAACCGTTGGGATTTATCAAAATTCTACAGTGGATCTTTGCAATCTTCGCCTTCTCGACATGTGGCAGTTACTCTGGCATGTTGAAGATGAGCGTGGAGTGTAAAAACCGGTCGGAGAGTGACCTAGGCATAGAAGTAGAATTTGAATATCCGTTCAGgCTCCATCAGGTTTACTTTGATGCCCCCACCTGTAAGGGAGGGAAGCCTGAGCGTGTATTCCTGGTCGGGGACTACTCCTCCTCAGCTGAGTTCTTTGTCACCATCGGTGTCTTTACCTTCCTCTACTCTATGGCAGCCCTCTCTGTATACTGTTTCTTACTGGAGAAGTACCGTGAAAACGCCAAGGGGTGCAAGATTGACTTTGTTGTGTCAGCGGTATTTGCCTTCATGTGGCTGGTGTCCTCATGTGCTTGGGCTAAAGGCCTGTCTGATGTGAAAACAGCCACCGATCCAGAGAAGGTCATCACTTTCATCGAAGCCTGTGACGAACAAGAGAATCGCTGCCGTGAAGTCTACGACCCCAAGGTCTCCGGCCTCAACACTTCTGTGGCTTTTGGTTTCATCAACCTGATCCTGTGGATAGGAAACCTGTGGTTTGTGTTCAAGGAGACCGGCTGGATGGCTGCCTTCTCTGGAACATACGTCCCATCACAAGAAAAGCAGCCCGCCCCTGAATCCTTTGACCAGGGAGGCTATGCCCAGCAGGACCCCTACGCCGGCTCCCAGGGAGGGTACCAGCCTGAATACGGCCAGCAGGGAGGCTACACTGAGGAAGGAGGATACAGTCAGGGCTATGAGCAGCAGCCCACCTCCTACTCTAATCAAATGTGAGCCTGTCCAGTCAAACCACAGCTGCAGGATGGGTGACATTGTGATTTTGGAGTGTGGCTCTCGACCACTGCCTGCATTTCCACActcctctgtttgtctgtttgtgtatctgtgagTTGACAGGCGGAGGGAGGGAGCCATGGAGGGCAGGAACTGGTGGGGTCATGGGGAGGGGGACACCACAGGGGAAATGGGTCTTTGCTGTAACATGATGTTTATTCTCGTGATGTATTTAACTGTAGAAGACAACAGAGGATTGTCTGTTTGGTTATACGAGAAAAACTTGAATACAAATACCAAAACATTCGTTGACGAACATTTAAGAGAAATCTTGTAATGGAAAAGACTTACatttatggagaaaaaaaacaattgtagTAATATTTAACTTGGGAGAATGTATTTGTCTGTGCTGTGTAAATATCAACATGCTGATATATATGATTATATGTACACAGTTGAATAATTGTGCACTCCATAAAAGTTGTTATACAACAAATGTTGAGCACAGAGTTATTCAATTGCATTTACTTTGGTTCTGTTTAGGAGCTCACATAGTTTAGCCTTTGCCCTTCAATCCCCTTAAATTATTCATATACcataatgttttcatttattcatcTCAGAGtctataaaaaatttttttttacttttttaaatttgagaTTTATAAAAGGGGGGGCTGCTAAAAATATGATGGcaaatgttgaaagaaaaacagaattatCAATATATAAAGTGAGCAGAGTCATTTATAGTAATAACAGTGAATATGTGGTTAGCAGGTTTTTAGTATTTTGTTTCAacgttatgtttttatatatatttttccatcAAATATCACTATCAAGCGAGGATGAACTCTTCTGATACACACAACATTTTAAATCCTGACGTATAAGATCAAAAATTGCATCAGGTTAAGAAAATTAGTGAGCATGGTAGCATCTCATATTTGCTGTGCTGTTTCAGAAACCGCTGTAGTGTGCTATCAGTATGAAAATTGTGAATCGGGGCAGTGAACAACAGATTTAGcgacgtgtgtgtttgtttattgtttggATTTATGTAATGGGATCAAACTAATGTTGTCAATGAATCCTCGTCCTGTTTTGATCACCTGTTATGTGGTCCGGAAAGTTGTAAGACAGAGTCATATAGTTTTTTAACTGGTGTTTCTATTCTATCACACTGTAATCAGTGACGTACATACTCACGTTAACATTAACTGTAGGCAAATGAGAATAAAGTATATTAAAGGACTaaacacatattattattatgaggcGATCTGAACAATATGTCTCCATATATACTTCTCCTGCATCCTCAATTTCCTTCTTTATCCCTTCTGTTTCTAAAGGTGAATTTACTGCACGCATCCTTATAACCTAAAGCATCCCTACACATATTTGAGAGGCTGAGGCTTAAAGCTGCAGGAAGGTTAGACTACACAGTAATACTGTGCTATGTTTGATCCATCATAGTGTTTACGGCACAGCACATACAGCAGCTCTGCTATATTCTACTCAAAGCCCAAAGTTAAGTGCTGCAATAGTTACTTTATCCAGATATAAATACCTATCCTACTGCCAATCCTCTGTTTGGATATACAAGATCGTGTTTGCCAAATGGTTAGAGATGTGTCTTGATTGGTAGTTTTGCTTCCACAGTCCTCATCGGGATGAATTGTTGTCCATCTCCCGTATATATCGATCCATTGCACAGCCTTGGAttcactctttttttaaatttttttatcagGTTTATTTGATTCAGGCGGTGTAGAAGCACCTggctttctctcttcctctagTCCTCCCCAcatgttttttcttctctctctctctgtctttctctctctttcactgtaGCTCTTATAAATATGCTGAAATGAAATATACTCTGTCGTTAGTGGTGAATGATGTCTTGTGATACTCTCTCTACGCCCTTGGATAGTGCTGTGTTTATTGTGTATGATGTATTCATATTAGTATTTATGATAATGATaagtcagagaaaaaaaaatataagacTCTCCAGAATTCTGCTGTATTCTTATTATATGGGATCATgtgaaacaaaaatgaaataaacttgaaatTATTCTGTTGAA

