G59172 (sub1)


Basic Information

Item Value
gene id G59172
gene name sub1
gene type unknown
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 4424141 ~ 4429981 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU79482
ataaatacttcaGACTTATGCATAGGCCTGGCCTATGAGTGTTTATTATGGTGAGTATTAAGTGAGTGACCCCTGGTGGTCCATGAGTAGATTtggtaaaataatgtttttatttaaaattctgTTTCTCAAACTGTCTGCCAGCAACTCCAAAGCCTAGTGAGGTGCATAGATGTGCTGTTTTCAATATTGTGTGAATGCAAACGAATTATTTAAATTGGCTGTTCTGCTGTGTCGTTTAACTTCAACAATAATGCCGTCCGTTTTGCAACAACTCCTCCAATTTATGTCACAAATGATCCTCAGCGTGACATTCAAAGgatatatatatggatatatgAAGTTTACTGTTATTGTCAACTGACAAGATGGATCAATGGCTTCTGACAGACATTGCTTGCCTGATGCCTCAGCAGCACCATTCTTGGCAACAGAGACAATAAGTGAGTAAGCTATTTGTAGAAGTGTCATTTTATTTGGCTGGTCTATTGTTTTGGGGGATAATTTGGCAGTTCTGTGGTCCGTGAGTTGGTTTTTTTATCGGGTAAGTGGTCCTTGGTCTGataaagtttgagaaacaccatactgtatataggcctaGAACTTTTGGCCTTACACACCAAGGACACACAAGCCTCCTGTTCTTTATGACAAGtgtggtagggctgggcgatatggagaaaatcagatgatatgatatttttgaccaaatacatcgatgatattatagggttgacaattggtgctttcacaaaatattttttacaatgagattttagacaaataatcatcaatatGGTAAACAGTTTCAAGTGAAATTATagagaaaacttttttttccagctaTATACTGACtgtttacatgcatgcacaacaATAATGCCAtgttaaaacaaatctgcaattcTTCAAATAATCCCCCAAAATGTTTCACAACAGATTTTCTGAGAAAACTGAATCAGAATGGGCTTATTATCAATTTAGACGCATTGTATATCACAATATCTTGATATATGATTTCATCGCAATATGATTCCATTGAAAGACGGTTAAATTATCATATTGAATTATTGCCCAGTCTTAGTTGCAGGTAATGCAAGTCTAATACAATGCTTTCAATAATATCATTTGACAATTTGTTTGATAGTATCATTTAATTTCAAAACCTAACCCATGGGTCACCATGGCTCTAACCCCCTGCAGGTACAACATGACAGACTGGATCGGCTTTCTGAAATGAAGAGCACTGATGTTGGGTATTACAAAGGTCAGATCAAACAGAGTCCTAAAATTCAAGATAGTGTGACAATGGACTTACACAGTGAACAACAATATTAAGCTAGTGCctcatttttattattcaataaaaaacatCACGGTATTGATACGCTCTACCCACCCCCTACTCATCCACCCATCCCTTTCCTTAACCAGCTCAAAAACAAGTTTCACACCGAAAACCAGAGTACGCAGACGACTCTAGGTCTATACAACTACAAACTAAACAAGTCCATTAGAAAACAAATCCAGGATTTTTACAAAACTGATCAGCCAACTAACTTAAAAGGAATAAGTTCAACAGATCACATCGAAAGGAATGCTTATATTCTCTTCATGGCATCATCAATTTCTGAAATCTGGTCCTTCAGTTGGTTCCACTGTTCGGGATTCAGGGAGATACCTTTTTTTCCCCGGCTTCATCTCCCCATCTTGGTTCATCCAGTACTCTCTGATGTCAATCAGGACTTTGCCTTTGAAGTCCCTGACGCTGACATACCTCATCTTTCCAATCTGGAACATGTTGTCATCGCCATTGCCGCTGCCCTTGGATGAGCCGCCTGGCTTGGAACTCTCGCCGCTCTTTGGTTTCTTGGCTGGTTTCTCTGGTGGATTTGACTTCTTTCTCTttgcCTTGGTCTCTACTTCACTGTCAGAGTCACTTCCAGATGTGGAGGACAGCACTTCCTTTGATTTGGGCATTTTGATGATGGGATGGAGTTTGGCGGATCTCTTGACGGGAAGCGGAAAGCTAA

