LOC120558566


Basic Information

Item Value
gene id LOC120558566
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 42005511 ~ 42008260 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005639144.1
ggagaaaaacgaGCGCACCTCTTCAACAGGCGTACCCCAGTCACCCCACATAGTCTCTCGGGGACTTGGCTTCGGACCAGCGGCTAGTTTTGTCCTAAACTACACTCTGGCTCCTGGGGCAGGCAGGCGAGAAAACTACTTCCGAGGCTACCAGCTGTTCCACAAGGgcagctggaaaatgcacagTCCTAAGGTGTTGAGAGTCTTTAATATTTTACCTGGCAGGTAAAACCAAGGGTCAGACTGAATTGTTCAGTTGGCTGTTTTAAGGAATATTGATGGCATCGAAAAatacacagcccacctccagtcCGTAGGCTAGACCATCACATACATGAGTTCCTCGAATACTTTTGGGAAACCCTACTTGCCCAGTCTCTGAATGCGATGGATGTGGTGAGCGTGCTGCACAGGGGATTTTGTGATCTCTGGAATACAAGACTCTTGGAGACTGACGATTTTCGCTGGCTGGAGAGGTGTCTGGAGCTGCAGGCGGCCAGCAAGCCACCAAACCAGCTGGTTTTTTTCACGGCTGGGAAGGGCCCATGCTAAAACTTATTGCACCACCTGCAGGTAGCGTGGGCGGACATGGGCCTTAAAGGGTCCCTCAACTTCACCGACCTGAGGACGGCTGTGTTTGCGCATTAGCAatataacaacaataacaacctGCCTGCCGAGCAGCGGACGATGGTGGCCACCTTGATGTGCAACAACACGGCCACAGCTGACTGCTTCTAAGCCCTCAGCCTGAACGTGGCCCAGTCAAAGAGGATGAGGGAGCATTTCCGCCAGGCCCTCACCCACACCGTGCCATCACCAGAGTCACCagaagcctcctcctcctccaccaccaggAAGAGGTCCTGCAAGCCTGAGTACTCCTCCAGTTCTGAGGACGAAACCCCTGTCCCCTACCAGGAGTCAGGGACCTCGGGActggaggagcagagggagTTCATGCAAGGCTGCAAAATACACCAGAGAAGGCCCTCAGGACGAGCCAGTACGGCAGGCTGATGTTGGCGCTGGCTCAACCCCAAGGGCAGCGTATCGCGTGGCACAACAGACttgcagccccccccccacccacacacacacacacgcacgtaaatagttgttttattgtgtttttatagaTTGGTTAAGattcattttgtattattagATGTTCTATTTTAGTAAATGTTAAGATTAATTTtcttttagtgtgttttcaaatgttgttCAATATTGGTATGTGTTTAATACAAGTTccttttttacttaaaatgacACAACTATAATACTGAGCACGCTTAGCCTAAACATGAAGCTATGAACACCAAATTGGTCAGGTATTCTTAACACAGGCTCACCTTTGACTTTGAAAAGGTTCAAAGTATCTCGCTTTATTAAATTACATAGATATCCAGTGCaatacttaacccttgtgtggtccttcgggtcccagtgacccgaaggaccacacaagga
>XR_005639145.1
ggagaaaaacgaGCGCACCTCTTCAACAGGCGTACCCCAGTCACCCCACATAGTCTCTCGGGGACTTGGCTTCGGACCAGCGGCTAGTTTTGTCCTAAACTACACTCTGGCTCCTGGGGCAGGCAGGCGAGAAAACTACTTCCGAGGCTACCAGCTGTTCCACAAGGgcagctggaaaatgcacagTCCTAAGGTGTTGAGAGTCTTTAATATTTTACCTGGCAGGTAAAACCAAGGGTCAGACTGAATTGTTCAGTTGGCTGTTTTAAGGAATATTGATGGCATCGAAAAatacacagcccacctccagtcCGTAGGCTAGACCATCACATACATGAGTTCCTCGAATACTTTTGGGAAACCCTACTTGCCCAGTCTCTGAATGCGATGGATGTGGTGAGCGTGCTGCACAGGGGATTTTGTGATCTCTGGAATACAAGACTCTTGGAGACTGACGATTTTCGCTGGCTGGAGAGGTGTCTGGAGCTGCAGGCGGCCAGCAAGCCACCAAACCAGCTGGTTTTTTTCACGGCTGGGAAGGGCCCATGCTAAAACTTATTGCACCACCTGCAGGTAGCGTGGGCGGACATGGGCCTTAAAGGGTCCCTCAACTTCACCGACCTGAGGACGGCTGTGTTTGCGCATCAatataacaacaataacaacctGCCTGCCGAGCAGCGGACGATGGTGGCCACCTTGATGTGCAACAACACGGCCACAGCTGACTGCTTCTAAGCCCTCAGCCTGAACGTGGCCCAGTCAAAGAGGATGAGGGAGCATTTCCGCCAGGCCCTCACCCACACCGTGCCATCACCAGAGTCACCagaagcctcctcctcctccaccaccaggAAGAGGTCCTGCAAGCCTGAGTACTCCTCCAGTTCTGAGGACGAAACCCCTGTCCCCTACCAGGAGTCAGGGACCTCGGGActggaggagcagagggagTTCATGCAAGGCTGCAAAATACACCAGAGAAGGCCCTCAGGACGAGCCAGTACGGCAGGCTGATGTTGGCGCTGGCTCAACCCCAAGGGCAGCGTATCGCGTGGCACAACAGACttgcagccccccccccacccacacacacacacacgcacgtaaatagttgttttattgtgtttttatagaTTGGTTAAGattcattttgtattattagATGTTCTATTTTAGTAAATGTTAAGATTAATTTtcttttagtgtgttttcaaatgttgttCAATATTGGTATGTGTTTAATACAAGTTccttttttacttaaaatgacACAACTATAATACTGAGCACGCTTAGCCTAAACATGAAGCTATGAACACCAAATTGGTCAGGTATTCTTAACACAGGCTCACCTTTGACTTTGAAAAGGTTCAAAGTATCTCGCTTTATTAAATTACATAGATATCCAGTGCaatacttaacccttgtgtggtccttcgggtcccagtgacccgaaggaccacacaagga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005639144.1 True 1476 lncRNA 0.50 6 42005511 42008260
XR_005639145.1 False 1473 lncRNA 0.50 6 42005511 42008260

