bhlhe23 (bhlhe23,LOC102799046)


Basic Information

Item Value
gene id bhlhe23
gene name bhlhe23,LOC102799046
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 17614435 ~ 17616207 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039802019.1
ACTAACTTGCGAGCAGGGCAGAGCACGAGTCACAATCTGCCCAAGGCGAGGGAGGGCACGAAAGACGCGCGAGAGAGGAAGCCGACCGTACGAGGGGACCGAGCACAATTAGAGAAGTGTTGTTGAACGTGGGCTATGCGCGCAACAAGGGGGGAGCGCGGTGTACAGAGGAGTGAATGCTCGTAGAGGCTCAGCTTCAGATTCACAGCCTCCTTCTTGAAGAGTCACTGCACTGACAGAGGAAAGGagcgagaggaagagaggaactCCTAGAAAACTGCAACTCTTGGAGAGAACTACGTGAGTACAGCATACAGTTTTCCAAAACAACAAATAGGATAGAGAAACAAGCGGAAGAGTAGACTTTTCCTGGTCAGAATCTGTTCTGGAAGAGAAAATGAATGTGAGCGAAGAGAACCTGCTTAAGTCCATCAGCAACGACGCGCTCCTCGACCTGACGCAGCGCTACGGCCAATCAGCCTTTGGGTTCGGTCCCGGCCACGGTGCTGGAAGTCCCGGCCGGTTCCCACTCACACCGGCCAACGACTTCCTCTCCGGGCAGACTGCGAAGTCCAACGAGAGCGGCGGGGAGCACACGAGCGACGACGAGGACGGCTTTGACTCGCTGGAGTCGCGGAAGAGAGGCTCGTCATTTGGGGACGACAAGCCCGGGGGCCCCCTCACTAAAAAGTCCAAGGAGCAGCGGTCCCTGCGGCTCAGCATCAACGCccgggagaggaggaggatgcatGATCTGAACGACGCACTGGACGGCCTGCGCGCTGTTATCCCCTACGCCCACAGCCCCTCGGTGAGAAAACTCTCCAAAATAGCCACTCTCCTCTTGGCCAAGAACTATATCCTCATGCAGGCTCAGGCTCTGGAGGAGATGAGGCGGCTGGTGGCGTATCTGAACCAGGGACAGACCATAAATTCACCAATCCCCACCGCCCTGGCGCCCTTTGGACAGGCCGCCGTCTACCCATTCTCGGGCTCTGCACTCGCCACCTGTGCCGAAAAGTGCACTACTTATTCCGGGACACCGTCGAGTCTCTTCAAACACTGTAACGACAAGCCTTGATTTGGTTTAATTCTCTTTCCTGAACTTTTACCTATTAGGCTACTGCACCCATGCCGGTCTCTCTCCCActctagttattttttttttaatcatcattcattctgtaaaaaatacaacaaGTTTAGTATAATGCATAATCTTAAAATATTGTTAAGTAATTATACTGCAATGTTTTATCCATATTTAACAAACGCTACATATAAAACAAACAGCATTGGGCCTTCCTGTATGATTAAGTTTGTCGCTCGTACTTTACAGACAGGTCCATATTATGAGTTTTGGTAAATTTTAGGAGGATTAAGTTATCAGTTCTTATTTGATCTATGCAACATTCAGCAACTTACAACATGAAAAGTAGAAATGCCAAGACATGCGACCTAATCTCGACCTTTAGATTTAGCAAATATGAAAGGACTTCCCTCGACTGACTGTACTGATGCTATGTGGAGGAACAAATGTGATGTTGGCTGACACTATTTTCTGGAACGATGTGTtgacaagtttgttttttatttattttaagtcatTGCACATCTCACATGATTGTATTGTAACTGTGGAAAACCATTTGCTCCAAGCCCGGCTATACTATTATATTACTACATTGAAGAAGCGTTTTTGGTTGTGTTGCAACATGGATTTCATATATTGTTTACATGTCTTTATAATTAAAACACATATCTTTGCTTGGA

Function

symbol description
bhlhe23 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in neuron differentiation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within cell development and regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in basal plate midbrain region; brain; neurons; and retinal inner nuclear layer. Orthologous to human BHLHE23 (basic helix-loop-helix family member e23).

