vps37ba (vps37b,vps37c,LOC102776795)


Basic Information

Item Value
gene id vps37ba
gene name vps37b,vps37c,LOC102776795
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 8991441 ~ 9014903 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU80912
ATAGAAATATTTGAGTGTCAGCTTCTTTTTATGTTATAGTACTAATAGAGTTATGTTAATGATAGCCAGGATAGACTGATTAACATGCGTAAAAGGAGGGCTTTGGTTGGTGTATCTCTTCTTCAATATGTGGTTGTGTCTCAAGAGTCCAGACCTGCCTGGTCCAAGATGGCTGACCTGCTGTACTCGGTCCATCTCAGAGCGAAAGTCATAAAGGGAGTTGAAGGAGAGGACCAGTGGCTGAACTATTGTAACAAATGACTAGGCCTGTTGAGCCTTGCCTGAAATGAAGGATCCTTTGTATAGCCATACAAgtacacttttttttgtggGTTCCTGTTGTAATGCAACACTCCTTTTTTATAATGTCCTTTGTCTTAAACTCATTTGGGATTGGAGATGATGCCAACAGTTCTTCTGGATCTCCTATGGTCCTGTTCAGTTTTCTGTCACACTGAGCACCAAAGATTTCCCACATCACTCTGTGttcaaacaattttttttttttttaatgtaggtGAAACATTTAGTGAGATGATCTACTATTGTTCCCAACATATCTGTTTGTGATGTTGAGCTCAAACACTCTGTAAACATGCAAGCGAGATTTCTTCAAAAGAAACTTGCGAGGTCAAACTGGCTTTTGGgaggaaagttttttttttttttttttttcggtgtGTTAGAAATTCACTTTTACTCCTCCCAAGTGCTGTAGCTGTGCACTGTTGAAGAGCCATGAGTGCCTACACTTGAAGTGACGTTGATCACGTCCTGCTGACTACTCCATGTTTCTCTATGCTCCTCTTCCCAACCCAAGAACAAACTGGCCAAGTATTTGGTCTTCTTCCCCCTCCTGCTACTGATTTCATGTTCCACCAGATGGTAGAAAAGAGTAGTGTGTGATTGTTAACTGTCAGACTGCTTTCTCACTAGAAACAGAAGGCCAGAATCGAGCGATACTGAACATGTGCCAGAGAGACAAGGGACGCCCTCAGGCTATACGCCTGGTGGTGCTTGTGCATCTCTTCCATTCTTCCTCTATTTGTATTGAGGTTTGCCTGGGGGTGAATTCAGAGatctgtgcatgtgttgttgctgggtttttttttgtttttagttgaTGAAAAAACAGGGCTCCAAAATGTTTTGTGTCATATCTTGGGGATAATACTTCACCTCAAGGCAAAGAAGTGGACCACAGAATGGACAAAGCATACTTGTCAGCAGGCAAAACTACAGAAATAGCTGAAGCTAAAACATCAACATCACCATGAGCCAGCATTTCTAACAACTAACAATAGATGATTCTTTTGTGCATGGCCTTTGCTCTTTGTGTCCAGTCTGAAGATTCctctttaatatatatatatattttttgggggTTGTGTTTAGCTGTTGAGCTGCTttttacgtttgaactgatccTCTGTCCATGGTTTTATATGTGGTTGGTGATATTTTCAATGTAATGTTGTAGATGATTACTTATAATGAATGTTTAAGTGGAATTTAATGCTATTTTCAAGTTCaataaatctcatt
>XM_039803658.1
ACTTCCTGTAAGGGAAGCCCAGTCAGCTGTCACAATCTGTGAAAGGCGAGAAGAGGGATCACAGGCGAAGAGAAACGCAAccagagctaaaaaaaaatgtctagtTTTTCCAACAAGTTTAGTGCTTACACGATGACTCAACTCAACGAAATTCTGGAGGACGAcgaaaaactcacaaaaatggtACAGGAGATGGATGAGATGCAGGAAGTTCAGCAGAGCAAAGAGGAGACACTGGTCCACAACCGAACCCTGGCAGAGCAAAACCTCATCCTGCAGCCCAGACTGGAGCACAACAAAGAGGAGCTCACCAAGCGCTACAGCTGTCTCCAGGAGAGATTTGAGTCCTATCAGCTTCGCAAATCCACCCTAGACCACAAGTCAGGAAACACCTCCCTGGACCTTTTGCTGGCCCTGCTGCAGGCGGAGGGAGCCAAAatagaagaggagacagagAATATGGCTGATTCATTCCTGGATGGTGACATGACCCTGGATTCCTTCGTCGATGCCTACCAGAGCAACCGAAAGCTGGCCCACTTGAGAAGGGTGAAGATCGAGAAGCTGCAGGAGATGGTGCTGAATGGTCACCGGCTCCCCCAGGCGTCGGTCCCTACCTCCCGATCTCAGGACGTGTCGGCAGCAGCCagacccccctcctcctccctcctcaacGATGCCGGCAGCAGCTCTTCCCCTGTCGCCCAGCCGAGGAGGAAACCCCCACTTCCTCCATCCCAGCCGGCCCCACTTCTAAATCCATCTCCAACCGCGGCCCCCCAGCCTTCTGTTTTCTTCTCAGCAACGCCATACCCGCCGATTCCTCCCAGAACAGGCCAACCATTCCCCAACGTCCCCTCTGGCTACCCCACCCACCTACTATCTCAGTACCCCCCAGCTTTGCCTCAAAGGCCCCCACCCCGGATGGCCCCGCAGCCTGGCTTCATCATGCAGTAGATAAATGATATTTGCCACTCAGAGGACACAGTGCGTGTCGTGGACTTTTCACTCCTGGAACTCCTCTTGAGAACAAGTTTTTTCTATGACGTCCGGCTTCTTCGAATATGAGCAATGACAACGCAAGAAGGCGGACCTGCACAGGCTGGGGGTGGTCACGTTCGGCTGAAGCAGATCTCCAATAACGTCTGTGGGTTCGTGCTCATCTCTCACTCCCAACAACACtcccaacaacaacagcaacaacaataaaaaaaaaacgggacGAGATCGGCCTCGACTCTCACCAACCCGAGTCCCTTCAGTGGAAAGGTCCAGTGCAGGCTGCTGTAGTCAGCCAGTGTCAGTCCATGGGTCACTGGGCTGGGACTTGTCATTTATCAGCACCTTCTGTCTCCTGGCAGTGCCCTCAGCTCTGCATTCCAATTAGTCCCCCTCTCTTACCTCCCTTCAAACATGCTCCTCAAGCTTTTATGGAACACTAAAGTCATTCAAAACAGGGTTTGATTAGTCATTTCCATCTGCAGCACTAATACTAATTTACTGGTAATGTATATGCAAGCAAAGAGAGACCCTAATTACTGTGCAGTAATCCCAGAATATATTCAGGCATCTATGCCTCAATCTATGCTgtgatatttttattattttttttttttaaatataaaaattcaCAAGGTACATAGAAATATTTGAGTGTCAGCTTCTTTTTATGTTATAGTACTAATAGAGTTATGTTAATGATAGCCAGGATAGACTGATTAACATGCGTAAAAGGAGGGCTTTGGTTGGTGTATCTCTTCTTCAATATGTGGTTGTGTCTCAAGAGTCCAGACCTGCCTGGTCCAAGATGGCTGACCTGCTGTACTCGGTCCATCTCAGAGCGAAAGTCATAAAGGGAGTTGAAGGAGAGGACCAGTGGCTGAACTATTGTAACAAATGACTAGGCCTGTTGAGCCTTGCCTGAAATGAAGGATCCTTTGTATAGCCATACAAgtacacttttttttgtggGTTCCTGTTGTAATGCAACACTCCTTTTTTATAATGTCCTTTGTCTTAAACTCATTTGGGATTGGAGATGATGCCAACAGTTCTTCTGGATCTCCTATGGTCCTGTTCAGTTTTCTGTCACACTGAGCACCAAAGATTTCCCACATCACTCTGTGttcaaacaattttttttttttttaatgtaggtGAAACATTTAGTGAGATGATCTACTATTGTTCCCAACATATCTGTTTGTGATGTTGAGCTCAAACACTCTGTAAACATGCAAGCGAGATTTCTTCAAAAGAAACTTGCGAGGTCAAACTGGCTTTTGGgaggaaagttttttttttttttttttttcggtgtGTTAGAAATTCACTTTTACTCCTCCCAAGTGCTGTAGCTGTGCACTGTTGAAGAGCCATGAGTGCCTACACTTGAAGTGACGTTGATCACGTCCTGCTGACTACTCCATGTTTCTCTATGCTCCTCTTCCCAACCCAAGAACAAACTGGCCAAGTATTTGGTCTTCTTCCCCCTCCTGCTACTGATTTCATGTTCCACCAGATGGTAGAAAAGAGTAGTGTGTGATTGTTAACTGTCAGACTGCTTTCTCACTAGAAACAGAAGGCCAGAATCGAGCGATACTGAACATGTGCCAGAGAGACAAGGGACGCCCTCAGGCTATACGCCTGGTGGTGCTTGTGCATCTCTTCCATTCTTCCTCTATTTGTATTGAGGTTTGCCTGGGGGTGAATTCAGAGatctgtgcatgtgttgttgctgggtttttttttgtttttagttgaTGAAAAAACAGGGCTCCAAAATGTTTTGTGTCATATCTTGGGGATAATACTTCACCTCAAGGCAAAGAAGTGGACCACAGAATGGACAAAGCATACTTGTCAGCAGGCAAAACTACAGAAATAGCTGAAGCTAAAACATCAACATCACCATGAGCCAGCATTTCTAACAACTAACAATAGATGATTCTTTTGTGCATGGCCTTTGCTCTTTGTGTCCAGTCTGAAGATTCctctttaatatatatatatattttttgggggTTGTGTTTAGCTGTTGAGCTGCTttttacgtttgaactgatccTCTGTCCATGGTTTTATATGTGGTTGGTGATATTTTCAATGTAATGTTGTAGATGATTACTTATAATGAATGTTTAAGTGGAATTTAATGCTATTTTCAAGTTCaataaatctcatttttttgta

