G61139 (tubb2b,tubb4b,LOC103024866,LOC101061694,LOC105901187)


Basic Information

Item Value
gene id G61139
gene name tubb2b,tubb4b,LOC103024866,LOC101061694,LOC105901187
gene type unknown
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 12921147 ~ 12923836 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU81938
cattaaaaccaggaaagcAGAGTTCAAAAATGCATAAGATTTTATTAACATGAACAGCAGACAGAACACTGAAAACTGGATAGACATGGAACGTTATTTCACTACAACTTCTGCAGAGCTTTATAGAAGTGACCCATTTAGGCCAGCTCCTCCTCACCCTCCTCCTCAAACTCGCCCTCCTCCTCAGCAGTGGCATCCTGGTACTGCTGGTACTCAGACACCAGGTCGTTCATGTTGCTCTCTGCCTCTGTGAACTCCATCTCATCCATACCCTCGCCGGTGTACCAGTGGAGGAAAGCTTTGCGCCTGAACATAGCAGTGAACTGCTCAGAGATGCGCTTGAACAGCTCCTGGATGGCTGTGCTGTTGCCGATGAAAGTGGCAGCCATCTTGAGGCCACGGGGAGGAATGTCGCAGACGGCGGTCTTGACGTTGTTGGGGATCCATTCAACAAAGTAGCTGCTGTTCTTGTTCTGCACGTTCAGCATCTGCTCATCCACCTCCTTCATGGACATGCGGCCGCGGAAGATGGCAGCCACCGTAAGGTAACGGCCGTGACGCGGGTCGCAGGCGGCCATCATGTTCTTGGCGTCGAACATCTGCTGGGTGAGCTCCGGCACAGTGAGTGACCTGTACTGCTGGCTGCCTCGGCTTGTGAGGGGAGCAAAGCCTGGCATGAAGAAGTGCAGACGGGGGAATGGCACCATGTTTACCGCAAGCTTACGCAGGTCGGCGTTGAGCTGTCCGGGGAACCTGAGGCAGGTGGTGACACCGCTCATGGTGGCAGAAACCAAGTGGTTGAGGTCACCGTATGAGGGGGTTGTGAGTTTAAGGGTGCGGAAACAGATGTCATACAAAGCCTCATTGTCGATGCAGTAGGTCTCGTCCGTGTTTTCTACAAGCTGGTGGACCGATAGTGTGGCGTTGTAGGGCTCAACAACTGTGTCCGATACTTTTGGGGAAGGCACCACGCTGAAGGTGTTCATGATGCGGTCGGGGTACTCTTCACGGATCTTGCTGATGAGCAGGGTGCCCATACCAGAGCCTGTACCACCACCCAGGGAGTGTGTGAGCTGGAAGCCCTGAAGGCAGTCGCAGCTCTCTGCCTCCTTCCTCACCACATCAAGGACAGAGTCAACCAGCTCTGCACCCTCTGTGTAGTGACCCTTAGCCCAGTTGTTGCCAGCACCACTCTGGCCAACACAAAGTTGTCTGGTCTGAAGACCTGGCCGAAAGGTCCGGACCTCACAGAGTCCATGGTACCTGGCTCCAGATCAACCAGCACAGCACGGGGGACATATTTCCCACCTACAAAAGCAGGTCAGGGGTTAGGGAAATAAATGGCAAAGAAAAGTCTGTACTTTATCCTGTACAAATAAATACTTACCTGAGGCTTCATTGTAGTAAACATTGATCCTGTCCAGCTGCAGGTCACTGTCACCGTGGTATGTACCAGTTGGGTCAATTCCATGCTCGTCACTTATCACCtcccaaaactTTGGCACCAATCTGGTTTCCGCACTGGCCAGCTTGGAGATGCACAATTTCCCTCATTTTGCTTTCTGGAGGTGGGGTGGACCTTTCTACGACTGATACCGCCTttctttatgtgtgtgaacAACGGCTCAACCCTCTATTTTATACTACAACAAGACCCGCCCTTTACGTTTAAGATCGAATGTGTATTGGCTGATTTTCGAAAGCGTCATCTACAGACACACTCTTAAACCAATCAAATGTTTCAATGCTTATCCGCC