NR:

description
PREDICTED: class E basic helix-loop-helix protein 23

GO:

id name namespace
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K09086 BHLHB4_5, BETA; class B basic helix-loop-helix protein 4/5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039802019.1 True 1773 mRNA 0.48 1 17614435 17616207

Neighbor

gene id symbol gene type direction distance location
dnah12 dnah12 coding downstream 42234 17547203 ~ 17572201 (-)
asb14b LOC100700796,LOC102307994,LOC103354452,LOC102775635,LOC102205832,LOC101483549 coding downstream 68129 17542599 ~ 17546306 (-)
tasorb LOC103354451 coding downstream 72313 17521928 ~ 17542122 (-)
LOC120559199 grm7,LOC104935569,LOC103354449,LOC101484945 coding downstream 93865 17405102 ~ 17520570 (-)
LOC120559574 LOC104961988,LOC104935553,LOC102207720,LOC101165305 coding downstream 255737 17325207 ~ 17358698 (-)
LOC120558364 ythdf1,LOC107096006,LOC105906423 coding upstream 55454 17671661 ~ 17682357 (-)
nkain4 nkain4,LOC106924573 coding upstream 73748 17689955 ~ 17736828 (-)
uckl1b uckl1,LOC102795005,LOC103372048 coding upstream 299049 17915256 ~ 17935671 (-)
znf512b znf512b coding upstream 320287 17936494 ~ 17970913 (-)
b4galt5 b4galt5,LOC104935810,LOC102792691,LOC100696774 coding upstream 543967 18160174 ~ 18190215 (-)
G50647 NA non-coding downstream 143760 17470207 ~ 17470675 (-)
G50574 NA non-coding downstream 363161 17250650 ~ 17251274 (-)
G50561 NA non-coding downstream 408806 17203747 ~ 17205629 (-)
G50567 slc6a6,LOC106905582,LOC103145023,LOC101165803 non-coding downstream 420800 17190077 ~ 17193635 (-)
G50553 NA non-coding downstream 461008 17152200 ~ 17153427 (-)
G50709 NA non-coding upstream 66841 17683048 ~ 17683519 (-)
G50779 LOC102310871,LOC107096010,LOC102797073 non-coding upstream 166481 17782688 ~ 17786360 (-)
G50803 prpf6,LOC107673318,LOC102793577 non-coding upstream 424202 18040409 ~ 18041404 (-)
G50808 NA non-coding upstream 437812 18054019 ~ 18057349 (-)
G50848 NA non-coding upstream 623652 18239859 ~ 18240070 (-)
LOC120559328 smim4 other downstream 499388 17106834 ~ 17115047 (-)
G50217 fgd3,LOC104966710 other downstream 1330579 16281044 ~ 16283856 (-)
G49845 naca,LOC107737655,LOC106571941 other downstream 2760618 14845338 ~ 14853817 (-)
map3k12 LOC104930685,LOC103358642 other downstream 3062877 14539788 ~ 14551558 (-)
G49766 LOC103358643,LOC101487433,LOC103144045,LOC101072611,LOC101159823,LOC107094832 other downstream 3079830 14532124 ~ 14534605 (-)
G50712 birc7 other upstream 71908 17688115 ~ 17689760 (-)
zbtb46 zbtb46,LOC102795869 other upstream 218873 17835080 ~ 17895082 (-)
samd10b samd10,LOC107570869 other upstream 358086 17974293 ~ 18101572 (-)
LOC120558627 LOC103370864,LOC104963599,LOC101472162 other upstream 1258548 18874755 ~ 18886895 (-)
kcnd3 kcnd3,LOC102776651,LOC102303593,LOC100697611,LOC101470631 other upstream 1329761 18945968 ~ 19077781 (-)

Expression


Co-expression Network