Function

symbol description
vps37c Predicted to be involved in protein targeting to membrane; protein targeting to vacuole; and ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway. Predicted to act upstream of or within protein transport. Predicted to be located in late endosome membrane. Predicted to be part of ESCRT I complex. Orthologous to human VPS37C (VPS37C subunit of ESCRT-I).
vps37b Enables calcium-dependent protein binding activity. Involved in positive regulation of viral budding via host ESCRT complex and positive regulation of viral release from host cell. Located in endosome membrane; midbody; and plasma membrane. Part of ESCRT I complex.

NR:

description
PREDICTED: vacuolar protein sorting-associated protein 37B isoform X1

GO: NA

KEGG:

id description
K12185 VPS37; ESCRT-I complex subunit VPS37

RNA

RNA id representative length rna type GC content exon number start site end site
TU80912 False 1545 lncRNA 0.40 1 9013351 9014895
XM_039803658.1 True 3192 mRNA 0.46 4 8991441 9014903

Neighbor

gene id symbol gene type direction distance location
LOC120560490 abcb9 coding upstream 2078 8972286 ~ 8989363 (+)
LOC120560802 abcb9,LOC106965289 coding upstream 26335 8939829 ~ 8965106 (+)
zgc:113436 LOC102776507 coding upstream 58188 8922283 ~ 8933253 (+)
slc4a5a slc4a5,LOC100703988,LOC101470466,LOC102293566,LOC102195261 coding upstream 83717 8861970 ~ 8907724 (+)
zgc:110329 LOC103366798,LOC104939353,LOC104956029 coding upstream 154468 8810554 ~ 8836973 (+)
tcima LOC104938922,LOC102777577,LOC103152810,LOC103353800,LOC101487124,LOC102217691 coding downstream 118644 9133547 ~ 9134580 (+)
LOC120560494 NA coding downstream 353296 9368199 ~ 9375746 (+)
marveld2b LOC104926564,LOC103371582,LOC102788930,LOC102293847,LOC101466532 coding downstream 2158116 11173019 ~ 11188211 (+)
oclnb LOC104926565,LOC103397562 coding downstream 2178584 11193487 ~ 11206112 (+)
gtf2h2 LOC100696048,LOC102788170,LOC101466805,LOC102292669,LOC102204724 coding downstream 2204048 11218951 ~ 11231887 (+)
G60273 NA non-coding upstream 437 8989818 ~ 8991004 (+)
G60275 NA non-coding upstream 1728 8965505 ~ 8989713 (+)
G60232 NA non-coding upstream 61613 8854273 ~ 8929828 (+)
G60229 NA non-coding upstream 135011 8833627 ~ 8856430 (+)
G60223 NA non-coding upstream 206521 8784653 ~ 8784920 (+)
trnaq-cug_4 NA non-coding downstream 198339 9213242 ~ 9213313 (+)
G60363 NA non-coding downstream 267909 9282812 ~ 9283636 (+)
G60378 NA non-coding downstream 449025 9463928 ~ 9464187 (+)
G60387 NA non-coding downstream 476107 9491010 ~ 9491626 (+)
G60410 NA non-coding downstream 756855 9771758 ~ 9772052 (+)
LOC120560007 NA other upstream 556769 8431537 ~ 8434672 (+)
LOC120560006 NA other upstream 563696 8423189 ~ 8427745 (+)
cux2b cux2,LOC102795992 other upstream 940101 7947252 ~ 8051340 (+)
atp2a2a atp2a2,LOC102794349,LOC101476777,LOC102310403 other upstream 1113070 7847671 ~ 7878371 (+)
zbtb26 LOC104940087,LOC100710858,LOC102306976,LOC102206222,LOC101473380,LOC102792103 other upstream 1361261 7625736 ~ 7630180 (+)
ppp3cca LOC104934810,LOC100705072,LOC105915415,LOC101486266,LOC102777092,LOC103366803,LOC102200614,LOC101072650,LOC106932221 other downstream 2988 9017891 ~ 9055765 (+)
LOC120560959 golga7,LOC104937560,LOC106585131 other downstream 912047 9926950 ~ 9981054 (+)
LOC120561142 NA other downstream 1711535 10726438 ~ 10746953 (+)
LOC120561144 NA other downstream 1733213 10748116 ~ 10752440 (+)
G60897 NA other downstream 2911280 11926183 ~ 11926601 (+)

Expression


Co-expression Network