>TU81939
cattaaaaccaggaaagcAGAGTTCAAAAATGCATAAGATTTTATTAACATGAACAGCAGACAGAACACTGAAAACTGGATAGACATGGAACGTTATTTCACTACAACTTCTGCAGAGCTTTATAGAAGTGACCCATTTAGGCCAGCTCCTCCTCACCCTCCTCCTCAAACTCGCCCTCCTCCTCAGCAGTGGCATCCTGGTACTGCTGGTACTCAGACACCAGGTCGTTCATGTTGCTCTCTGCCTCTGTGAACTCCATCTCATCCATACCCTCGCCGGTGTACCAGTGGAGGAAAGCTTTGCGCCTGAACATAGCAGTGAACTGCTCAGAGATGCGCTTGAACAGCTCCTGGATGGCTGTGCTGTTGCCGATGAAAGTGGCAGCCATCTTGAGGCCACGGGGAGGAATGTCGCAGACGGCGGTCTTGACGTTGTTGGGGATCCATTCAACAAAGTAGCTGCTGTTCTTGTTCTGCACGTTCAGCATCTGCTCATCCACCTCCTTCATGGACATGCGGCCGCGGAAGATGGCAGCCACCGTAAGGTAACGGCCGTGACGCGGGTCGCAGGCGGCCATCATGTTCTTGGCGTCGAACATCTGCTGGGTGAGCTCCGGCACAGTGAGTGACCTGTACTGCTGGCTGCCTCGGCTTGTGAGGGGAGCAAAGCCTGGCATGAAGAAGTGCAGACGGGGGAATGGCACCATGTTTACCGCAAGCTTACGCAGGTCGGCGTTGAGCTGTCCGGGGAACCTGAGGCAGGTGGTGACACCGCTCATGGTGGCAGAAACCAAGTGGTTGAGGTCACCGTATGAGGGGGTTGTGAGTTTAAGGGTGCGGAAACAGATGTCATACAAAGCCTCATTGTCGATGCAGTAGGTCTCGTCCGTGTTTTCTACAAGCTGGTGGACCGATAGTGTGGCGTTGTAGGGCTCAACAACTGTGTCCGATACTTTTGGGGAAGGCACCACGCTGAAGGTGTTCATGATGCGGTCGGGGTACTCTTCACGGATCTTGCTGATGAGCAGGGTGCCCATACCAGAGCCTGTACCACCACCCAGGGAGTGTGTGAGCTGGAAGCCCTGAAGGCAGTCGCAGCTCTCTGCCTCCTTCCTCACCACATCAAGGACAGAGTCAACCAGCTCTGCACCCTCTGTGTAGTGACCCTTAGCCCAGTTGTTGCCAGCACCACTCTGGCCTGTAACACAAGATTAAGGTTCAcgcatttatatataaaaaaattaaacaaaaacaaaaaaaagcataatgGAGTAGCTGAAATTTGCTggacaaatgcacacaaaaaagtaatttacCAAACACAAAGTTGTCTGGTCTGAAGACCTGGCCGAAAGGTCCGGACCTCACAGAGTCCATGGTACCTGGCTCCAGATCAACCAGCACAGCACGGGGGACATATTTCCCACCTACAAAAGCAGGTCAGGGGTTAGGGAAATAAATGGCAAAGAAAAGTCTGTACTTTATCCTGTACAAATAAATACTTACCTGAGGCTTCATTGTAGTAAACATTGATCCTGTCCAGCTGCAGGTCACTGTCACCGTGGTATGTACCAGTTGGGTCAATTCCATGCTCGTCACTTATCACCtcccaaaactTTGGCACCAATCTGGTTTCCGCACTGGCCAGCTTGGAGATGCACAATTTCCCTCATTTTGCTTTCTGGAGGTGGGGTGGACCTTTCTACGACTGATACCGCCTttctttatgtgtgtgaacAACGGCTCAACCCTCTATTTTATACTACAACAAGACCCGCCCTTTACGTTTAAGATCGAATGTGTATTGGCTGATTTTCGAAAGCGTCATCTACAGACACACTCTTAAACCAATCAAATGTTTCAATGCTTATCCGCC

