LOC120560008


Basic Information

Item Value
gene id LOC120560008
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 8434741 ~ 8437598 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU80762
tttacaagACATTTATTGGGCTTATAGTTCATGGTTACTATGGTGACACTGTTGCGGTTGTCTAATGAAATAGATACTCCTTTATAAGCCTACTGTAAGGATTTATTGGGCTTCTAATTCAATGAATTTGATCAAATCACACATAACTGCCAATATGTTTGGCTTATGTAGATGTTGACGAATACAGAGTGAATACAGACAAGGCAAACAAAAAGTCAGGCTGGTTGTAGTTCCGTCAGAGCTGGAAGCTGCTACCTGACCAGAGGAGGTTTGAGGTAAAGGAGGATGACCTGAAGAGTCTGGACAGACACTGAAGGGACAGAAGTCAGTACAAGCAAATGTgatataataaactgtataacATGGTGAAAAATGAAACTCTTACTGCGGTTTGTTTATAAACAGTTTGTTCATTGTATCACATTCAGTTATACTGACTTCTGTCCCTCCAGCGTCTGTCAGACTCCTGGTCATCAACCTCAACAGCTTACCGTTGTAACCTGTCCCTATCATGACTCGGTCTCTGTTCTGATTGATTGATGTTAAGGTATAACAAGGTATTTAAGGTATTTTTGGCTGTTAAACCTCTCTCCTTAACTGTTAATCTAAAATCCCCATTCAAGCCAttaaacatttcatatttttt
>XR_005639401.1
TTCAGGGAACAGTTAATAAAAATACAGGAAGCAATAACAGTCCAAGAGGCGAACACTGCAATTGCAGAGGCAGCAGATAGTCTCAGCATTATAGGTTCCTTAAGACATGTTTCCAGCCTGAAGGAGAAGGACTCCCTTGTACAGTCAGCTGCAGACTTCTTCGTCAATGGAAGATTGGTGACTGCCCTGGACCAGTTTGCTGAGGGGTTAAAAACCCTTGGTTTACTGGAGGAGctgaggaaaaatccagcagTGTTCTACAACATGTTTGTCAGTGAGGAGATTCCACTACAGGCGAAGGGCCTATGCACTTTATTTGACGTGGACTTCTCTGTGCAGGGCAGCACCGGAGAGACCGAGAAAAACAGACAATATGCTTTTGGCGTGACTGGTTAATTGAAATTGAAGAAGGATAATGCAGTCCAGTCACCCTGGAGAAGGTATTGGAGTTTACAACTGGAGCCTCAACAGTGCCTCCGCTGGGATTTCCACACCGTCCACAAATTCAGTTCCTTCATGAGGGCAACAGAATCTTCCCAGAAGCAAATACTTGTGCTCTTCTACTCCGCCTGCCGCTGCACTCTTCCTATGAAGCCTTCAAACAATACATGATGGAGGGAATTTTGCAAGCTCCAACCTTTGGACTTGCATGATGTCACTGTGTGTAAAATTTGTTGATGGAAATTCAGTTTTCACTTGAGCTATATTTATGCTTAGAAGTTAGTTGATAGAATGCTGTGTTGAAGCAAGTCACAGGTTCAaatggtaattttttttttttctttttttttagatttagtaattttgtttattttgctttAGTAACAGTTAACTTCAGTTAATTCAATATTGAGTTTTTCAGTTAACTCaaatgtattgtgtatttttttatttttttttgctttctttcaaaaatatttttatatatttttgaagATCTAAATTGACATGATTTTCACAACAATGGCACACAAATGTGAATTAAATACAGCCTAAAGACCACCAATTACCTCATTTCCAGAATTAGGATATTGGCTCTGAAGTTGCCTCACATGTTGTTCTAGTTCACCATCATCTATTGCAGACAGCATACTTCTAACAGGTATACCCATCAACTTTGACTTCTTGTACAGAAATGATGAGAAGCATCCCAGTATTTCAGCAGTTTGTGCAATTGTATGGCCTTGCTTCAGCAGAAATTCAATGTGTTCTCTGGTAACATCACGGGCTGGTCGGCCTCTTCTCACTACAAAAAAGTGTTTAAGCAGCATTgtactgtttattttttgtatatatcAGCGTAGCAATTCACATGCATGCATTGGAATTGCGTATTGTTAATGAATAGGCAGGTTcagatggagttttttttttagactcagtaattctgttcattttacatgagttACAGTTCACTTAAGTTGATAGGTTATTCAATATTGAGTTTTTCAGTTAACTCaaatgtattgtgtattttttttatattttgaatgttttttaaaaatattttaatttttacaagACATTTATTGGGCTTATAGTTCATGGTTACTATGGTGACACTGTTGCGGTTGTCTAATGAAATAGATACTCCTTTATAAGCCTACTGTAAGGATTTATTGGGCTTCTAATTCAATGAATTTGATCAAATCACACATAACTGCCAATATGTTTGGCTTATGTAGATGTTGACGAATACAGAGTGAATACAGACAAGGCAAACAAAAAGTCAGGCTGGTTGTAGTTCCGTCAGAGCTGGAAGCTGCTACCTGACCAGAGGAGGTTTGAGGTAAAGGAGGATGACCTGAAGAGTCTGGACAGACACTGAAGGGACAGAAGTCAGTACAAGCAAATGTgatataataaactgtataacATGGTGAAAAATGAAACTCTTACTGCGGTTTGTTTATAAACAGTTTGTTCATTGTATCACATTCAGTTATACTGACTTCTGTCCCTCCAGCGTCTGTCAGACTCCTGGTCATCAACCTCAACAGCTTACCGTTGTAACCTGTCCCTATCATGACTCGGTCTCTGTTCTGATTGATTGATGTTAAGGTATAACAAGGTATTTAAGGTATTTTTGGCTGTTAAACCTCTCTCCTTAACTGTTAATCTAAAATCCCCATTCAAGCCAttaaacatttcatattttttcatacA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU80762 False 646 lncRNA 0.38 1 8436947 8437592
XR_005639401.1 True 2166 lncRNA 0.38 4 8434741 8437598