Neighbor

gene id symbol gene type direction distance location
LOC120558558 NA coding upstream 56984 41945023 ~ 41948527 (+)
LOC120558614 NA coding upstream 335041 41654765 ~ 41670470 (+)
LOC120558613 NA coding upstream 399290 41600488 ~ 41606221 (+)
LOC120558621 NA coding upstream 426446 41571688 ~ 41579065 (+)
LOC120559077 NA coding upstream 581590 41402079 ~ 41423921 (+)
LOC120558560 NA coding downstream 19512 42027772 ~ 42034763 (+)
LOC120559084 NA coding downstream 396562 42404822 ~ 42411394 (+)
LOC120558561 NA coding downstream 403859 42412119 ~ 42413646 (+)
LOC120558555 NA coding downstream 554386 42562646 ~ 42575410 (+)
snx21 NA coding downstream 597780 42606040 ~ 42613341 (+)
G57327 NA non-coding upstream 86395 41918897 ~ 41919116 (+)
LOC120558547 NA non-coding upstream 93640 41906498 ~ 41911871 (+)
G57301 NA non-coding upstream 125137 41880086 ~ 41880374 (+)
G57241 NA non-coding upstream 241229 41760876 ~ 41764282 (+)
G57223 NA non-coding upstream 302668 41684815 ~ 41702843 (+)
G57378 NA non-coding downstream 162405 42170665 ~ 42175396 (+)
G57385 NA non-coding downstream 217087 42225347 ~ 42285955 (+)
G57419 NA non-coding downstream 397701 42405961 ~ 42935583 (+)
LOC120558565 samd3,LOC101476819 non-coding downstream 421829 42430089 ~ 42432145 (+)
G57433 NA non-coding downstream 478486 42486746 ~ 42546095 (+)
G56947 NA other upstream 868948 41119548 ~ 41136563 (+)
LOC120559073 NA other upstream 901797 41099907 ~ 41103714 (+)
G56847 NA other upstream 1517391 40386328 ~ 40488120 (+)
G56818 NA other upstream 1856891 40102385 ~ 40148620 (+)
LOC120558563 NA other downstream 431742 42440002 ~ 42440899 (+)
LOC120558567 NA other downstream 463636 42471896 ~ 42473941 (+)
zgc:113363 LOC103367255 other downstream 1370086 43378346 ~ 43385991 (+)
LOC120559089 LOC102209886,LOC102308207,LOC103153489 other downstream 1832587 43840847 ~ 43953510 (+)
LOC120559493 NA other downstream 1973742 43982002 ~ 43984512 (+)

Expression


Co-expression Network