LOC120558310


Basic Information

Item Value
gene id LOC120558310
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 9764068 ~ 9766189 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005639087.1
aagagtttacctGCAAAACGTcatgtgcaaaataataatttttctcgcttctgtttttgtgatcattagctCAAATcgtaatcgcgattaaaaaaaatttattaattgCACAGTCCTAAAATCTTTTGAATAGGCAAGTCCAGCGTCGCCGTGTAAACTAGCAAAGCTGCTTTCTCTGTGGAGCGGCGCAGTCTTTCCCccgctagtctcgctttgccagaccctcctccaaagtgcgttggaggagggtctggtctactccacacagcattccgggacgGGAGGAAAACcgggctctggtttattggcatttctttaaaccaatcacaatcgtcttgggcggcgctaagcaccagaGAAAAGCCGCGGCGCCGCTGCTAAATAGgttcggaaggaacttgttttggtggaacgtgttcgttcaaaagttgtcttagtcgtgcaacagaaaactcagattggacagatagtctagctagctgtctggatttaccctgcagagatctgaggagcggtTAACCATAGtgctcagaaatccaccggagtttagaatgccgacacaaaggaagcccaaggcaacggatatccggcctaaatgagtgaaattcTGCGGATTTTCCGGCGGAAACGGAGCAGTCCCGGAAATGGAACATCAAGGACATGGACTACAATGCAGTCCATTCAAAACAATGCCGTCTATACGctgaacgtttttttttttttaaacgtaaaaGGAAGAAGTTTTCCGTGTTCAGCGTGAGCATTGTCGTGTAAACGTAGCCTGAAGCGCTGCACGCAGACCAAATGGAGACCGAGACCAGAGACGAGCACAAGCTCATCACGGGTGGCTGTGATTAGACTTTTAACTTTCCTTTACCATCCagtccttatttattttttacaactttCTCTGATTTATTTCAGATCAAATCATCATGGAaggtatttatattttaatcatGGTGAGTTTCCTTAAAAATCTATTTCAACTTTTCAAGTTTCTTTTTGTTGCATACAGCAGGTATATAAACGGCGATAAACGGCACAGCCTGCGAATATCTGAACAGTGACACATTCATCATCGTGTTGGCTCTGCACTCCAGTACGGTAGATATCGAAATGACACAATAAttttggaACTATTCTTAAGGTGGCATGTGTGTGACACGGAGTAGCATTCAGGAGAGGTTCGTAAAATACTGCAGCTGCGCTGATTCTCCGTGTCGGCGCATTATTTATATTGTGTTTAATTTGTACGACAACATGTTAATGATTTTGGGAAAATGTAAAAGCTCTTGTCTTGTGAAGTGGTGTCTGTGAAGTAAAAGCGTGCACATACaaatctgattggctatcaCACTATCCTGTCAAAGCCTTTTAGATTACAATTGTAATATTCACAGCAATGCGTTTTGAATTGTGAATAATCCAATCTGACAAAGATCATTTATAAAGATTGATGTTCAGTATGTAACCGCTTCTAAACAAATCTTTGGTTTGGTGAAATGATGGTTGTTCTTACAATCCTGCTGTGTTGTCAAGTGCTACATTACATAGAACACACAGTGAACCTTAACCCGTATATACGCAATAAAATCTTCTCAAAACAGAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005639087.1 True 1614 lncRNA 0.42 2 9764068 9766189

Neighbor

gene id symbol gene type direction distance location
klhl21 klhl21 coding downstream 78434 9548670 ~ 9685634 (-)
nol9 nol9 coding downstream 228385 9522095 ~ 9535683 (-)
irx7 LOC103370648 coding downstream 392438 9369961 ~ 9371630 (-)
LOC120559472 LOC104950550,LOC105926880,LOC102779557,LOC106567326,LOC106567306 coding downstream 409438 9312886 ~ 9354630 (-)
cbln4 cbln4,LOC102783801 coding downstream 471930 9287548 ~ 9292138 (-)
LOC120558654 LOC103359731 coding upstream 21176 9787365 ~ 9881696 (-)
LOC120558325 NA coding upstream 124366 9890555 ~ 9901658 (-)
ints11 cpsf3l coding upstream 138119 9904308 ~ 9916135 (-)
zgc:193690 LOC104936306,LOC102788238,LOC100707688,LOC102213016,LOC101470444,LOC102313919 coding upstream 158988 9925177 ~ 9933192 (-)
mul1b mul1 coding upstream 212064 9978253 ~ 9985133 (-)
G48436 NA non-coding downstream 1619 9760890 ~ 9762449 (-)
G48430 NA non-coding downstream 198854 9564964 ~ 9565214 (-)
G48311 NA non-coding downstream 478816 9284917 ~ 9285252 (-)
G48306 NA non-coding downstream 481546 9282296 ~ 9282522 (-)
G48285 NA non-coding downstream 551243 9210924 ~ 9212825 (-)
G48479 NA non-coding upstream 126779 9892968 ~ 9893826 (-)
G48477 cptp non-coding upstream 150389 9916578 ~ 9918879 (-)
LOC120558372 NA non-coding upstream 248214 10014403 ~ 10018354 (-)
G48522 NA non-coding upstream 256939 10023128 ~ 10023993 (-)
G48569 NA non-coding upstream 533355 10299544 ~ 10299879 (-)
c1qtnf12 fam132a other downstream 10382 9727874 ~ 9753686 (-)
olfml3a LOC103359736,LOC104967461,LOC102308353,LOC101465779,LOC102785892 other downstream 39934 9689729 ~ 9724134 (-)
plekhg5b plekhg5 other downstream 244613 9427206 ~ 9519455 (-)
LOC120558858 LOC103370645,LOC100704217,LOC102196282,LOC102305949,LOC101463755,LOC102780123 other downstream 355665 9379000 ~ 9408403 (-)
LOC120559289 LOC106911506,LOC106515592 other downstream 1058585 8702965 ~ 8705483 (-)
hipk1a LOC103359735 other upstream 122 9766311 ~ 9785241 (-)
G48523 NA other upstream 258805 10024994 ~ 10025825 (-)
G48697 NA other upstream 875216 10641405 ~ 10733887 (-)
LOC120558961 NA other upstream 1737638 11503827 ~ 11508337 (-)
srxn1 srxn1 other upstream 2119776 11885965 ~ 11891139 (-)

Expression


Co-expression Network