Function

symbol description
syp Enables cholesterol binding activity. Predicted to be involved in endocytosis; regulation of neuronal synaptic plasticity; and regulation of opioid receptor signaling pathway. Predicted to act upstream of or within cellular response to organic substance. Located in neuron projection. Implicated in non-syndromic X-linked intellectual disability 96. Biomarker of Alzheimer's disease.

NR:

description
PREDICTED: synaptophysin

GO:

id name namespace
GO:0006810 transport biological_process
GO:0008021 synaptic vesicle cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039802011.1 True 3132 mRNA 0.42 7 12452487 12468003

Neighbor

gene id symbol gene type direction distance location
plp2 LOC106572444 coding downstream 2819 12440017 ~ 12449668 (-)
fam110a NA coding downstream 37115 12412221 ~ 12415372 (-)
mfsd2al2 LOC102788240,LOC103355362,LOC102198151 coding downstream 42339 12392255 ~ 12410148 (-)
samd10a LOC105935172,LOC103139076,LOC103354595,LOC107095944 coding downstream 120495 12323485 ~ 12331992 (-)
uckl1a LOC103355333,LOC101079427,LOC103139074,LOC101476695,LOC102196708,LOC102308715,LOC103385400,LOC101173865 coding downstream 129146 12306258 ~ 12323341 (-)
LOC120559913 cacna1f coding upstream 697 12468700 ~ 12493767 (-)
timm17b timm17b,LOC102791711 coding upstream 26002 12494005 ~ 12499465 (-)
gpkow gpkow,LOC103467951 coding upstream 36398 12504401 ~ 12511572 (-)
LOC120558830 LOC103354715,LOC100701974,LOC102202290,LOC102794242 coding upstream 146938 12614941 ~ 12635550 (-)
LOC120558433 gpr173,LOC107086794,LOC102204197,LOC101466594,LOC108231911 coding upstream 206384 12674387 ~ 12679665 (-)
G49183 snph non-coding downstream 65263 12383502 ~ 12387224 (-)
G49180 NA non-coding downstream 71702 12376979 ~ 12380785 (-)
G49179 NA non-coding downstream 75511 12376288 ~ 12376976 (-)
G49177 LOC108232018 non-coding downstream 76925 12375337 ~ 12375562 (-)
G49178 NA non-coding downstream 79179 12371821 ~ 12373308 (-)
LOC120558434 kdm5c,LOC101072313 non-coding upstream 136877 12604880 ~ 12661242 (-)
G49307 NA non-coding upstream 232426 12700429 ~ 12704105 (-)
G49372 NA non-coding upstream 300817 12768820 ~ 12771419 (-)
G49374 nt5dc2,LOC102799881 non-coding upstream 307914 12775917 ~ 12779320 (-)
G49384 NA non-coding upstream 369517 12837520 ~ 12839132 (-)
prickle3 prickle3,LOC102790576 other downstream 12578 12415603 ~ 12439909 (-)
fkbp1aa LOC100692950,LOC107391264,LOC103354614,LOC101168621 other downstream 60810 12388981 ~ 12391677 (-)
ppdpfa LOC104933328,LOC101073585 other downstream 229459 12220734 ~ 12223028 (-)
dnmt3ba NA other downstream 283278 12147414 ~ 12169209 (-)
G49083 LOC103354491,LOC102226477,LOC108232148 other downstream 324062 12126886 ~ 12128425 (-)
camta1a LOC103354943,LOC102299287,LOC102779653,LOC102211199,LOC106922242,LOC104961361,LOC107390471,LOC108232047,LOC103144055 other upstream 456455 12924458 ~ 13221338 (-)
LOC120558587 NA other upstream 782983 13250986 ~ 13253608 (-)
LOC120558437 NA other upstream 840357 13308360 ~ 13312729 (-)
LOC120558461 NA other upstream 938782 13406785 ~ 13413178 (-)
zgc:66479 NA other upstream 1279400 13747403 ~ 13753866 (-)

Expression


Co-expression Network