LOC120558463


Basic Information

Item Value
gene id LOC120558463
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 13355117 ~ 13357805 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005639127.1
TTAACAACTACCTCAGCTGTCTACCCAATATAAACTGCTCAGCCACACATCCATCAGACATCCAACAGACATCCATCAGACACTATACGCTTCTTTCACCACTATATTTGTGCTGTTTAATCACTGATTGAATCTTTACCCACCATCCTGATAAAGTGGCAACATGTGCAAACTCACTCTAACTGCAGGTCTCTGTTTGATCATCGCCAGCTTGGGTTATCCTGGCCTCACGGATACAGCTGCAGTGCCGCCAAACACCTGTAATGGAAGGATCAGTGGGCTATACCCCAACCCTGCTGACCCACATTCTTTTTACAATTGTGGTAATGGAATAGCCTACCTCCAAAACTGCCCATCAAATCTGGTCTTTGACCCAACATGCAGCTGCTGTAACTATCCCACAACCAAGCCACCACCAATCAATAAGTTCTGTAATCGAAAGAGCAATGGCCAATACACTAACCCTGCTGACCCATCTTCTTTTTACAATTGTTGGGATGGAAGAACCTACCTCCAAACCTGCCCATCAAATCTGGTCTTTAACCAAAAATGCAGCTGCTGTAGCTATCCCCAAAAAAGCAATGTGCTACCCTAGCATGAGTAACTTCTGtgatggaaagaaagagaacTTATGCAGCTAAAACTTGTGGACAGGAATAGTTTCTCAGTCTATAAAATGGCaatacatattcatattaaCACAAAGGAGACATTGTCAAAGCTGTTATATATTTTCTTCGGATTTTTCACTTTTGAGTTATATGTTGAAAATAGGGGTGTAACGCTATACACAATTCACGGTATCTCACTATATTGTATGGGTGTGTtcttatttgtttatatttaaccACTGCATGACTGGATTTGTCTTACATTATGACACAGATGTTGCATATTTCATACATGTATATGCTGTGTGTCTAAATGTAAATACATACTACAAAGCATtttgataaaaatgaaatgatcaaTCAATAAAATACTATAAGTTT

Function

GO:

id name namespace
GO:0005922 connexin complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005639127.1 True 992 lncRNA 0.39 5 13355117 13357805

Neighbor

gene id symbol gene type direction distance location
LOC120559526 NA coding downstream 11164 13339493 ~ 13343953 (-)
LOC120559881 NA coding downstream 26867 13307588 ~ 13328250 (-)
LOC120559884 NA coding downstream 55125 13292514 ~ 13299992 (-)
mfsd4ab mfsd4a,LOC105928558 coding downstream 92319 13259325 ~ 13262798 (-)
LOC120558584 cdc42,LOC100697482,LOC101164400,LOC101073733,LOC107083933,LOC103465423,LOC100691174 coding downstream 105555 13243174 ~ 13249562 (-)
LOC120558460 NA coding upstream 38211 13396016 ~ 13406184 (-)
nfascb NA coding upstream 57136 13414941 ~ 13435506 (-)
LOC120559331 LOC104955230,LOC106567269,LOC101065054 coding upstream 79784 13437589 ~ 13443946 (-)
LOC120559332 NA coding upstream 87438 13445243 ~ 13447764 (-)
LOC120559852 LOC104955226,LOC102789706,LOC101477062 coding upstream 152846 13510651 ~ 13519559 (-)
G49447 LOC104955234 non-coding downstream 70867 13281987 ~ 13284250 (-)
G49407 NA non-coding downstream 430789 12921001 ~ 12924328 (-)
G49384 NA non-coding downstream 515985 12837520 ~ 12839132 (-)
G49374 nt5dc2,LOC102799881 non-coding downstream 575797 12775917 ~ 12779320 (-)
G49372 NA non-coding downstream 583698 12768820 ~ 12771419 (-)
LOC120558462 NA non-coding upstream 8458 13366263 ~ 13368373 (-)
LOC120558464 NA non-coding upstream 18822 13376627 ~ 13378863 (-)
G49514 NA non-coding upstream 74714 13432519 ~ 13433095 (-)
G49624 oard1,LOC106909399 non-coding upstream 297726 13655531 ~ 13657376 (-)
G49673 NA non-coding upstream 822535 14180340 ~ 14184391 (-)
LOC120558437 NA other downstream 42388 13308360 ~ 13312729 (-)
LOC120558587 NA other downstream 101509 13250986 ~ 13253608 (-)
camta1a LOC103354943,LOC102299287,LOC102779653,LOC102211199,LOC106922242,LOC104961361,LOC107390471,LOC108232047,LOC103144055 other downstream 133779 12924458 ~ 13221338 (-)
prickle3 prickle3,LOC102790576 other downstream 915208 12415603 ~ 12439909 (-)
fkbp1aa LOC100692950,LOC107391264,LOC103354614,LOC101168621 other downstream 963440 12388981 ~ 12391677 (-)
LOC120558461 NA other upstream 48980 13406785 ~ 13413178 (-)
zgc:66479 NA other upstream 389598 13747403 ~ 13753866 (-)
smim29 LOC104942556,LOC104932788,LOC105416285,LOC106572343,LOC105022745 other upstream 681930 14039735 ~ 14125823 (-)
LOC120558710 NA other upstream 782575 14140380 ~ 14145222 (-)
LOC120558545 LOC104942567,LOC103358644 other upstream 1058531 14416336 ~ 14432994 (-)

Expression


Co-expression Network