Neighbor

gene id symbol gene type direction distance location
LOC120560868 NA coding upstream 32172 8331385 ~ 8402569 (+)
LOC120560867 NA coding upstream 45623 8387822 ~ 8389118 (+)
bicdl1 bicdl1 coding upstream 230555 8172560 ~ 8204186 (+)
LOC120560501 mtmr3,LOC103152423 coding upstream 351367 8078302 ~ 8083374 (+)
mtmr3 mtmr3 coding upstream 356573 8055365 ~ 8078168 (+)
LOC120560486 LOC107690107 coding downstream 27573 8465171 ~ 8482178 (+)
zgc:110329 LOC103366798,LOC104939353,LOC104956029 coding downstream 372956 8810554 ~ 8836973 (+)
slc4a5a slc4a5,LOC100703988,LOC101470466,LOC102293566,LOC102195261 coding downstream 424372 8861970 ~ 8907724 (+)
zgc:113436 LOC102776507 coding downstream 484685 8922283 ~ 8933253 (+)
LOC120560802 abcb9,LOC106965289 coding downstream 502231 8939829 ~ 8965106 (+)
LOC120560009 NA non-coding upstream 3511 8428953 ~ 8431230 (+)
G60147 NA non-coding upstream 16891 8417642 ~ 8417850 (+)
G60120 NA non-coding upstream 62190 8372266 ~ 8372551 (+)
G60109 NA non-coding upstream 107788 8325053 ~ 8326953 (+)
G60080 NA non-coding upstream 121628 8302258 ~ 8313113 (+)
trnaw-cca_2 NA non-coding downstream 6856 8444454 ~ 8444525 (+)
trnaw-cca_3 NA non-coding downstream 8020 8445618 ~ 8445689 (+)
trnaw-cca_4 NA non-coding downstream 9182 8446780 ~ 8446851 (+)
trnaw-cca_5 NA non-coding downstream 10347 8447945 ~ 8448016 (+)
trnaw-cca_6 NA non-coding downstream 11546 8449144 ~ 8449215 (+)
LOC120560007 NA other upstream 69 8431537 ~ 8434672 (+)
LOC120560006 NA other upstream 6996 8423189 ~ 8427745 (+)
cux2b cux2,LOC102795992 other upstream 383401 7947252 ~ 8051340 (+)
atp2a2a atp2a2,LOC102794349,LOC101476777,LOC102310403 other upstream 556370 7847671 ~ 7878371 (+)
zbtb26 LOC104940087,LOC100710858,LOC102306976,LOC102206222,LOC101473380,LOC102792103 other upstream 804561 7625736 ~ 7630180 (+)
vps37ba vps37b,vps37c,LOC102776795 other downstream 553843 8991441 ~ 9014903 (+)
ppp3cca LOC104934810,LOC100705072,LOC105915415,LOC101486266,LOC102777092,LOC103366803,LOC102200614,LOC101072650,LOC106932221 other downstream 580293 9017891 ~ 9055765 (+)
LOC120560959 golga7,LOC104937560,LOC106585131 other downstream 1489352 9926950 ~ 9981054 (+)
LOC120561142 NA other downstream 2288840 10726438 ~ 10746953 (+)
LOC120561144 NA other downstream 2310518 10748116 ~ 10752440 (+)

Expression


Co-expression Network