Function

symbol description
tubb4b Predicted to enable GTP binding activity. Predicted to be a structural constituent of cytoskeleton. Acts upstream of or within cilium assembly. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm and microtubule. Is expressed in brain. Human ortholog(s) of this gene implicated in Leber congenital amaurosis with early-onset deafness; hypomyelinating leukodystrophy 6; and torsion dystonia 4. Orthologous to several human genes including TUBB4B (tubulin beta 4B class IVb).
tubb2b Predicted to enable GTP binding activity. Predicted to be a structural constituent of cytoskeleton. Predicted to be involved in microtubule cytoskeleton organization and mitotic cell cycle. Predicted to act upstream of or within microtubule-based process. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm and microtubule. Human ortholog(s) of this gene implicated in complex cortical dysplasia with other brain malformations 7. Orthologous to human TUBB2B (tubulin beta 2B class IIb).

NR:

description
tubulin, beta, 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU81938 False 1757 TUCP 0.52 3 12921147 12923836
TU81939 True 1876 TUCP 0.50 2 12921147 12923836

Neighbor

gene id symbol gene type direction distance location
si:dkey-90l8.3 LOC104923788,LOC103353846 coding upstream 55895 12860590 ~ 12865252 (+)
ccn1l2 LOC104943830 coding upstream 83240 12831272 ~ 12837907 (+)
fkbp15b NA coding upstream 126716 12752510 ~ 12794431 (+)
fgf17 fgf17,LOC100689794 coding upstream 172611 12740866 ~ 12748536 (+)
LOC120561040 NA coding upstream 419597 12474081 ~ 12501550 (+)
lhx2b lhx2 coding downstream 425305 13349141 ~ 13366210 (+)
adgrd2 NA coding downstream 643723 13567559 ~ 13646350 (+)
LOC120561313 olfml2a coding downstream 945846 13869682 ~ 13902649 (+)
LOC120559997 NA coding downstream 1021202 13945038 ~ 13961157 (+)
atad1a atad1,LOC101479261,LOC100705680,LOC104934768,LOC102292399,LOC106527948 coding downstream 1062395 13986231 ~ 14000271 (+)
G61091 NA non-coding upstream 239079 12679709 ~ 12682068 (+)
G61067 NA non-coding upstream 282287 12638608 ~ 12638860 (+)
G61053 NA non-coding upstream 311689 12609104 ~ 12609458 (+)
G61052 NA non-coding upstream 313090 12607644 ~ 12608057 (+)
G61050 NA non-coding upstream 316937 12603756 ~ 12604210 (+)
G61160 NA non-coding downstream 75623 12999459 ~ 12999887 (+)
G61192 NA non-coding downstream 257746 13181582 ~ 13182308 (+)
G61194 NA non-coding downstream 258783 13182619 ~ 13184450 (+)
G61232 NA non-coding downstream 500915 13424751 ~ 13424951 (+)
G61244 nr5a1,LOC101062876 non-coding downstream 723461 13647297 ~ 13651464 (+)
G60897 NA other upstream 994546 11926183 ~ 11926601 (+)
LOC120561144 NA other upstream 2168707 10748116 ~ 10752440 (+)
LOC120561142 NA other upstream 2174194 10726438 ~ 10746953 (+)
LOC120560959 golga7,LOC104937560,LOC106585131 other upstream 2940093 9926950 ~ 9981054 (+)
ppp3cca LOC104934810,LOC100705072,LOC105915415,LOC101486266,LOC102777092,LOC103366803,LOC102200614,LOC101072650,LOC106932221 other upstream 3865382 9017891 ~ 9055765 (+)
LOC120560904 crb2,LOC103353841,LOC106959700,LOC106929552 other downstream 208262 13132098 ~ 13180491 (+)
G61337 LOC100705941,LOC102292089,LOC108234925,LOC106529513,LOC104934772,LOC103365846 other downstream 1183647 14107483 ~ 14109546 (+)
G61338 htr7,LOC104934772,LOC101065316 other downstream 1217606 14141442 ~ 14142050 (+)
LOC120560400 tmem150a,LOC106585116 other downstream 1328420 14252256 ~ 14281771 (+)
G61383 NA other downstream 1359581 14283417 ~ 14283871 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_036057 bcl2l16 coding NC_007119.7 CM002892.2 52701811 ~ 52716316 (+)