Function

symbol description
sub1 Enables identical protein binding activity; single-stranded DNA binding activity; and transcription coactivator activity. Involved in negative regulation of DNA metabolic process and regulation of transcription by RNA polymerase II. Located in nucleolus and nucleoplasm. Part of transcription regulator complex.

NR:

description
PREDICTED: activated RNA polymerase II transcriptional coactivator p15

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU79482 True 2033 TUCP 0.39 5 4424141 4429981

Neighbor

gene id symbol gene type direction distance location
npr3 npr3 coding upstream 35346 4357094 ~ 4388795 (+)
pdzd2 LOC102293871 coding upstream 80471 4271504 ~ 4343670 (+)
LOC120560812 thg1l,LOC106912903,LOC103154062 coding upstream 197109 4226036 ~ 4227032 (+)
si:dkey-3h3.3 NA coding upstream 215642 4199523 ~ 4208499 (+)
ccdc125 NA coding upstream 534486 3869033 ~ 3889655 (+)
araf araf,LOC103397571 coding downstream 7552 4437533 ~ 4456244 (+)
LOC120560544 ppp6c,LOC102784428,LOC105915786,LOC106585446,LOC103397055,LOC105014157,LOC101171716 coding downstream 266622 4696603 ~ 4703041 (+)
golga1 golga1 coding downstream 274736 4704717 ~ 4735322 (+)
rpl35 rpl35,LOC103397472 coding downstream 307959 4737940 ~ 4741131 (+)
chfr chfr coding downstream 960706 5390687 ~ 5416871 (+)
G59163 NA non-coding upstream 74222 4349566 ~ 4349919 (+)
G59132 NA non-coding upstream 94681 4307919 ~ 4329460 (+)
G59093 NA non-coding upstream 291077 4132848 ~ 4133064 (+)
G59042 NA non-coding upstream 462822 3961060 ~ 3961319 (+)
G59032 NA non-coding upstream 527900 3895670 ~ 3896241 (+)
G59174 NA non-coding downstream 3112 4433093 ~ 4435260 (+)
G59175 NA non-coding downstream 31383 4461364 ~ 4462824 (+)
G59217 NA non-coding downstream 124040 4554021 ~ 4555654 (+)
G59218 NA non-coding downstream 127024 4557005 ~ 4558065 (+)
G59240 NA non-coding downstream 193534 4623515 ~ 4624154 (+)
G59086 NA other upstream 306510 4117279 ~ 4117631 (+)
LOC120560521 tjp2 other upstream 901385 3435165 ~ 3522756 (+)
lman2lb NA other upstream 1540280 2878374 ~ 2883861 (+)
dock5 dock5 other upstream 2111476 2273678 ~ 2312665 (+)
lmx1bb lmx1b,LOC102213269,LOC100696266 other upstream 3586280 789405 ~ 837861 (+)
trnal-aag_1 NA other downstream 2190 4432171 ~ 4432253 (+)
trnaq-uug_2 NA other downstream 2687 4432668 ~ 4432739 (+)
mrpl41 mrpl41 other downstream 100073 4530054 ~ 4531165 (+)
LOC120560573 LOC104934257 other downstream 141402 4571383 ~ 4618033 (+)
fbrsl1 LOC103357558 other downstream 623252 5053233 ~ 5370868 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00009981 sub1,tcp4,LOC106568402 coding CM030129.1 CM030129.1 7995588 ~ 7999549 (-)