LOC120559427


Basic Information

Item Value
gene id LOC120559427
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 3447209 ~ 3450188 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XR_005639268.1
GAAGCAATAACAAATAATAACCAGAGTTCTGGTGTTTGATCTGCACCCGAGTTCAGGTGACCTTCCACACCGTCCCAAACCAACCGGACTATTCATAGTGGAGGTATGTTGACGACAGTAAAGTTATTAGTGTAAGTTAGCTCACCTAAACAACCGCGtctgagtgagacaggaagacagCCGTTCCCGAGATGACGTTATCTTTTGCCTTCTGTAGAAGTGGTGAACTTACAGCTTGCAGCAGTTTGACAAGATATAGTGTGTAGCTTTGGTTTGATATCTAGTGTTGGCCAAAtcactttttattgagtttcctgttagtgaaatgctctgagtgaatttaagctgggcttttattctgaagggtAGACACTGAAAAGCCAGCGTTATGGTAgtgtttgtttttacctttaTATGTATTCACAGTTTAATATAATGCTGTTTTCTCCAAACTACTCCAAGGTCATTTTTTAGCTAGGAAGGAAATGGAACAGTTTTACAGCCACTGCTTTGAGTTTGCAGACTGTTCTTTtaggtgtgtgtggatgtgaggaGACAGCAGCTTCTGAATATCTCTGCATGCTTTGATTTGTACTGAACAGAATCCAGAGTGAGTCCAGCAGCCACATTGGAGATATGCTCGATTTAAGGGCCAGAGTGGAATGGAGggaatggaggaggacaacCAGAACCCGGAGCAGCAGAGCAACAAGGTCCCCAGAAGACAAGCAGCGGACTCGGACTCTGATAGCAGccatgttcagACATGTATTCTGTGGACAAAGAGGATCCCTCTtctggggaggaagaggaggaatgtGAGGAGAGCCAACAGATAGCCTAAGCTACAGATCTAAGGGAAGAAAGCAAATCTCTCAGGGATCTGTGTGCTCCACCGGACAGTTTGACAGGAAGCGCTCATCTCAGCCGTCACCACGGAGACAAAGAGGAGGCCAAAGAAAGAGAGGATGTAAAAGGAGGATGACAAAAGAACAGGGCTCCAATGGAGACAGTGTATAAGTGTGGAACAGTGTTGCATTGCACACATATGggccatgtgtgtgtgcctgcatggGTGTGTGTTATTTGGGTCtttgagtgtgtgcatgcatgcgacAAAAGAGTtgaatgtgagagagagagagagagaggaaaacagATAGACATTGAAGAAGGTTAgaatattaatgagcaggtATATGGAAAAGTTTAACCTGAAATCATGTCTGGCCAGGGCTGAAATTCCAGTCAGCCAAGGATAATGCACAAGAAATATGAGAACTGCATTTTCTCAAGCAAATACAtgggttattttatttatttcaggattCAACAGCATTCTGGGACTTTAGGTCATTTTTCCATAAAACTATATCCATGTgtgaaaaatgtgattttgaatCCCTTTCATTCACATCATGTACAGGGCATGCCACATAATGATACTGGTCCTAAAACACACATGTCAAGAACAATTGGAAAGAGCGGATGATGCACACAGCTGAAGATGagataaaataacattaaaccATCTTACGCATACTTTACAAACATGTAAGATTCTATTTTATCTGTAGTGTGATGGTCAAAGAGCCAAAAAGTTGTAGGGCCGTTATGAGGTTATTTTATATTATGTCTCACACAGTTTGACCAGACATTGTGAATAAAGTCCAGAGGCTATTGTATATGATACACAGATATGCTGCACTATATTACATGATATACTACAGTGTGATAAGTATACAGTAAACAGTTATATTGCAGAGCCAATCCCTATTGGAATTTTAACCAAGGAACTGTAGGGCTGCTTCCAAAGTTAGTACACAACAGtgtatatgacacatgcctgtggtgtgggagacctgggttcgattcccactgcgatacatcaaccaatgtgtccctgagcaaggcacttaacccctagttgctccagaggcgtgcgacctctgacacacacatatagcaattgtaagtcactttggatgaAATCGTCAGCTaagtgacatgtaatgtaagATAACATACGATAAAATAGACTTtgttaatcccacactgggggaAATTCCTGttctacagcagctcaaaagaaaaatgtacacacatcagaacAACACAAATTCACATTAAttagacataggagaaaaaatatacataaactataggaa

Function

GO: NA

KEGG:

id description
ko00310 Lysine degradation

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005639268.1 True 2168 lncRNA 0.42 3 3447209 3450188

Neighbor

gene id symbol gene type direction distance location
LOC120559390 NA coding downstream 20888 3383690 ~ 3426321 (-)
LOC120559411 NA coding downstream 107489 3331769 ~ 3339720 (-)
LOC120559400 NA coding downstream 194158 3251882 ~ 3253051 (-)
LOC120558537 NA coding downstream 227426 2859280 ~ 3219783 (-)
LOC120559395 NA coding downstream 255039 3185278 ~ 3192170 (-)
LOC120559410 NA coding upstream 8239 3458427 ~ 3459070 (-)
lrrc38a LOC103362254,LOC104932799,LOC101069713,LOC101473207 coding upstream 83891 3534079 ~ 3553937 (-)
LOC120559443 LOC103362253,LOC101473498 coding upstream 114321 3564509 ~ 3628773 (-)
trappc6b trappc6b coding upstream 285311 3735499 ~ 3745613 (-)
foxp3b NA coding upstream 320865 3771053 ~ 3809905 (-)
G46856 NA non-coding downstream 288637 3157691 ~ 3158572 (-)
LOC120559426 NA non-coding downstream 317356 3121212 ~ 3129853 (-)
G46803 NA non-coding downstream 375809 3070176 ~ 3071400 (-)
LOC120559428 NA non-coding downstream 387755 3056573 ~ 3059454 (-)
trnaq-cug_3 NA non-coding downstream 502285 2944853 ~ 2944924 (-)
G46816 NA non-coding upstream 66515 3516703 ~ 3517741 (-)
G46920 NA non-coding upstream 68249 3518437 ~ 3518669 (-)
G46979 NA non-coding upstream 253833 3704021 ~ 3704389 (-)
G46995 NA non-coding upstream 380571 3830759 ~ 3831182 (-)
G46999 NA non-coding upstream 392960 3843148 ~ 3843663 (-)
G46817 NA other downstream 161286 3283041 ~ 3285923 (-)
G46698 NA other downstream 1099705 2346505 ~ 2347504 (-)
LOC120559407 NA other downstream 1111508 2329654 ~ 2335701 (-)
rps21 rps21 other downstream 2201981 1236385 ~ 1245228 (-)
G46199 NA other downstream 2465098 976808 ~ 982111 (-)
LOC120559401 NA other upstream 40816 3491004 ~ 3493963 (-)
LOC120559679 LOC103384848,LOC102790723,LOC100693496 other upstream 484323 3934511 ~ 3950171 (-)
G47058 NA other upstream 504838 3955026 ~ 3955529 (-)
G47059 LOC102202574 other upstream 505416 3955604 ~ 3956382 (-)
dedd dedd,LOC103374682 other upstream 1141259 4591447 ~ 4621836 (-)

Expression


Co-expression Network